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Items: 1 to 50 of 118

1.

Prion soft amyloid core driven self-assembly of globular proteins into bioactive nanofibrils.

Wang W, Navarro S, Azizyan RA, Baño-Polo M, Esperante SA, Kajava AV, Ventura S.

Nanoscale. 2019 Jul 14;11(26):12680-12694. doi: 10.1039/c9nr01755k. Epub 2019 Jun 25.

PMID:
31237592
2.

The HslV Protease from Leishmania major and Its Activation by C-terminal HslU Peptides.

Kebe NM, Samanta K, Singh P, Lai-Kee-Him J, Apicella V, Payrot N, Lauraire N, Legrand B, Lisowski V, Mbang-Benet DE, Pages M, Bastien P, Kajava AV, Bron P, Hernandez JF, Coux O.

Int J Mol Sci. 2019 Feb 26;20(5). pii: E1021. doi: 10.3390/ijms20051021.

3.

Disentangling the complexity of low complexity proteins.

Mier P, Paladin L, Tamana S, Petrosian S, Hajdu-Soltész B, Urbanek A, Gruca A, Plewczynski D, Grynberg M, Bernadó P, Gáspári Z, Ouzounis CA, Promponas VJ, Kajava AV, Hancock JM, Tosatto SCE, Dosztanyi Z, Andrade-Navarro MA.

Brief Bioinform. 2019 Jan 30. doi: 10.1093/bib/bbz007. [Epub ahead of print]

PMID:
30698641
4.

Post-Translational Modifications and Diastolic Calcium Leak Associated to the Novel RyR2-D3638A Mutation Lead to CPVT in Patient-Specific hiPSC-Derived Cardiomyocytes.

Acimovic I, Refaat MM, Moreau A, Salykin A, Reiken S, Sleiman Y, Souidi M, Přibyl J, Kajava AV, Richard S, Lu JT, Chevalier P, Skládal P, Dvořak P, Rotrekl V, Marks AR, Scheinman MM, Lacampagne A, Meli AC.

J Clin Med. 2018 Nov 8;7(11). pii: E423. doi: 10.3390/jcm7110423.

5.

Porins and Amyloids are Coded by Similar Sequence Motifs.

Villain E, Nikekhin AA, Kajava AV.

Proteomics. 2019 Mar;19(6):e1800075. doi: 10.1002/pmic.201800075. Epub 2018 Nov 30.

PMID:
30358094
6.

Protein Co-Aggregation Related to Amyloids: Methods of Investigation, Diversity, and Classification.

Bondarev SA, Antonets KS, Kajava AV, Nizhnikov AA, Zhouravleva GA.

Int J Mol Sci. 2018 Aug 4;19(8). pii: E2292. doi: 10.3390/ijms19082292. Review.

7.

Establishment of Constraints on Amyloid Formation Imposed by Steric Exclusion of Globular Domains.

Azizyan RA, Garro A, Radkova Z, Anikeenko A, Bakulina A, Dumas C, Kajava AV.

J Mol Biol. 2018 Oct 12;430(20):3835-3846. doi: 10.1016/j.jmb.2018.05.038. Epub 2018 Jun 1.

PMID:
29860028
8.

BetaSerpentine: a bioinformatics tool for reconstruction of amyloid structures.

Bondarev SA, Bondareva OV, Zhouravleva GA, Kajava AV.

Bioinformatics. 2018 Feb 15;34(4):599-608. doi: 10.1093/bioinformatics/btx629.

PMID:
29444233
9.

Identification of the Autochaperone Domain in the Type Va Secretion System (T5aSS): Prevalent Feature of Autotransporters with a β-Helical Passenger.

Rojas-Lopez M, Zorgani MA, Kelley LA, Bailly X, Kajava AV, Henderson IR, Polticelli F, Pizza M, Rosini R, Desvaux M.

Front Microbiol. 2018 Jan 5;8:2607. doi: 10.3389/fmicb.2017.02607. eCollection 2017.

10.

Editorial for special issue "Proteins with tandem repeats: sequences, structures and functions"☆.

Kajava AV, Tosatto SCE.

J Struct Biol. 2018 Feb;201(2):86-87. doi: 10.1016/j.jsb.2017.12.011. Epub 2017 Dec 30. No abstract available.

PMID:
29294402
11.

Classification of β-hairpin repeat proteins.

Roche DB, Viet PD, Bakulina A, Hirsh L, Tosatto SCE, Kajava AV.

J Struct Biol. 2018 Feb;201(2):130-138. doi: 10.1016/j.jsb.2017.10.001. Epub 2017 Oct 7.

PMID:
29017817
12.

Usage of a dataset of NMR resolved protein structures to test aggregation versus solubility prediction algorithms.

Roche DB, Villain E, Kajava AV.

Protein Sci. 2017 Sep;26(9):1864-1869. doi: 10.1002/pro.3225. Epub 2017 Jul 15.

13.

Corrigendum: DisProt 7.0: a major update of the database of disordered proteins.

Piovesan D, Tabaro F, Mičetić I, Necci M, Quaglia F, Oldfield CJ, Aspromonte MC, Davey NE, Davidović R, Dosztányi Z, Elofsson A, Gasparini A, Hatos A, Kajava AV, Kalmar L, Leonardi E, Lazar T, Macedo-Ribeiro S, Macossay-Castillo M, Meszaros A, Minervini G, Murvai N, Pujols J, Roche DB, Salladini E, Schad E, Schramm A, Szabo B, Tantos A, Tonello F, Tsirigos KD, Veljković N, Ventura S, Vranken W, Warholm P, Uversky VN, Dunker AK, Longhi S, Tompa P, Tosatto SC.

Nucleic Acids Res. 2017 Jan 4;45(D1):D1123-D1124. doi: 10.1093/nar/gkw1279. Epub 2016 Dec 13. No abstract available.

14.

RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures.

Paladin L, Hirsh L, Piovesan D, Andrade-Navarro MA, Kajava AV, Tosatto SCE.

Nucleic Acids Res. 2017 Apr 7;45(6):3613. doi: 10.1093/nar/gkw1268. No abstract available.

15.

RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures.

Paladin L, Hirsh L, Piovesan D, Andrade-Navarro MA, Kajava AV, Tosatto SC.

Nucleic Acids Res. 2017 Jan 4;45(D1):D308-D312. doi: 10.1093/nar/gkw1136. Epub 2016 Nov 29. Erratum in: Nucleic Acids Res. 2017 Apr 7;45(6):3613.

16.

DisProt 7.0: a major update of the database of disordered proteins.

Piovesan D, Tabaro F, Mičetić I, Necci M, Quaglia F, Oldfield CJ, Aspromonte MC, Davey NE, Davidović R, Dosztányi Z, Elofsson A, Gasparini A, Hatos A, Kajava AV, Kalmar L, Leonardi E, Lazar T, Macedo-Ribeiro S, Macossay-Castillo M, Meszaros A, Minervini G, Murvai N, Pujols J, Roche DB, Salladini E, Schad E, Schramm A, Szabo B, Tantos A, Tonello F, Tsirigos KD, Veljković N, Ventura S, Vranken W, Warholm P, Uversky VN, Dunker AK, Longhi S, Tompa P, Tosatto SC.

Nucleic Acids Res. 2017 Jan 4;45(D1):D219-D227. doi: 10.1093/nar/gkw1056. Epub 2016 Nov 28. Erratum in: Nucleic Acids Res. 2017 Jan 4;45(D1):D1123-D1124.

17.

Tally: a scoring tool for boundary determination between repetitive and non-repetitive protein sequences.

Richard FD, Alves R, Kajava AV.

Bioinformatics. 2016 Jul 1;32(13):1952-8. doi: 10.1093/bioinformatics/btw118. Epub 2016 Mar 7.

PMID:
27153701
18.

Global genetic diversity of the Plasmodium vivax transmission-blocking vaccine candidate Pvs48/45.

Vallejo AF, Martinez NL, Tobon A, Alger J, Lacerda MV, Kajava AV, Arévalo-Herrera M, Herrera S.

Malar J. 2016 Apr 12;15:202. doi: 10.1186/s12936-016-1263-0.

19.

α-Synuclein Amyloid Fibrils with Two Entwined, Asymmetrically Associated Protofibrils.

Dearborn AD, Wall JS, Cheng N, Heymann JB, Kajava AV, Varkey J, Langen R, Steven AC.

J Biol Chem. 2016 Jan 29;291(5):2310-8. doi: 10.1074/jbc.M115.698787. Epub 2015 Dec 7.

20.

In search of the boundary between repetitive and non-repetitive protein sequences.

Richard FD, Kajava AV.

Biochem Soc Trans. 2015 Oct;43(5):807-11. doi: 10.1042/BST20150073. Review.

PMID:
26517886
21.

Single substitution in bacteriophage T4 RNase H alters the ratio between its exo- and endonuclease activities.

Kholod N, Sivogrivov D, Latypov O, Mayorov S, Kuznitsyn R, Kajava AV, Shlyapnikov M, Granovsky I.

Mutat Res. 2015 Nov;781:49-57. doi: 10.1016/j.mrfmmm.2015.09.004. Epub 2015 Sep 24.

PMID:
26432500
22.

TAPO: A combined method for the identification of tandem repeats in protein structures.

Do Viet P, Roche DB, Kajava AV.

FEBS Lett. 2015 Sep 14;589(19 Pt A):2611-9. doi: 10.1016/j.febslet.2015.08.025. Epub 2015 Aug 29. Review.

23.

Restricted mobility of side chains on concave surfaces of solenoid proteins may impart heightened potential for intermolecular interactions.

Ramya L, Gautham N, Chaloin L, Kajava AV.

Proteins. 2015 Sep;83(9):1654-64. doi: 10.1002/prot.24851. Epub 2015 Jul 17.

PMID:
26138156
24.

Structure-based view on [PSI(+)] prion properties.

Bondarev SA, Zhouravleva GA, Belousov MV, Kajava AV.

Prion. 2015;9(3):190-9. doi: 10.1080/19336896.2015.1044186. Review.

25.

Evolution of proteasome regulators in eukaryotes.

Fort P, Kajava AV, Delsuc F, Coux O.

Genome Biol Evol. 2015 May 4;7(5):1363-79. doi: 10.1093/gbe/evv068.

26.

Designs on a curve.

Bazan JF, Kajava AV.

Nat Struct Mol Biol. 2015 Feb;22(2):103-5. doi: 10.1038/nsmb.2966. No abstract available.

PMID:
25650904
27.

Plasmodium falciparum merozoite surface protein 2: epitope mapping and fine specificity of human antibody response against non-polymorphic domains.

Balam S, Olugbile S, Servis C, Diakité M, D'Alessandro A, Frank G, Moret R, Nebie I, Tanner M, Felger I, Smith T, Kajava AV, Spertini F, Corradin G.

Malar J. 2014 Dec 19;13:510. doi: 10.1186/1475-2875-13-510.

28.

Evolutionary link between metazoan RHIM motif and prion-forming domain of fungal heterokaryon incompatibility factor HET-s/HET-s.

Kajava AV, Klopffleisch K, Chen S, Hofmann K.

Sci Rep. 2014 Dec 11;4:7436. doi: 10.1038/srep07436.

29.

A structure-based approach to predict predisposition to amyloidosis.

Ahmed AB, Znassi N, Château MT, Kajava AV.

Alzheimers Dement. 2015 Jun;11(6):681-90. doi: 10.1016/j.jalz.2014.06.007. Epub 2014 Aug 20.

PMID:
25150734
30.

Plasmodium vivax antigen discovery based on alpha-helical coiled coil protein motif.

Céspedes N, Habel C, Lopez-Perez M, Castellanos A, Kajava AV, Servis C, Felger I, Moret R, Arévalo-Herrera M, Corradin G, Herrera S.

PLoS One. 2014 Jun 24;9(6):e100440. doi: 10.1371/journal.pone.0100440. eCollection 2014.

31.

Conformational switching in PolyGln amyloid fibrils resulting from a single amino acid insertion.

Huang RK, Baxa U, Aldrian G, Ahmed AB, Wall JS, Mizuno N, Antzutkin O, Steven AC, Kajava AV.

Biophys J. 2014 May 20;106(10):2134-42. doi: 10.1016/j.bpj.2014.03.047.

32.

TRDistiller: a rapid filter for enrichment of sequence datasets with proteins containing tandem repeats.

Richard FD, Kajava AV.

J Struct Biol. 2014 Jun;186(3):386-91. doi: 10.1016/j.jsb.2014.03.013. Epub 2014 Mar 26.

PMID:
24681324
33.

Drosophila Spag is the homolog of RNA polymerase II-associated protein 3 (RPAP3) and recruits the heat shock proteins 70 and 90 (Hsp70 and Hsp90) during the assembly of cellular machineries.

Benbahouche Nel H, Iliopoulos I, Török I, Marhold J, Henri J, Kajava AV, Farkaš R, Kempf T, Schnölzer M, Meyer P, Kiss I, Bertrand E, Mechler BM, Pradet-Balade B.

J Biol Chem. 2014 Feb 28;289(9):6236-47. doi: 10.1074/jbc.M113.499608. Epub 2014 Jan 6.

34.

RepeatsDB: a database of tandem repeat protein structures.

Di Domenico T, Potenza E, Walsh I, Parra RG, Giollo M, Minervini G, Piovesan D, Ihsan A, Ferrari C, Kajava AV, Tosatto SC.

Nucleic Acids Res. 2014 Jan;42(Database issue):D352-7. doi: 10.1093/nar/gkt1175. Epub 2013 Dec 5.

35.

EpCAM controls actomyosin contractility and cell adhesion by direct inhibition of PKC.

Maghzal N, Kayali HA, Rohani N, Kajava AV, Fagotto F.

Dev Cell. 2013 Nov 11;27(3):263-77. doi: 10.1016/j.devcel.2013.10.003. Epub 2013 Oct 31.

36.

Effect of charged residues in the N-domain of Sup35 protein on prion [PSI+] stability and propagation.

Bondarev SA, Shchepachev VV, Kajava AV, Zhouravleva GA.

J Biol Chem. 2013 Oct 4;288(40):28503-13. doi: 10.1074/jbc.M113.471805. Epub 2013 Aug 21.

37.

Antigenicity and immunogenicity of a novel chimeric peptide antigen based on the P. vivax circumsporozoite protein.

Céspedes N, Arévalo-Herrera M, Felger I, Reed S, Kajava AV, Corradin G, Herrera S.

Vaccine. 2013 Oct 1;31(42):4923-30. doi: 10.1016/j.vaccine.2013.05.082. Epub 2013 Aug 15.

38.

Breaking the amyloidogenicity code: methods to predict amyloids from amino acid sequence.

Ahmed AB, Kajava AV.

FEBS Lett. 2013 Apr 17;587(8):1089-95. doi: 10.1016/j.febslet.2012.12.006. Epub 2012 Dec 20. Review.

39.

Cell biological characterization of the malaria vaccine candidate trophozoite exported protein 1.

Kulangara C, Luedin S, Dietz O, Rusch S, Frank G, Mueller D, Moser M, Kajava AV, Corradin G, Beck HP, Felger I.

PLoS One. 2012;7(10):e46112. doi: 10.1371/journal.pone.0046112. Epub 2012 Oct 8.

40.

Repeat or not repeat?--Statistical validation of tandem repeat prediction in genomic sequences.

Schaper E, Kajava AV, Hauser A, Anisimova M.

Nucleic Acids Res. 2012 Nov 1;40(20):10005-17. doi: 10.1093/nar/gks726. Epub 2012 Aug 25.

41.

PRDB: Protein Repeat DataBase.

Jorda J, Baudrand T, Kajava AV.

Proteomics. 2012 May;12(9):1333-6. doi: 10.1002/pmic.201100534.

PMID:
22589183
42.

Malaria vaccine development using synthetic peptides as a technical platform.

Corradin G, Céspedes N, Verdini A, Kajava AV, Arévalo-Herrera M, Herrera S.

Adv Immunol. 2012;114:107-49. doi: 10.1016/B978-0-12-396548-6.00005-6. Review.

PMID:
22449780
43.

Tandem repeats in proteins: from sequence to structure.

Kajava AV.

J Struct Biol. 2012 Sep;179(3):279-88. doi: 10.1016/j.jsb.2011.08.009. Epub 2011 Aug 24.

PMID:
21884799
44.

Malaria vaccine candidate: design of a multivalent subunit α-helical coiled coil poly-epitope.

Olugbile S, Villard V, Bertholet S, Jafarshad A, Kulangara C, Roussilhon C, Frank G, Agak GW, Felger I, Nebie I, Konate K, Kajava AV, Schuck P, Druilhe P, Spertini F, Corradin G.

Vaccine. 2011 Sep 16;29(40):7090-9. doi: 10.1016/j.vaccine.2011.06.122. Epub 2011 Jul 29.

45.

Identification of residues within tropomodulin-1 responsible for its localization at the pointed ends of the actin filaments in cardiac myocytes.

Tsukada T, Kotlyanskaya L, Huynh R, Desai B, Novak SM, Kajava AV, Gregorio CC, Kostyukova AS.

J Biol Chem. 2011 Jan 21;286(3):2194-204. doi: 10.1074/jbc.M110.186924. Epub 2010 Nov 15.

46.

Long synthetic peptides for the production of vaccines and drugs: a technological platform coming of age.

Corradin G, Kajava AV, Verdini A.

Sci Transl Med. 2010 Sep 22;2(50):50rv3. doi: 10.1126/scitranslmed.3001387. Review.

PMID:
20861510
47.

Protein homorepeats sequences, structures, evolution, and functions.

Jorda J, Kajava AV.

Adv Protein Chem Struct Biol. 2010;79:59-88. doi: 10.1016/S1876-1623(10)79002-7. Review.

PMID:
20621281
48.

Protein tandem repeats - the more perfect, the less structured.

Jorda J, Xue B, Uversky VN, Kajava AV.

FEBS J. 2010 Jun;277(12):2673-82. doi: 10.1111/j.1742-464X.2010.07684.x.

49.

Malaria vaccine: why is it taking so long?

Corradin G, Kajava AV.

Expert Rev Vaccines. 2010 Feb;9(2):111-4. doi: 10.1586/erv.09.154. No abstract available.

PMID:
20109019
50.

Beta arcades: recurring motifs in naturally occurring and disease-related amyloid fibrils.

Kajava AV, Baxa U, Steven AC.

FASEB J. 2010 May;24(5):1311-9. doi: 10.1096/fj.09-145979. Epub 2009 Dec 23. Review.

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