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Items: 1 to 50 of 52

1.

Saturation mutagenesis reveals manifold determinants of exon definition.

Ke S, Anquetil V, Zamalloa JR, Maity A, Yang A, Arias MA, Kalachikov S, Russo JJ, Ju J, Chasin LA.

Genome Res. 2018 Jan;28(1):11-24. doi: 10.1101/gr.219683.116. Epub 2017 Dec 14.

2.

Function of Metallothionein-3 in Neuronal Cells: Do Metal Ions Alter Expression Levels of MT3?

Bousleiman J, Pinsky A, Ki S, Su A, Morozova I, Kalachikov S, Wiqas A, Silver R, Sever M, Austin RN.

Int J Mol Sci. 2017 May 25;18(6). pii: E1133. doi: 10.3390/ijms18061133.

3.

Design and characterization of a nanopore-coupled polymerase for single-molecule DNA sequencing by synthesis on an electrode array.

Stranges PB, Palla M, Kalachikov S, Nivala J, Dorwart M, Trans A, Kumar S, Porel M, Chien M, Tao C, Morozova I, Li Z, Shi S, Aberra A, Arnold C, Yang A, Aguirre A, Harada ET, Korenblum D, Pollard J, Bhat A, Gremyachinskiy D, Bibillo A, Chen R, Davis R, Russo JJ, Fuller CW, Roever S, Ju J, Church GM.

Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):E6749-E6756. Epub 2016 Oct 11.

4.

Real-time single-molecule electronic DNA sequencing by synthesis using polymer-tagged nucleotides on a nanopore array.

Fuller CW, Kumar S, Porel M, Chien M, Bibillo A, Stranges PB, Dorwart M, Tao C, Li Z, Guo W, Shi S, Korenblum D, Trans A, Aguirre A, Liu E, Harada ET, Pollard J, Bhat A, Cech C, Yang A, Arnold C, Palla M, Hovis J, Chen R, Morozova I, Kalachikov S, Russo JJ, Kasianowicz JJ, Davis R, Roever S, Church GM, Ju J.

Proc Natl Acad Sci U S A. 2016 May 10;113(19):5233-8. doi: 10.1073/pnas.1601782113. Epub 2016 Apr 18.

5.

A strategy to capture and characterize the synaptic transcriptome.

Puthanveettil SV, Antonov I, Kalachikov S, Rajasethupathy P, Choi YB, Kohn AB, Citarella M, Yu F, Karl KA, Kinet M, Morozova I, Russo JJ, Ju J, Moroz LL, Kandel ER.

Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):7464-9. doi: 10.1073/pnas.1304422110. Epub 2013 Apr 15.

6.

Combining small-volume metabolomic and transcriptomic approaches for assessing brain chemistry.

Knolhoff AM, Nautiyal KM, Nemes P, Kalachikov S, Morozova I, Silver R, Sweedler JV.

Anal Chem. 2013 Mar 19;85(6):3136-43. doi: 10.1021/ac3032959. Epub 2013 Mar 1.

7.

Charge-neutral morpholino microarrays for nucleic acid analysis.

Qiao W, Kalachikov S, Liu Y, Levicky R.

Anal Biochem. 2013 Mar 15;434(2):207-14. doi: 10.1016/j.ab.2012.12.001. Epub 2012 Dec 12.

8.

Label-free DNA microarray bioassays using a near-field scanning microwave microscope.

Lee K, Babajanyan A, Melikyan H, Kim C, Kim S, Kim J, Lee JH, Friedman B, Levicky R, Kalachikov S.

Biosens Bioelectron. 2013 Apr 15;42:326-31. doi: 10.1016/j.bios.2012.10.027. Epub 2012 Oct 26.

PMID:
23208106
9.

Mitochondrial single nucleotide polymorphism genotyping by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using cleavable biotinylated dideoxynucleotides.

Qiu C, Kumar S, Guo J, Lu J, Shi S, Kalachikov SM, Russo JJ, Naini AB, Schon EA, Ju J.

Anal Biochem. 2012 Aug 15;427(2):202-10. doi: 10.1016/j.ab.2012.05.001. Epub 2012 May 10.

PMID:
22579594
10.

Loss of Arnt (Hif1β) in mouse epidermis triggers dermal angiogenesis, blood vessel dilation and clotting defects.

Wondimu A, Weir L, Robertson D, Mezentsev A, Kalachikov S, Panteleyev AA.

Lab Invest. 2012 Jan;92(1):110-24. doi: 10.1038/labinvest.2011.134. Epub 2011 Sep 26.

11.

Quantitative evaluation of all hexamers as exonic splicing elements.

Ke S, Shang S, Kalachikov SM, Morozova I, Yu L, Russo JJ, Ju J, Chasin LA.

Genome Res. 2011 Aug;21(8):1360-74. doi: 10.1101/gr.119628.110. Epub 2011 Jun 9.

12.

Impact of monocytic cells on recovery of uncultivable bacteria from atherosclerotic lesions.

Rafferty B, Jönsson D, Kalachikov S, Demmer RT, Nowygrod R, Elkind MS, Bush H Jr, Kozarov E.

J Intern Med. 2011 Sep;270(3):273-80. doi: 10.1111/j.1365-2796.2011.02373.x. Epub 2011 Apr 11.

13.

Cultivation of Enterobacter hormaechei from human atherosclerotic tissue.

Rafferty B, Dolgilevich S, Kalachikov S, Morozova I, Ju J, Whittier S, Nowygrod R, Kozarov E.

J Atheroscler Thromb. 2011;18(1):72-81. Epub 2010 Oct 20.

14.

Evaluation of depression risk in LGI1 mutation carriers.

Heiman GA, Kamberakis K, Gill R, Kalachikov S, Pedley TA, Hauser WA, Ottman R.

Epilepsia. 2010 Sep;51(9):1685-90. doi: 10.1111/j.1528-1167.2010.02677.x. Epub 2010 Jul 26.

15.

Transcriptional repressor Blimp-1 promotes CD8(+) T cell terminal differentiation and represses the acquisition of central memory T cell properties.

Rutishauser RL, Martins GA, Kalachikov S, Chandele A, Parish IA, Meffre E, Jacob J, Calame K, Kaech SM.

Immunity. 2009 Aug 21;31(2):296-308. doi: 10.1016/j.immuni.2009.05.014. Epub 2009 Aug 6.

16.

SigmaS controls multiple pathways associated with intracellular multiplication of Legionella pneumophila.

Hovel-Miner G, Pampou S, Faucher SP, Clarke M, Morozova I, Morozov P, Russo JJ, Shuman HA, Kalachikov S.

J Bacteriol. 2009 Apr;191(8):2461-73. doi: 10.1128/JB.01578-08. Epub 2009 Feb 13.

17.

ReproArray(GTS): a cDNA microarray for identification of reproduction-related genes in the giant tiger shrimp Penaeus monodon and characterization of a novel nuclear autoantigenic sperm protein (NASP) gene.

Karoonuthaisiri N, Sittikankeaw K, Preechaphol R, Kalachikov S, Wongsurawat T, Uawisetwathana U, Russo JJ, Ju J, Klinbunga S, Kirtikara K.

Comp Biochem Physiol Part D Genomics Proteomics. 2009 Jun;4(2):90-9. doi: 10.1016/j.cbd.2008.11.003. Epub 2008 Dec 10.

PMID:
20403739
18.

The PmrA/PmrB two-component system of Legionella pneumophila is a global regulator required for intracellular replication within macrophages and protozoa.

Al-Khodor S, Kalachikov S, Morozova I, Price CT, Abu Kwaik Y.

Infect Immun. 2009 Jan;77(1):374-86. doi: 10.1128/IAI.01081-08. Epub 2008 Oct 20.

19.

Loss of RNase R induces competence development in Legionella pneumophila.

Charpentier X, Faucher SP, Kalachikov S, Shuman HA.

J Bacteriol. 2008 Dec;190(24):8126-36. doi: 10.1128/JB.01035-08. Epub 2008 Oct 10.

20.

Four-color DNA sequencing with 3'-O-modified nucleotide reversible terminators and chemically cleavable fluorescent dideoxynucleotides.

Guo J, Xu N, Li Z, Zhang S, Wu J, Kim DH, Sano Marma M, Meng Q, Cao H, Li X, Shi S, Yu L, Kalachikov S, Russo JJ, Turro NJ, Ju J.

Proc Natl Acad Sci U S A. 2008 Jul 8;105(27):9145-50. doi: 10.1073/pnas.0804023105. Epub 2008 Jun 30.

21.

BAF180 is a critical regulator of p21 induction and a tumor suppressor mutated in breast cancer.

Xia W, Nagase S, Montia AG, Kalachikov SM, Keniry M, Su T, Memeo L, Hibshoosh H, Parsons R.

Cancer Res. 2008 Mar 15;68(6):1667-74. doi: 10.1158/0008-5472.CAN-07-5276.

22.

Epidermal terminal differentiation depends on B lymphocyte-induced maturation protein-1.

Magnúsdóttir E, Kalachikov S, Mizukoshi K, Savitsky D, Ishida-Yamamoto A, Panteleyev AA, Calame K.

Proc Natl Acad Sci U S A. 2007 Sep 18;104(38):14988-93. Epub 2007 Sep 10.

23.

Design and characterization of two-dye and three-dye binary fluorescent probes for mRNA detection.

Martí AA, Li X, Jockusch S, Stevens N, Li Z, Raveendra B, Kalachikov S, Morozova I, Russo JJ, Akins DL, Ju J, Turro NJ.

Tetrahedron. 2007 Apr 23;63(17):3591-3600.

24.

Neuronal transcriptome of Aplysia: neuronal compartments and circuitry.

Moroz LL, Edwards JR, Puthanveettil SV, Kohn AB, Ha T, Heyland A, Knudsen B, Sahni A, Yu F, Liu L, Jezzini S, Lovell P, Iannucculli W, Chen M, Nguyen T, Sheng H, Shaw R, Kalachikov S, Panchin YV, Farmerie W, Russo JJ, Ju J, Kandel ER.

Cell. 2006 Dec 29;127(7):1453-67.

25.

Targeted ablation of Arnt in mouse epidermis results in profound defects in desquamation and epidermal barrier function.

Geng S, Mezentsev A, Kalachikov S, Raith K, Roop DR, Panteleyev AA.

J Cell Sci. 2006 Dec 1;119(Pt 23):4901-12. Epub 2006 Nov 14.

26.

Classification of partial seizure symptoms in genetic studies of the epilepsies.

Choi H, Winawer MR, Kalachikov S, Pedley TA, Hauser WA, Ottman R.

Neurology. 2006 Jun 13;66(11):1648-53.

27.

Pyrene binary probes for unambiguous detection of mRNA using time-resolved fluorescence spectroscopy.

Martí AA, Li X, Jockusch S, Li Z, Raveendra B, Kalachikov S, Russo JJ, Morozova I, Puthanveettil SV, Ju J, Turro NJ.

Nucleic Acids Res. 2006 Jun 12;34(10):3161-8. Print 2006.

28.

Control of the C. albicans cell wall damage response by transcriptional regulator Cas5.

Bruno VM, Kalachikov S, Subaran R, Nobile CJ, Kyratsous C, Mitchell AP.

PLoS Pathog. 2006 Mar;2(3):e21. Epub 2006 Mar 17.

29.

Evidence for acquisition of Legionella type IV secretion substrates via interdomain horizontal gene transfer.

de Felipe KS, Pampou S, Jovanovic OS, Pericone CD, Ye SF, Kalachikov S, Shuman HA.

J Bacteriol. 2005 Nov;187(22):7716-26.

30.

Sensitive, label-free DNA diagnostics based on near-field microwave imaging.

Friedman B, Gaspar MA, Kalachikov S, Lee K, Levicky R, Shen G, Yoo H.

J Am Chem Soc. 2005 Jul 13;127(27):9666-7.

PMID:
15998053
31.

The genomic sequence of the accidental pathogen Legionella pneumophila.

Chien M, Morozova I, Shi S, Sheng H, Chen J, Gomez SM, Asamani G, Hill K, Nuara J, Feder M, Rineer J, Greenberg JJ, Steshenko V, Park SH, Zhao B, Teplitskaya E, Edwards JR, Pampou S, Georghiou A, Chou IC, Iannuccilli W, Ulz ME, Kim DH, Geringer-Sameth A, Goldsberry C, Morozov P, Fischer SG, Segal G, Qu X, Rzhetsky A, Zhang P, Cayanis E, De Jong PJ, Ju J, Kalachikov S, Shuman HA, Russo JJ.

Science. 2004 Sep 24;305(5692):1966-8.

32.

LGI1 mutations in autosomal dominant partial epilepsy with auditory features.

Ottman R, Winawer MR, Kalachikov S, Barker-Cummings C, Gilliam TC, Pedley TA, Hauser WA.

Neurology. 2004 Apr 13;62(7):1120-6.

33.

An unbiased cDNA library prepared from isolated Aplysia sensory neuron processes is enriched for cytoskeletal and translational mRNAs.

Moccia R, Chen D, Lyles V, Kapuya E, E Y, Kalachikov S, Spahn CM, Frank J, Kandel ER, Barad M, Martin KC.

J Neurosci. 2003 Oct 15;23(28):9409-17.

34.

Mutations in LGI1 cause autosomal-dominant partial epilepsy with auditory features.

Kalachikov S, Evgrafov O, Ross B, Winawer M, Barker-Cummings C, Martinelli Boneschi F, Choi C, Morozov P, Das K, Teplitskaya E, Yu A, Cayanis E, Penchaszadeh G, Kottmann AH, Pedley TA, Hauser WA, Ottman R, Gilliam TC.

Nat Genet. 2002 Mar;30(3):335-41. Epub 2002 Jan 28.

35.

Nucleotide sequence, transcription map, and mutation analysis of the 13q14 chromosomal region deleted in B-cell chronic lymphocytic leukemia.

Migliazza A, Bosch F, Komatsu H, Cayanis E, Martinotti S, Toniato E, Guccione E, Qu X, Chien M, Murty VV, Gaidano G, Inghirami G, Zhang P, Fischer S, Kalachikov SM, Russo J, Edelman I, Efstratiadis A, Dalla-Favera R.

Blood. 2001 Apr 1;97(7):2098-104.

PMID:
11264177
36.

A knowledge model for analysis and simulation of regulatory networks.

Rzhetsky A, Koike T, Kalachikov S, Gomez SM, Krauthammer M, Kaplan SH, Kra P, Russo JJ, Friedman C.

Bioinformatics. 2000 Dec;16(12):1120-8.

PMID:
11159331
37.

Molecular pathogenesis of B-cell chronic lymphocytic leukemia: analysis of 13q14 chromosomal deletions.

Migliazza A, Cayanis E, Bosch-Albareda F, Komatsu H, Martinotti S, Toniato E, Kalachikov S, Bonaldo MF, Jelene P, Ye X, Rzhetsky A, Qu X, Chien M, Inghirami G, Gaidano G, Vitolo U, Saglio G, Resegotti L, Zhang P, Soares MB, Russo J, Fischer SG, Edelman IS, Efstratiadis A, Dalla-Favera R.

Curr Top Microbiol Immunol. 2000;252:275-84. Review. No abstract available.

PMID:
11125485
38.

Familial primary pulmonary hypertension (gene PPH1) is caused by mutations in the bone morphogenetic protein receptor-II gene.

Deng Z, Morse JH, Slager SL, Cuervo N, Moore KJ, Venetos G, Kalachikov S, Cayanis E, Fischer SG, Barst RJ, Hodge SE, Knowles JA.

Am J Hum Genet. 2000 Sep;67(3):737-44. Epub 2000 Jul 20.

39.

Cloning and genomic organization of beclin 1, a candidate tumor suppressor gene on chromosome 17q21.

Aita VM, Liang XH, Murty VV, Pincus DL, Yu W, Cayanis E, Kalachikov S, Gilliam TC, Levine B.

Genomics. 1999 Jul 1;59(1):59-65.

PMID:
10395800
40.

A single gene for human TRAF-3 at chromosome 14q32.3 encodes a variety of mRNA species by alternative polyadenylation, mRNA splicing and transcription initiation.

van Eyndhoven WG, Frank D, Kalachikov S, Cleary AM, Hong DI, Cho E, Nasr S, Perez AJ, Mackus WJ, Cayanis E, Wellington S, Fischer SG, Warburton D, Lederman S.

Mol Immunol. 1998 Dec;35(18):1189-206.

PMID:
10199393
41.

Molecular hybridization probes prepared with 4-aminooxybutylamine.

Adarichev VA, Kalachikov SM, Kiseliova AV, Dymshits GM.

Bioconjug Chem. 1998 Nov-Dec;9(6):671-5.

PMID:
9815159
42.

Tools for visualization and integration of intermediate sequencing results in large disease gene discovery projects.

Rzhetsky A, Kalachikov S, Ye X, Zhang P, Russo JJ.

Gene. 1998 Feb 16;208(1):31-5.

PMID:
9479040
43.

High-resolution YAC-cosmid-STS map of human chromosome 13.

Cayanis E, Russo JJ, Kalachikov S, Ye X, Park SH, Sunjevaric I, Bonaldo MF, Lawton L, Venkatraj VS, Schon E, Soares MB, Rothstein R, Warburton D, Edelman IS, Zhang P, Efstratiadis A, Fischer SG.

Genomics. 1998 Jan 1;47(1):26-43.

PMID:
9465293
44.

TRANCE is a novel ligand of the tumor necrosis factor receptor family that activates c-Jun N-terminal kinase in T cells.

Wong BR, Rho J, Arron J, Robinson E, Orlinick J, Chao M, Kalachikov S, Cayani E, Bartlett FS 3rd, Frankel WN, Lee SY, Choi Y.

J Biol Chem. 1997 Oct 3;272(40):25190-4.

45.

Cloning and gene mapping of the chromosome 13q14 region deleted in chronic lymphocytic leukemia.

Kalachikov S, Migliazza A, Cayanis E, Fracchiolla NS, Bonaldo MF, Lawton L, Jelenc P, Ye X, Qu X, Chien M, Hauptschein R, Gaidano G, Vitolo U, Saglio G, Resegotti L, Brodjansky V, Yankovsky N, Zhang P, Soares MB, Russo J, Edelman IS, Efstratiadis A, Dalla-Favera R, Fischer SG.

Genomics. 1997 Jun 15;42(3):369-77.

PMID:
9205107
46.

A high-resolution annotated physical map of the human chromosome 13q12-13 region containing the breast cancer susceptibility locus BRCA2.

Fischer SG, Cayanis E, de Fatima Bonaldo M, Bowcock AM, Deaven LL, Edelman IS, Gallardo T, Kalachikov S, Lawton L, Longmire JL, Lovett M, Osborne-Lawrence S, Rothstein R, Russo JJ, Soares MB, Sunjevaric I, Venkatraj VS, Warburton D, Zhang P, Efstratiadis A.

Proc Natl Acad Sci U S A. 1996 Jan 23;93(2):690-4.

47.

Report and abstracts of the Third International Workshop on Human Chromosome 13 Mapping. Tarrytown, New York, October 29-31, 1995.

Warburton D, Shaw SH, Matise TC, Kalachikov S, Fischer S.

Cytogenet Cell Genet. 1996;75(2-3):85-110. No abstract available.

PMID:
9040776
48.

[Cloning universal probes for detecting mycoplasma contamination of cell cultures].

Kalachikov SM, Kel' AE, Dymshits GM, Ishov AM, Borkhsenius SN.

Mol Biol (Mosk). 1994 Mar-Apr;28(2):444-52. Russian.

PMID:
8183277
49.

[The isolation of the bovine leukemia provirus by the polymerase chain reaction with subsequent nonradioactive blot hybridization].

Popov AN, Adarichev VA, Kalachikov SM, Mishina ES, Dymshits GM.

Vopr Virusol. 1993 May-Jun;38(3):113-6. Russian.

PMID:
8073749
50.

[Immobilization of DNA on microporous membranes using UV-irradiation].

Kalachikov SM, Adarichev BA, Dymshits GM.

Bioorg Khim. 1992 Jan;18(1):52-62. Russian.

PMID:
1524584

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