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Items: 23

1.

Terminal neuron localization to the upper cortical plate is controlled by the transcription factor NEUROD2.

Guzelsoy G, Akkaya C, Atak D, Dunn CD, Kabakcioglu A, Ozlu N, Ince-Dunn G.

Sci Rep. 2019 Dec 23;9(1):19697. doi: 10.1038/s41598-019-56171-x.

2.

Role of Helicity in DNA Hairpin Folding Dynamics.

Li H, Kabakçıoğlu A.

Phys Rev Lett. 2018 Sep 28;121(13):138101. doi: 10.1103/PhysRevLett.121.138101.

PMID:
30312038
3.

NEUROD2 Regulates Stim1 Expression and Store-Operated Calcium Entry in Cortical Neurons.

Guner G, Guzelsoy G, Isleyen FS, Sahin GS, Akkaya C, Bayam E, Kotan EI, Kabakcioglu A, Ince-Dunn G.

eNeuro. 2017 Mar 9;4(1). pii: ENEURO.0255-16.2017. doi: 10.1523/ENEURO.0255-16.2017. eCollection 2017 Jan-Feb.

4.

Coherent organization in gene regulation: a study on six networks.

Aral N, Kabakçıoğlu A.

Phys Biol. 2016 May 12;13(2):026006. doi: 10.1088/1478-3975/13/2/026006.

PMID:
27171925
5.

Genome-wide target analysis of NEUROD2 provides new insights into regulation of cortical projection neuron migration and differentiation.

Bayam E, Sahin GS, Guzelsoy G, Guner G, Kabakcioglu A, Ince-Dunn G.

BMC Genomics. 2015 Sep 5;16:681. doi: 10.1186/s12864-015-1882-9.

6.

Coherent regulation in yeast's cell-cycle network.

Aral N, Kabakçıoğlu A.

Phys Biol. 2015 May 13;12(3):036002. doi: 10.1088/1478-3975/12/3/036002.

PMID:
25970087
7.

Mode coupling points to functionally important residues in myosin II.

Varol O, Yuret D, Erman B, Kabakçıoğlu A.

Proteins. 2014 Sep;82(9):1777-86. doi: 10.1002/prot.24531. Epub 2014 Mar 31.

PMID:
24677138
8.

Denaturation of circular DNA: supercoils and overtwist.

Bar A, Kabakçıoğlu A, Mukamel D.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Dec;86(6 Pt 1):061904. Epub 2012 Dec 11.

PMID:
23367973
9.

Deep spin-glass hysteresis-area collapse and scaling in the three-dimensional ±J Ising model.

Sarıyer OS, Kabakçıoğlu A, Berker AN.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Oct;86(4 Pt 1):041107. Epub 2012 Oct 5.

PMID:
23214529
10.

Macroscopic loop formation in circular DNA denaturation.

Kabakçıoğlu A, Bar A, Mukamel D.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 May;85(5 Pt 1):051919. Epub 2012 May 29.

PMID:
23004799
11.

Anharmonicity, mode-coupling and entropy in a fluctuating native protein.

Kabakçioğlu A, Yuret D, Gür M, Erman B.

Phys Biol. 2010 Oct 26;7(4):046005. doi: 10.1088/1478-3975/7/4/046005.

PMID:
20978313
12.

Twist-writhe partitioning in a coarse-grained DNA minicircle model.

Sayar M, Avşaroğlu B, Kabakçioğlu A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Apr;81(4 Pt 1):041916. Epub 2010 Apr 22.

PMID:
20481762
13.

Anomalies in the transcriptional regulatory network of the yeast Saccharomyces cerevisiae.

Tuğrul M, Kabakçioğlu A.

J Theor Biol. 2010 Apr 7;263(3):328-36. doi: 10.1016/j.jtbi.2009.12.008. Epub 2009 Dec 22.

PMID:
20004671
14.

Supercoil formation in DNA denaturation.

Kabakçioğlu A, Orlandini E, Mukamel D.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jul;80(1 Pt 1):010903. Epub 2009 Jul 10.

PMID:
19658646
15.

CAN: chain of nodes approach to direct rule induction.

Kabakcioglu AM.

IEEE Trans Syst Man Cybern B Cybern. 1999;29(6):758-70. doi: 10.1109/3477.809030.

PMID:
18252355
16.

Percolation transition in a dynamically clustered network.

Zen A, Kabakçioğlu A, Stella AL.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Aug;76(2 Pt 2):026110. Epub 2007 Aug 20.

PMID:
17930107
18.

Scale-free network hidden in a collapsing polymer.

Kabakçioğlu A, Stella AL.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Nov;72(5 Pt 2):055102. Epub 2005 Nov 18.

PMID:
16383674
19.

Pseudoknots in a homopolymer.

Kabakçioğlu A, Stella AL.

Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Jul;70(1 Pt 1):011802. Epub 2004 Jul 20.

PMID:
15324079
20.

Statistical properties of contact vectors.

Kabakçioglu A, Kanter I, Vendruscolo M, Domany E.

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Apr;65(4 Pt 1):041904. Epub 2002 Mar 18.

PMID:
12005870
21.

Hard-spin mean-field theory: A systematic derivation and exact correlations in one dimension

Kabakcioglu A.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Apr;61(4 Pt A):3366-8.

PMID:
11088110
22.

Delocalization transition of a rough adsorption-reaction interface

Kaya H, Kabakcioglu A, Erzan A.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Feb;61(2):1102-5.

PMID:
11046379
23.

Closed-form solutions and free energy of hard-spin mean-field theory of a fully frustrated system.

Kabakçioglu A, Nihat Berker A, Cemal Yalabik M.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1994 Apr;49(4):2680-2683. No abstract available.

PMID:
9961531

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