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Items: 1 to 50 of 69

1.

Dietary Bovine Milk Exosomes Elicit Changes in Bacterial Communities in C57BL/6 Mice.

Zhou F, Paz HA, Sadri M, Cui J, Kachman SD, Fernando SC, Zempleni J.

Am J Physiol Gastrointest Liver Physiol. 2019 Sep 11. doi: 10.1152/ajpgi.00160.2019. [Epub ahead of print]

PMID:
31509432
2.

Detection of Atypical Porcine Pestivirus Genome in Newborn Piglets Affected by Congenital Tremor and High Pre-weaning Mortality.

Sutton KM, Lahmers KK, Harris SP, Wijesena HR, Mote BE, Kachman SD, Borza T, Ciobanu DC.

J Anim Sci. 2019 Aug 9. pii: skz267. doi: 10.1093/jas/skz267. [Epub ahead of print]

PMID:
31396615
3.

Evaluation of genotyping concordance for commercial bovine SNP arrays using quality-assurance samples.

Wu XL, Xu J, Li H, Ferretti R, He J, Qiu J, Xiao Q, Simpson B, Michell T, Kachman SD, Tait RG Jr, Bauck S.

Anim Genet. 2019 Aug;50(4):367-371. doi: 10.1111/age.12800. Epub 2019 Jun 6.

PMID:
31172566
4.

Genetic relationships among sperm quality traits of Duroc boars collected during the summer season.

Gruhot T, Gray K, Brown V, Huang Y, Kachman SD, Spangler ML, Mote B.

Anim Reprod Sci. 2019 Jul;206:85-92. doi: 10.1016/j.anireprosci.2019.05.012. Epub 2019 May 24.

PMID:
31151862
5.

Evaluation of genotype quality parameters for SowPro90, a new genotyping array for swine1.

Wijesena HR, Rohrer GA, Nonneman DJ, Keel BN, Petersen JL, Kachman SD, Ciobanu DC.

J Anim Sci. 2019 Jul 30;97(8):3262-3273. doi: 10.1093/jas/skz185.

PMID:
31150541
6.

The impact of clustering methods for cross-validation, choice of phenotypes, and genotyping strategies on the accuracy of genomic predictions.

Baller JL, Howard JT, Kachman SD, Spangler ML.

J Anim Sci. 2019 Apr 3;97(4):1534-1549. doi: 10.1093/jas/skz055.

PMID:
30721970
7.

Coordinated regulation of transcription by CcpA and the Staphylococcus aureus two-component system HptRS.

Reed JM, Olson S, Brees DF, Griffin CE, Grove RA, Davis PJ, Kachman SD, Adamec J, Somerville GA.

PLoS One. 2018 Dec 12;13(12):e0207161. doi: 10.1371/journal.pone.0207161. eCollection 2018.

8.

Synaptogyrin-2 influences replication of Porcine circovirus 2.

Walker LR, Engle TB, Vu H, Tosky ER, Nonneman DJ, Smith TPL, Borza T, Burkey TE, Plastow GS, Kachman SD, Ciobanu DC.

PLoS Genet. 2018 Oct 31;14(10):e1007750. doi: 10.1371/journal.pgen.1007750. eCollection 2018 Oct.

9.

The heritability of pampiniform plexus vessel size and varicocoele in boars.

Gruhot TR, Rempel LA, Spangler ML, Kachman SD, Mote BE.

Reprod Domest Anim. 2019 Feb;54(2):270-274. doi: 10.1111/rda.13350. Epub 2018 Oct 22.

PMID:
30246894
10.

The impact of selective genotyping on the response to selection using single-step genomic best linear unbiased prediction.

Howard JT, Rathje TA, Bruns CE, Wilson-Wells DF, Kachman SD, Spangler ML.

J Anim Sci. 2018 Nov 21;96(11):4532-4542. doi: 10.1093/jas/sky330.

PMID:
30107560
11.

The impact of truncating data on the predictive ability for single-step genomic best linear unbiased prediction.

Howard JT, Rathje TA, Bruns CE, Wilson-Wells DF, Kachman SD, Spangler ML.

J Anim Breed Genet. 2018 Jun 8. doi: 10.1111/jbg.12334. [Epub ahead of print]

PMID:
29882604
12.

Genome-wide association study for feed efficiency traits using SNP and haplotype models.

Schweer KR, Kachman SD, Kuehn LA, Freetly HC, Pollak JE, Spangler ML.

J Anim Sci. 2018 Jun 4;96(6):2086-2098. doi: 10.1093/jas/sky119.

13.

Comparing strategies for selection of low-density SNPs for imputation-mediated genomic prediction in U. S. Holsteins.

He J, Xu J, Wu XL, Bauck S, Lee J, Morota G, Kachman SD, Spangler ML.

Genetica. 2018 Apr;146(2):137-149. doi: 10.1007/s10709-017-0004-9. Epub 2017 Dec 14.

PMID:
29243001
14.

GENOMICS SYMPOSIUM: Using genomic approaches to uncover sources of variation in age at puberty and reproductive longevity in sows.

Wijesena HR, Lents CA, Riethoven JJ, Trenhaile-Grannemann MD, Thorson JF, Keel BN, Miller PS, Spangler ML, Kachman SD, Ciobanu DC.

J Anim Sci. 2017 Sep;95(9):4196-4205. doi: 10.2527/jas2016.1334.

PMID:
28992028
15.

A 16.7 kb deletion in Sipa1l3 is associated with juvenile cataract in mice.

Walker LR, Tosky ER, Sutton KM, Griess R, Abebe MD, Barnes SY, Cunnigham T, Kachman SD, Nielsen MK, Ciobanu DC.

Mamm Genome. 2017 Dec;28(11-12):515-519. doi: 10.1007/s00335-017-9720-9. Epub 2017 Sep 26.

16.

The impact of training strategies on the accuracy of genomic predictors in United States Red Angus cattle.

Lee J, Kachman SD, Spangler ML.

J Anim Sci. 2017 Aug;95(8):3406-3414. doi: 10.2527/jas.2017.1604.

PMID:
28805929
17.

Breed effects and genetic parameter estimates for calving difficulty and birth weight in a multibreed population.

Ahlberg CM, Kuehn LA, Thallman RM, Kachman SD, Snelling WM, Spangler ML.

J Anim Sci. 2016 May;94(5):1857-64. doi: 10.2527/jas.2015-0161.

PMID:
27285683
18.

Long-term selection for litter size in swine results in shifts in allelic frequency in regions involved in reproductive processes.

Trenhaile MD, Petersen JL, Kachman SD, Johnson RK, Ciobanu DC.

Anim Genet. 2016 Oct;47(5):534-42. doi: 10.1111/age.12448. Epub 2016 May 26.

PMID:
27226276
19.

Quantitative trait locus mapping and functional genomics of an organophosphate resistance trait in the western corn rootworm, Diabrotica virgifera virgifera.

Coates BS, Alves AP, Wang H, Zhou X, Nowatzki T, Chen H, Rangasamy M, Robertson HM, Whitfield CW, Walden KK, Kachman SD, French BW, Meinke LJ, Hawthorne D, Abel CA, Sappington TW, Siegfried BD, Miller NJ.

Insect Mol Biol. 2016 Feb;25(1):1-15. doi: 10.1111/imb.12194. Epub 2015 Nov 14.

20.

Evaluation of reduced subsets of single nucleotide polymorphisms for the prediction of age at puberty in sows.

Lucot KL, Spangler ML, Trenhaile MD, Kachman SD, Ciobanu DC.

Anim Genet. 2015 Aug;46(4):403-9. doi: 10.1111/age.12310. Epub 2015 Jun 9.

PMID:
26059234
21.

Genome-wide analysis of TNF-alpha response in pigs challenged with porcine circovirus 2b.

Kreikemeier CA, Engle TB, Lucot KL, Kachman SD, Burkey TE, Ciobanu DC.

Anim Genet. 2015 Apr;46(2):205-8. doi: 10.1111/age.12262. Epub 2015 Jan 23.

22.

Estimation of breed-specific heterosis effects for birth, weaning, and yearling weight in cattle.

Schiermiester LN, Thallman RM, Kuehn LA, Kachman SD, Spangler ML.

J Anim Sci. 2015 Jan;93(1):46-52. doi: 10.2527/jas.2014-8493.

PMID:
25568356
23.

Variation in time and magnitude of immune response and viremia in experimental challenges with Porcine circovirus 2b.

Engle TB, Jobman EE, Moural TW, McKnite AM, Bundy JW, Barnes SY, Davis EH, Galeota JA, Burkey TE, Plastow GS, Kachman SD, Ciobanu DC.

BMC Vet Res. 2014 Dec 4;10:286. doi: 10.1186/s12917-014-0286-4.

24.

QTLs associated with dry matter intake, metabolic mid-test weight, growth and feed efficiency have little overlap across 4 beef cattle studies.

Saatchi M, Beever JE, Decker JE, Faulkner DB, Freetly HC, Hansen SL, Yampara-Iquise H, Johnson KA, Kachman SD, Kerley MS, Kim J, Loy DD, Marques E, Neibergs HL, Pollak EJ, Schnabel RD, Seabury CM, Shike DW, Snelling WM, Spangler ML, Weaber RL, Garrick DJ, Taylor JF.

BMC Genomics. 2014 Nov 20;15:1004. doi: 10.1186/1471-2164-15-1004.

25.

Genomic analysis of the differential response to experimental infection with porcine circovirus 2b.

McKnite AM, Bundy JW, Moural TW, Tart JK, Johnson TP, Jobman EE, Barnes SY, Qiu JK, Peterson DA, Harris SP, Rothschild MF, Galeota JA, Johnson RK, Kachman SD, Ciobanu DC.

Anim Genet. 2014 Apr;45(2):205-14. doi: 10.1111/age.12125. Epub 2014 Jan 21.

PMID:
24444103
26.

Beef cattle body temperature during climatic stress: a genome-wide association study.

Howard JT, Kachman SD, Snelling WM, Pollak EJ, Ciobanu DC, Kuehn LA, Spangler ML.

Int J Biometeorol. 2014 Sep;58(7):1665-72. doi: 10.1007/s00484-013-0773-5. Epub 2013 Dec 22.

PMID:
24362770
27.

Comparison of molecular breeding values based on within- and across-breed training in beef cattle.

Kachman SD, Spangler ML, Bennett GL, Hanford KJ, Kuehn LA, Snelling WM, Thallman RM, Saatchi M, Garrick DJ, Schnabel RD, Taylor JF, Pollak EJ.

Genet Sel Evol. 2013 Aug 16;45:30. doi: 10.1186/1297-9686-45-30.

28.

The change in differing leukocyte populations during vaccination to bovine respiratory disease and their correlations with lung scores, health records, and average daily gain.

Leach RJ, Chitko-McKown CG, Bennett GL, Jones SA, Kachman SD, Keele JW, Leymaster KA, Thallman RM, Kuehn LA.

J Anim Sci. 2013 Aug;91(8):3564-73. doi: 10.2527/jas.2012-5911. Epub 2013 Jun 4.

PMID:
23736052
29.

Drosophila melanogaster Selection for Survival after Infection with Bacillus cereus Spores: Evolutionary Genetic and Phenotypic Investigations of Respiration and Movement.

Ma J, Benson AK, Kachman SD, Jacobsen DJ, Harshman LG.

Int J Evol Biol. 2013;2013:576452. doi: 10.1155/2013/576452. Epub 2013 Mar 21.

30.

The effect of myostatin genotype on body temperature during extreme temperature events.

Howard JT, Kachman SD, Nielsen MK, Mader TL, Spangler ML.

J Anim Sci. 2013 Jul;91(7):3051-8. doi: 10.2527/jas.2012-6180. Epub 2013 Apr 9.

PMID:
23572263
31.

Genome-wide prediction of age at puberty and reproductive longevity in sows.

Tart JK, Johnson RK, Bundy JW, Ferdinand NN, McKnite AM, Wood JR, Miller PS, Rothschild MF, Spangler ML, Garrick DJ, Kachman SD, Ciobanu DC.

Anim Genet. 2013 Aug;44(4):387-97. doi: 10.1111/age.12028. Epub 2013 Feb 26.

32.

Drosophila melanogaster Selection for Survival of Bacillus cereus Infection: Life History Trait Indirect Responses.

Ma J, Benson AK, Kachman SD, Hu Z, Harshman LG.

Int J Evol Biol. 2012;2012:935970. doi: 10.1155/2012/935970. Epub 2012 Oct 9.

33.

Inverse relationship between heat stable enterotoxin-b induced fluid accumulation and adherence of F4ac-positive enterotoxigenic Escherichia coli in ligated jejunal loops of F4ab/ac fimbria receptor-positive swine.

Erume J, Wijemanne P, Berberov EM, Kachman SD, Oestmann DJ, Francis DH, Moxley RA.

Vet Microbiol. 2013 Jan 25;161(3-4):315-24. doi: 10.1016/j.vetmic.2012.07.048. Epub 2012 Aug 3.

PMID:
22901529
34.

Murine gut microbiota is defined by host genetics and modulates variation of metabolic traits.

McKnite AM, Perez-Munoz ME, Lu L, Williams EG, Brewer S, Andreux PA, Bastiaansen JW, Wang X, Kachman SD, Auwerx J, Williams RW, Benson AK, Peterson DA, Ciobanu DC.

PLoS One. 2012;7(6):e39191. doi: 10.1371/journal.pone.0039191. Epub 2012 Jun 18.

35.

Evolution of starvation resistance in Drosophila melanogaster: measurement of direct and correlated responses to artificial selection.

Schwasinger-Schmidt TE, Kachman SD, Harshman LG.

J Evol Biol. 2012 Feb;25(2):378-87. doi: 10.1111/j.1420-9101.2011.02428.x. Epub 2011 Dec 8.

36.

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors.

Benson AK, Kelly SA, Legge R, Ma F, Low SJ, Kim J, Zhang M, Oh PL, Nehrenberg D, Hua K, Kachman SD, Moriyama EN, Walter J, Peterson DA, Pomp D.

Proc Natl Acad Sci U S A. 2010 Nov 2;107(44):18933-8. doi: 10.1073/pnas.1007028107. Epub 2010 Oct 11.

37.

Bioassays of compounds with potential juvenoid activity on Drosophila melanogaster: juvenile hormone III, bisepoxide juvenile hormone III and methyl farnesoates.

Harshman LG, Song KD, Casas J, Schuurmans A, Kuwano E, Kachman SD, Riddiford LM, Hammock BD.

J Insect Physiol. 2010 Oct;56(10):1465-70. doi: 10.1016/j.jinsphys.2010.06.003. Epub 2010 Jul 3.

38.

Transcriptional profiling of the sperm storage organs of Drosophila melanogaster.

Prokupek AM, Kachman SD, Ladunga I, Harshman LG.

Insect Mol Biol. 2009 Aug;18(4):465-75. doi: 10.1111/j.1365-2583.2009.00887.x. Epub 2009 Apr 24.

PMID:
19453766
39.

Genomic instability in regions adjacent to a highly conserved pch prophage in Escherichia coli O157:H7 generates diversity in expression patterns of the LEE pathogenicity island.

Yang Z, Kim J, Zhang C, Zhang M, Nietfeldt J, Southward CM, Surette MG, Kachman SD, Benson AK.

J Bacteriol. 2009 Jun;191(11):3553-68. doi: 10.1128/JB.01738-08. Epub 2009 Mar 27.

40.

Effects of social interactions on empirical responses to selection for average daily gain of boars.

Chen CY, Johnson RK, Newman S, Kachman SD, Van Vleck LD.

J Anim Sci. 2009 Mar;87(3):844-9. doi: 10.2527/jas.2008-0937. Epub 2008 Nov 7.

PMID:
18997079
41.

Estimation of genetic parameters for average daily gain using models with competition effects.

Chen CY, Kachman SD, Johnson RK, Newman S, Van Vleck LD.

J Anim Sci. 2008 Oct;86(10):2525-30. doi: 10.2527/jas.2007-0660. Epub 2008 Jun 6.

PMID:
18539840
42.

Comparison of the contributions of heat-labile enterotoxin and heat-stable enterotoxin b to the virulence of enterotoxigenic Escherichia coli in F4ac receptor-positive young pigs.

Erume J, Berberov EM, Kachman SD, Scott MA, Zhou Y, Francis DH, Moxley RA.

Infect Immun. 2008 Jul;76(7):3141-9. doi: 10.1128/IAI.01743-07. Epub 2008 Apr 21.

43.

Estimates of genetic parameters for Holstein cows for test-day yield traits with a random regression cubic spline model.

DeGroot BJ, Keown JF, Van Vleck LD, Kachman SD.

Genet Mol Res. 2007 Jun 30;6(2):434-44.

PMID:
17952867
44.
45.

Variation in herbivore-mediated indirect effects of an invasive plant on a native plant.

Russell FL, Louda SM, Rand TA, Kachman SD.

Ecology. 2007 Feb;88(2):413-23.

PMID:
17479759
46.

Evaluation of metals in a defined medium for Pichia pastoris expressing recombinant beta-galactosidase.

Plantz BA, Nickerson K, Kachman SD, Schlegel VL.

Biotechnol Prog. 2007 May-Jun;23(3):687-92. Epub 2007 Mar 31.

PMID:
17397184
47.

Pregnancy rate and first-service conception rate in Angus heifers.

Bormann JM, Totir LR, Kachman SD, Fernando RL, Wilson DE.

J Anim Sci. 2006 Aug;84(8):2022-5.

PMID:
16864860
48.

A quantitative trait locus analysis of natural genetic variation for Drosophila melanogaster oxidative stress survival.

Wang Y, Pot D, Kachman SD, Nuzhdin SV, Harshman LG.

J Hered. 2006 Jul-Aug;97(4):355-66. Epub 2006 Jun 22.

PMID:
16793864
49.

Sparse inverse of covariance matrix of QTL effects with incomplete marker data.

Thallman RM, Hanford KJ, Kachman SD, Van Vleck LD.

Stat Appl Genet Mol Biol. 2004;3:Article30. Epub 2004 Nov 9.

PMID:
16646810
50.

Effects of supplementation of whole corn germ on reproductive performance, calf performance, and leptin concentration in primiparous and mature beef cows.

Martin JL, Rasby RJ, Brink DR, Lindquist RU, Keisler DH, Kachman SD.

J Anim Sci. 2005 Nov;83(11):2663-70.

PMID:
16230666

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