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Items: 1 to 50 of 125

1.

Seasonal Stability and Dynamics of DNA Methylation in Plants in a Natural Environment.

Ito T, Nishio H, Tarutani Y, Emura N, Honjo MN, Toyoda A, Fujiyama A, Kakutani T, Kudoh H.

Genes (Basel). 2019 Jul 17;10(7). pii: E544. doi: 10.3390/genes10070544.

2.

Related factors, increased mortality and causes of death in patients with rheumatoid arthritis-associated interstitial lung disease.

Kakutani T, Hashimoto A, Tominaga A, Kodama K, Nogi S, Tsuno H, Ogihara H, Nunokawa T, Komiya A, Furukawa H, Tohma S, Matsui T.

Mod Rheumatol. 2019 Jun 7:1-7. doi: 10.1080/14397595.2019.1621462. [Epub ahead of print]

PMID:
31116052
3.

Primed histone demethylation regulates shoot regenerative competency.

Ishihara H, Sugimoto K, Tarr PT, Temman H, Kadokura S, Inui Y, Sakamoto T, Sasaki T, Aida M, Suzuki T, Inagaki S, Morohashi K, Seki M, Kakutani T, Meyerowitz EM, Matsunaga S.

Nat Commun. 2019 Apr 16;10(1):1786. doi: 10.1038/s41467-019-09386-5.

4.

Impact of early inflammatory cytokine elevation after commencement of PD-1 inhibitors to predict efficacy in patients with non-small cell lung cancer.

Ozawa Y, Amano Y, Kanata K, Hasegwa H, Matsui T, Kakutani T, Koyauchi T, Tanahashi M, Niwa H, Yokomura K, Suda T.

Med Oncol. 2019 Mar 1;36(4):33. doi: 10.1007/s12032-019-1255-3.

PMID:
30825015
5.

Squamous Cell Lung Cancer: Methotrexate Withdrawal Induced Spontaneous Regression of Liver Metastases.

Hashimoto A, Kawasaki Y, Tominaga A, Kakutani T, Kodama K, Nogi S, Tsuno H, Ogihara H, Nunokawa T, Ikenaka T, Watai K, Saito I, Matsui T.

J Clin Rheumatol. 2019 Feb 19. doi: 10.1097/RHU.0000000000001010. [Epub ahead of print] No abstract available.

PMID:
30801331
6.

Genome defense against integrated organellar DNA fragments from plastids into plant nuclear genomes through DNA methylation.

Yoshida T, Furihata HY, To TK, Kakutani T, Kawabe A.

Sci Rep. 2019 Feb 14;9(1):2060. doi: 10.1038/s41598-019-38607-6.

7.

DNA Methylation Diversification at the Integrated Organellar DNA-Like Sequence.

Yoshida T, Tarutani Y, Kakutani T, Kawabe A.

Genes (Basel). 2018 Dec 3;9(12). pii: E602. doi: 10.3390/genes9120602.

8.

Preexisting Interstitial Lung Disease and Lung Injury Associated with Irinotecan in Patients with Neoplasms.

Ozawa Y, Koda K, Akahori D, Matsui T, Hasegawa H, Kakutani T, Amano T, Tanahashi M, Niwa H, Kunimoto Y, Yamada K, Yokomura K, Suda T.

Anticancer Res. 2018 Oct;38(10):5937-5941. doi: 10.21873/anticanres.12939.

PMID:
30275222
9.

Efficacy and Tolerability of High-Flow Nasal Cannula Oxygen Therapy for Hypoxemic Respiratory Failure in Patients with Interstitial Lung Disease with Do-Not-Intubate Orders: A Retrospective Single-Center Study.

Koyauchi T, Hasegawa H, Kanata K, Kakutani T, Amano Y, Ozawa Y, Matsui T, Yokomura K, Suda T.

Respiration. 2018;96(4):323-329. doi: 10.1159/000489890. Epub 2018 Jun 28.

PMID:
29954000
10.

Clinical impact of minocycline on afatinib-related rash in patients with non-small cell lung cancer harboring epidermal growth factor receptor mutations.

Goto A, Ozawa Y, Koda K, Akahori D, Koyauchi T, Amano Y, Kakutani T, Sato Y, Hasegawa H, Matsui T, Yokomura K, Suda T.

Respir Investig. 2018 Mar;56(2):179-183. doi: 10.1016/j.resinv.2017.11.009. Epub 2017 Dec 21.

PMID:
29548657
11.

Transposable elements, genome evolution and transgenerational epigenetic variation.

Hosaka A, Kakutani T.

Curr Opin Genet Dev. 2018 Apr;49:43-48. doi: 10.1016/j.gde.2018.02.012. Epub 2018 Mar 8. Review.

PMID:
29525544
12.

Evolution of sequence-specific anti-silencing systems in Arabidopsis.

Hosaka A, Saito R, Takashima K, Sasaki T, Fu Y, Kawabe A, Ito T, Toyoda A, Fujiyama A, Tarutani Y, Kakutani T.

Nat Commun. 2017 Dec 18;8(1):2161. doi: 10.1038/s41467-017-02150-7.

13.

The histone H3 variant H3.3 regulates gene body DNA methylation in Arabidopsis thaliana.

Wollmann H, Stroud H, Yelagandula R, Tarutani Y, Jiang D, Jing L, Jamge B, Takeuchi H, Holec S, Nie X, Kakutani T, Jacobsen SE, Berger F.

Genome Biol. 2017 May 18;18(1):94. doi: 10.1186/s13059-017-1221-3.

14.

Gene-body chromatin modification dynamics mediate epigenome differentiation in Arabidopsis.

Inagaki S, Takahashi M, Hosaka A, Ito T, Toyoda A, Fujiyama A, Tarutani Y, Kakutani T.

EMBO J. 2017 Apr 13;36(8):970-980. doi: 10.15252/embj.201694983. Epub 2017 Jan 18.

15.

A Stress-Activated Transposon in Arabidopsis Induces Transgenerational Abscisic Acid Insensitivity.

Ito H, Kim JM, Matsunaga W, Saze H, Matsui A, Endo TA, Harukawa Y, Takagi H, Yaegashi H, Masuta Y, Masuda S, Ishida J, Tanaka M, Takahashi S, Morosawa T, Toyoda T, Kakutani T, Kato A, Seki M.

Sci Rep. 2016 Mar 15;6:23181. doi: 10.1038/srep23181.

16.

Pasteurella multocida Infective Endocarditis: A Possible Link with Primary Upper Respiratory Tract Infection.

Branch J, Kakutani T, Kuroda S, Shiba Y, Kitagawa I.

Intern Med. 2015;54(24):3225-31. doi: 10.2169/internalmedicine.54.4973. Epub 2015 Dec 15.

17.

DNA Methylation within Transcribed Regions.

To TK, Saze H, Kakutani T.

Plant Physiol. 2015 Aug;168(4):1219-25. doi: 10.1104/pp.15.00543. Epub 2015 Jul 4. Review.

18.

Genome-wide negative feedback drives transgenerational DNA methylation dynamics in Arabidopsis.

Ito T, Tarutani Y, To TK, Kassam M, Duvernois-Berthet E, Cortijo S, Takashima K, Saze H, Toyoda A, Fujiyama A, Colot V, Kakutani T.

PLoS Genet. 2015 Apr 22;11(4):e1005154. doi: 10.1371/journal.pgen.1005154. eCollection 2015 Apr.

20.

Control of transposable elements in Arabidopsis thaliana.

Ito H, Kakutani T.

Chromosome Res. 2014 Jun;22(2):217-23. doi: 10.1007/s10577-014-9417-9. Review.

PMID:
24801341
21.

[Electrocochleographic findings in recurrent idiopathic sudden sensorineural hearing loss].

Ohashi T, Nishino H, Arai Y, Nishimoto Y, Kakutani T, Koizuka I.

Lin Chung Er Bi Yan Hou Tou Jing Wai Ke Za Zhi. 2013 Jul;27(14):775-9. Chinese. No abstract available.

PMID:
24167996
22.

Mechanism for full-length RNA processing of Arabidopsis genes containing intragenic heterochromatin.

Saze H, Kitayama J, Takashima K, Miura S, Harukawa Y, Ito T, Kakutani T.

Nat Commun. 2013;4:2301. doi: 10.1038/ncomms3301.

PMID:
23934508
23.

Mobilization of a plant transposon by expression of the transposon-encoded anti-silencing factor.

Fu Y, Kawabe A, Etcheverry M, Ito T, Toyoda A, Fujiyama A, Colot V, Tarutani Y, Kakutani T.

EMBO J. 2013 Aug 28;32(17):2407-17. doi: 10.1038/emboj.2013.169. Epub 2013 Jul 30.

24.

[Case report; Co-infection with mycoplasma and influenza B resulting in a Guillain-Barré syndrome with anti-galactocerebroside antibody].

Nishiguchi S, Inada H, Kakutani T, Suganami Y, Kitagawa I, Kawada J.

Nihon Naika Gakkai Zasshi. 2013 May 10;102(5):1223-5. Japanese. No abstract available.

PMID:
23847989
25.

What triggers differential DNA methylation of genes and TEs: contribution of body methylation?

Inagaki S, Kakutani T.

Cold Spring Harb Symp Quant Biol. 2012;77:155-60. doi: 10.1101/sqb.2013.77.016212. Epub 2013 Jan 9.

PMID:
23302809
26.

DDM1 (decrease in DNA methylation) genes in rice (Oryza sativa).

Higo H, Tahir M, Takashima K, Miura A, Watanabe K, Tagiri A, Ugaki M, Ishikawa R, Eiguchi M, Kurata N, Sasaki T, Richards E, Takano M, Kishimoto N, Kakutani T, Habu Y.

Mol Genet Genomics. 2012 Oct;287(10):785-92. Epub 2012 Aug 24.

PMID:
22915302
27.

Electrocochleographic findings in recurrent idiopathic sudden sensorineural hearing loss.

Ohashi T, Nishino H, Arai Y, Nishimoto Y, Kakutani T, Koizuka I.

Acta Otolaryngol. 2012 Oct;132(10):1022-7. Epub 2012 Jun 12.

PMID:
22691116
28.

Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrata.

Tsukahara S, Kawabe A, Kobayashi A, Ito T, Aizu T, Shin-i T, Toyoda A, Fujiyama A, Tarutani Y, Kakutani T.

Genes Dev. 2012 Apr 1;26(7):705-13. doi: 10.1101/gad.183871.111. Epub 2012 Mar 19.

29.

RNAi-independent de novo DNA methylation revealed in Arabidopsis mutants of chromatin remodeling gene DDM1.

Sasaki T, Kobayashi A, Saze H, Kakutani T.

Plant J. 2012 Jun;70(5):750-8. doi: 10.1111/j.1365-313X.2012.04911.x. Epub 2012 Mar 6.

30.

HMG domain containing SSRP1 is required for DNA demethylation and genomic imprinting in Arabidopsis.

Ikeda Y, Kinoshita Y, Susaki D, Ikeda Y, Iwano M, Takayama S, Higashiyama T, Kakutani T, Kinoshita T.

Dev Cell. 2011 Sep 13;21(3):589-96. doi: 10.1016/j.devcel.2011.08.013.

31.

Coexistence of trichome variation in a natural plant population: a combined study using ecological and candidate gene approaches.

Kawagoe T, Shimizu KK, Kakutani T, Kudoh H.

PLoS One. 2011;6(7):e22184. doi: 10.1371/journal.pone.0022184. Epub 2011 Jul 19.

32.

Arabidopsis HDA6 regulates locus-directed heterochromatin silencing in cooperation with MET1.

To TK, Kim JM, Matsui A, Kurihara Y, Morosawa T, Ishida J, Tanaka M, Endo T, Kakutani T, Toyoda T, Kimura H, Yokoyama S, Shinozaki K, Seki M.

PLoS Genet. 2011 Apr;7(4):e1002055. doi: 10.1371/journal.pgen.1002055. Epub 2011 Apr 28.

33.

Epigenetic variation in the FWA gene within the genus Arabidopsis.

Fujimoto R, Sasaki T, Kudoh H, Taylor JM, Kakutani T, Dennis ES.

Plant J. 2011 Jun;66(5):831-43. doi: 10.1111/j.1365-313X.2011.04549.x. Epub 2011 Apr 4.

34.

Developmental changes in crossover frequency in Arabidopsis.

Toyota M, Matsuda K, Kakutani T, Terao Morita M, Tasaka M.

Plant J. 2011 Feb;65(4):589-99. doi: 10.1111/j.1365-313X.2010.04440.x. Epub 2011 Jan 13.

35.

Differentiation of epigenetic modifications between transposons and genes.

Saze H, Kakutani T.

Curr Opin Plant Biol. 2011 Feb;14(1):81-7. doi: 10.1016/j.pbi.2010.08.017. Epub 2010 Sep 23. Review.

PMID:
20869294
36.

Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome.

Inagaki S, Miura-Kamio A, Nakamura Y, Lu F, Cui X, Cao X, Kimura H, Saze H, Kakutani T.

EMBO J. 2010 Oct 20;29(20):3496-506. doi: 10.1038/emboj.2010.227. Epub 2010 Sep 10.

37.

Control of genic DNA methylation in Arabidopsis.

Inagaki S, Kakutani T.

J Plant Res. 2010 May;123(3):299-302. doi: 10.1007/s10265-010-0338-1. Epub 2010 Apr 3.

PMID:
20364290
38.

Bursts of retrotransposition reproduced in Arabidopsis.

Tsukahara S, Kobayashi A, Kawabe A, Mathieu O, Miura A, Kakutani T.

Nature. 2009 Sep 17;461(7262):423-6. doi: 10.1038/nature08351. Epub 2009 Sep 6.

PMID:
19734880
39.

Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin.

Schoft VK, Chumak N, Mosiolek M, Slusarz L, Komnenovic V, Brownfield L, Twell D, Kakutani T, Tamaru H.

EMBO Rep. 2009 Sep;10(9):1015-21. doi: 10.1038/embor.2009.152. Epub 2009 Aug 14.

40.

An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites.

Miura A, Nakamura M, Inagaki S, Kobayashi A, Saze H, Kakutani T.

EMBO J. 2009 Apr 22;28(8):1078-86. doi: 10.1038/emboj.2009.59. Epub 2009 Mar 5.

41.

Negative regulation of DNA methylation in plants.

Saze H, Sasaki T, Kakutani T.

Epigenetics. 2008 May-Jun;3(3):122-4. Epub 2008 May 27.

PMID:
18567943
42.

[Mechanisms to control DNA methylation in Arabidopsis thaliana].

Sasaki T, Saze H, Kakutani T.

Tanpakushitsu Kakusan Koso. 2008 Jun;53(7):809-14. Review. Japanese. No abstract available.

PMID:
18536342
43.

Evolution and control of imprinted FWA genes in the genus Arabidopsis.

Fujimoto R, Kinoshita Y, Kawabe A, Kinoshita T, Takashima K, Nordborg M, Nasrallah ME, Shimizu KK, Kudoh H, Kakutani T.

PLoS Genet. 2008 Apr 4;4(4):e1000048. doi: 10.1371/journal.pgen.1000048.

44.

Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana.

Saze H, Shiraishi A, Miura A, Kakutani T.

Science. 2008 Jan 25;319(5862):462-5. doi: 10.1126/science.1150987.

45.
46.

Effects of isoflurane and sevoflurane anesthesia on arteriovenous shunt flow in the lower limb of diabetic patients without autonomic neuropathy.

Negoro T, Mizumoto K, Ogawa K, Hironaka Y, Kakutani T, Hatano Y.

Anesthesiology. 2007 Jul;107(1):45-52.

PMID:
17585214
47.

Control of FWA gene silencing in Arabidopsis thaliana by SINE-related direct repeats.

Kinoshita Y, Saze H, Kinoshita T, Miura A, Soppe WJ, Koornneef M, Kakutani T.

Plant J. 2007 Jan;49(1):38-45. Epub 2006 Nov 27.

48.

Expression and Ca2+ dependency of plasma membrane K+ channels of tobacco suspension cells adapted to salt stress.

Kasukabe N, Watanabe-Sugimoto M, Matsuoka K, Okuma E, Obi I, Nakamura Y, Shimoishi Y, Murata Y, Kakutani T.

Plant Cell Physiol. 2006 Dec;47(12):1674-7. Epub 2006 Nov 2.

PMID:
17082215
49.

Ecotype-specific and chromosome-specific expansion of variant centromeric satellites in Arabidopsis thaliana.

Ito H, Miura A, Takashima K, Kakutani T.

Mol Genet Genomics. 2007 Jan;277(1):23-30. Epub 2006 Oct 11.

PMID:
17033808
50.

Propofol inhibits phorbol 12, 13-dibutyrate-induced, protein kinase C-mediated contraction of rat aortic smooth muscle.

Yu J, Kakutani T, Mizumoto K, Hasegawa A, Hatano Y.

Acta Anaesthesiol Scand. 2006 Oct;50(9):1131-8.

PMID:
16987344

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