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Items: 8

1.

Enabling precision medicine via standard communication of HTS provenance, analysis, and results.

Alterovitz G, Dean D, Goble C, Crusoe MR, Soiland-Reyes S, Bell A, Hayes A, Suresh A, Purkayastha A, King CH, Taylor D, Johanson E, Thompson EE, Donaldson E, Morizono H, Tsang H, Vora JK, Goecks J, Yao J, Almeida JS, Keeney J, Addepalli K, Krampis K, Smith KM, Guo L, Walderhaug M, Schito M, Ezewudo M, Guimera N, Walsh P, Kahsay R, Gottipati S, Rodwell TC, Bloom T, Lai Y, Simonyan V, Mazumder R.

PLoS Biol. 2018 Dec 31;16(12):e3000099. doi: 10.1371/journal.pbio.3000099. eCollection 2018 Dec.

2.

Identification of key differentially expressed MicroRNAs in cancer patients through pan-cancer analysis.

Hu Y, Dingerdissen H, Gupta S, Kahsay R, Shanker V, Wan Q, Yan C, Mazumder R.

Comput Biol Med. 2018 Dec 1;103:183-197. doi: 10.1016/j.compbiomed.2018.10.021. Epub 2018 Oct 22.

PMID:
30384176
3.

BioMuta and BioXpress: mutation and expression knowledgebases for cancer biomarker discovery.

Dingerdissen HM, Torcivia-Rodriguez J, Hu Y, Chang TC, Mazumder R, Kahsay R.

Nucleic Acids Res. 2018 Jan 4;46(D1):D1128-D1136. doi: 10.1093/nar/gkx907.

4.

Overexpression of RING Domain E3 Ligase ZmXerico1 Confers Drought Tolerance through Regulation of ABA Homeostasis.

Brugière N, Zhang W, Xu Q, Scolaro EJ, Lu C, Kahsay RY, Kise R, Trecker L, Williams RW, Hakimi S, Niu X, Lafitte R, Habben JE.

Plant Physiol. 2017 Nov;175(3):1350-1369. doi: 10.1104/pp.17.01072. Epub 2017 Sep 12.

5.

Structure-guided rule-based annotation of protein functional sites in UniProt knowledgebase.

Vasudevan S, Vinayaka CR, Natale DA, Huang H, Kahsay RY, Wu CH.

Methods Mol Biol. 2011;694:91-105. doi: 10.1007/978-1-60761-977-2_7.

PMID:
21082430
6.

Quasi-consensus-based comparison of profile hidden Markov models for protein sequences.

Kahsay RY, Wang G, Gao G, Liao L, Dunbrack R.

Bioinformatics. 2005 May 15;21(10):2287-93. Epub 2005 Mar 29.

PMID:
15797916
7.
8.

CASA: a server for the critical assessment of protein sequence alignment accuracy.

Kahsay RY, Wang G, Dongre N, Gao G, Dunbrack RL Jr.

Bioinformatics. 2002 Mar;18(3):496-7.

PMID:
11934755

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