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Protein Paucimannosylation is an Enriched N-glycosylation Signature of Human Cancers.

Chatterjee S, Lee LY, Kawahara R, Abrahams JL, Adamczyk B, Anugraham M, Ashwood C, Sumer-Bayraktar Z, Briggs MT, Chik JHL, Everest-Dass A, Förster S, Hinneburg H, Leite KRM, Loke I, Möginger U, Moh ESX, Nakano M, Recuero S, Sethi MK, Srougi M, Stavenhagen K, Venkatakrishnan V, Wongtrakul-Kish K, Diestel S, Hoffmann P, Karlsson NG, Kolarich D, Molloy MP, Muders MH, Oehler MK, Packer NH, Palmisano G, Thaysen-Andersen M.

Proteomics. 2019 Aug 16:e1900010. doi: 10.1002/pmic.201900010. [Epub ahead of print]


Reduced sialyl-Lewisx on salivary MUC7 from patients with burning mouth syndrome.

Acharya S, Jin C, Bylund J, Shen Q, Kamali-Moghaddam M, Jontell M, Carlén A, Karlsson NG.

Mol Omics. 2019 Aug 15. doi: 10.1039/c9mo00061e. [Epub ahead of print]


Towards a standardized bioinformatics infrastructure for N- and O-glycomics.

Rojas-Macias MA, Mariethoz J, Andersson P, Jin C, Venkatakrishnan V, Aoki NP, Shinmachi D, Ashwood C, Madunic K, Zhang T, Miller RL, Horlacher O, Struwe WB, Watanabe Y, Okuda S, Levander F, Kolarich D, Rudd PM, Wuhrer M, Kettner C, Packer NH, Aoki-Kinoshita KF, Lisacek F, Karlsson NG.

Nat Commun. 2019 Jul 22;10(1):3275. doi: 10.1038/s41467-019-11131-x. Review.


Separation of Isomeric O-Glycans by Ion Mobility and Liquid Chromatography-Mass Spectrometry.

Jin C, Harvey DJ, Struwe WB, Karlsson NG.

Anal Chem. 2019 Aug 20;91(16):10604-10613. doi: 10.1021/acs.analchem.9b01772. Epub 2019 Aug 1.


Deciphering Isomers with a Multiple Reaction Monitoring Method for the Complete Detectable O-Glycan Repertoire of the Candidate Therapeutic, Lubricin.

Flowers SA, Lane CS, Karlsson NG.

Anal Chem. 2019 Aug 6;91(15):9819-9827. doi: 10.1021/acs.analchem.9b01485. Epub 2019 Jul 11.


A targeted proteomics approach reveals a serum protein signature as diagnostic biomarker for resectable gastric cancer.

Shen Q, Polom K, Williams C, de Oliveira FMS, Guergova-Kuras M, Lisacek F, Karlsson NG, Roviello F, Kamali-Moghaddam M.

EBioMedicine. 2019 Jun;44:322-333. doi: 10.1016/j.ebiom.2019.05.044. Epub 2019 May 28.


Distinct glycosylation in membrane proteins within neonatal versus adult myocardial tissue.

Contessotto P, Ellis BW, Jin C, Karlsson NG, Zorlutuna P, Kilcoyne M, Pandit A.

Matrix Biol. 2019 May 17. pii: S0945-053X(19)30045-9. doi: 10.1016/j.matbio.2019.05.001. [Epub ahead of print]


Exploring the Arctic Charr Intestinal Glycome: Evidence of Increased N-Glycolylneuraminic Acid Levels and Changed Host-Pathogen Interactions in Response to Inflammation.

Venkatakrishnan V, Padra JT, Sundh H, Sundell K, Jin C, Langeland M, Carlberg H, Vidakovic A, Lundh T, Karlsson NG, Lindén SK.

J Proteome Res. 2019 Apr 5;18(4):1760-1773. doi: 10.1021/acs.jproteome.8b00973. Epub 2019 Mar 19.


Helicobacter suis infection alters glycosylation and decreases the pathogen growth inhibiting effect and binding avidity of gastric mucins.

Padra M, Adamczyk B, Flahou B, Erhardsson M, Chahal G, Smet A, Jin C, Thorell A, Ducatelle R, Haesebrouck F, Karlsson NG, Lindén SK.

Mucosal Immunol. 2019 May;12(3):784-794. doi: 10.1038/s41385-019-0154-4. Epub 2019 Mar 7.


GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical.

Alocci D, Mariethoz J, Gastaldello A, Gasteiger E, Karlsson NG, Kolarich D, Packer NH, Lisacek F.

J Proteome Res. 2019 Feb 1;18(2):664-677. doi: 10.1021/acs.jproteome.8b00766. Epub 2019 Jan 15.


BabA-mediated adherence of pediatric ulcerogenic H. pylori strains to gastric mucins at neutral and acidic pH.

Quintana-Hayashi MP, Rocha R, Padra M, Thorell A, Jin C, Karlsson NG, Roxo-Rosa M, Oleastro M, Lindén SK.

Virulence. 2018;9(1):1699-1717. doi: 10.1080/21505594.2018.1532243.


A novel ulvan lyase family with broad-spectrum activity from the ulvan utilisation loci of Formosa agariphila KMM 3901.

Konasani VR, Jin C, Karlsson NG, Albers E.

Sci Rep. 2018 Oct 2;8(1):14713. doi: 10.1038/s41598-018-32922-0.


The Thomsen-Friedenreich Antigen: A Highly Sensitive and Specific Predictor of Microsatellite Instability in Gastric Cancer.

Mereiter S, Polom K, Williams C, Polonia A, Guergova-Kuras M, Karlsson NG, Roviello F, Magalhães A, Reis CA.

J Clin Med. 2018 Sep 5;7(9). pii: E256. doi: 10.3390/jcm7090256.


Isomeric Separation and Recognition of Anionic and Zwitterionic N-glycans from Royal Jelly Glycoproteins.

Hykollari A, Malzl D, Eckmair B, Vanbeselaere J, Scheidl P, Jin C, Karlsson NG, Wilson IBH, Paschinger K.

Mol Cell Proteomics. 2018 Nov;17(11):2177-2196. doi: 10.1074/mcp.RA117.000462. Epub 2018 Aug 13.


Glycomics@ExPASy: Bridging the Gap.

Mariethoz J, Alocci D, Gastaldello A, Horlacher O, Gasteiger E, Rojas-Macias M, Karlsson NG, Packer NH, Lisacek F.

Mol Cell Proteomics. 2018 Nov;17(11):2164-2176. doi: 10.1074/mcp.RA118.000799. Epub 2018 Aug 10.


Higher Energy Collisional Dissociation Mass Spectrometry of Sulfated O-Linked Oligosaccharides.

Issa SMA, Vitiazeva V, Hayes CA, Karlsson NG.

J Proteome Res. 2018 Sep 7;17(9):3259-3267. doi: 10.1021/acs.jproteome.8b00376. Epub 2018 Aug 13.


Cracking the Sugar Code by Mass Spectrometry : An Invited Perspective in Honor of Dr. Catherine E. Costello, Recipient of the 2017 ASMS Distinguished Contribution Award.

Mirgorodskaya E, Karlsson NG, Sihlbom C, Larson G, Nilsson CL.

J Am Soc Mass Spectrom. 2018 Jun;29(6):1065-1074. doi: 10.1007/s13361-018-1912-3. Epub 2018 Apr 11.


Helicobacter suis binding to carbohydrates on human and porcine gastric mucins and glycolipids occurs via two modes.

Padra M, Adamczyk B, Benktander J, Flahou B, Skoog EC, Padra JT, Smet A, Jin C, Ducatelle R, Samuelsson T, Haesebrouck F, Karlsson NG, Teneberg S, Lindén SK.

Virulence. 2018 Dec 31;9(1):898-918. doi: 10.1080/21505594.2018.1460979.


Sample handling of gastric tissue and O-glycan alterations in paired gastric cancer and non-tumorigenic tissues.

Adamczyk B, Jin C, Polom K, Muñoz P, Rojas-Macias MA, Zeeberg D, Borén M, Roviello F, Karlsson NG.

Sci Rep. 2018 Jan 10;8(1):242. doi: 10.1038/s41598-017-18299-6.


Detection of post-translational modifications using solid-phase proximity ligation assay.

Oliveira FMS, Mereiter S, Lönn P, Siart B, Shen Q, Heldin J, Raykova D, Karlsson NG, Polom K, Roviello F, Reis CA, Kamali-Moghaddam M.

N Biotechnol. 2018 Oct 25;45:51-59. doi: 10.1016/j.nbt.2017.10.005. Epub 2017 Oct 31.


Lubricin binds cartilage proteins, cartilage oligomeric matrix protein, fibronectin and collagen II at the cartilage surface.

Flowers SA, Zieba A, Örnros J, Jin C, Rolfson O, Björkman LI, Eisler T, Kalamajski S, Kamali-Moghaddam M, Karlsson NG.

Sci Rep. 2017 Oct 13;7(1):13149. doi: 10.1038/s41598-017-13558-y.


GlyTouCan: an accessible glycan structure repository.

Tiemeyer M, Aoki K, Paulson J, Cummings RD, York WS, Karlsson NG, Lisacek F, Packer NH, Campbell MP, Aoki NP, Fujita A, Matsubara M, Shinmachi D, Tsuchiya S, Yamada I, Pierce M, Ranzinger R, Narimatsu H, Aoki-Kinoshita KF.

Glycobiology. 2017 Oct 1;27(10):915-919. doi: 10.1093/glycob/cwx066.


Glycoforest 1.0.

Horlacher O, Jin C, Alocci D, Mariethoz J, Müller M, Karlsson NG, Lisacek F.

Anal Chem. 2017 Oct 17;89(20):10932-10940. doi: 10.1021/acs.analchem.7b02754. Epub 2017 Sep 25.


Glycomics and Glycoproteomics.

Rudd P, Karlsson NG, Khoo KH, Packer NH.

In: Varki A, Cummings RD, Esko JD, Stanley P, Hart GW, Aebi M, Darvill AG, Kinoshita T, Packer NH, Prestegard JH, Schnaar RL, Seeberger PH, editors. Essentials of Glycobiology [Internet]. 3rd edition. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press; 2015-2017. Chapter 51.


Aeromonas salmonicida Growth in Response to Atlantic Salmon Mucins Differs between Epithelial Sites, Is Governed by Sialylated and N-Acetylhexosamine-Containing O-Glycans, and Is Affected by Ca2.

Padra JT, Sundh H, Sundell K, Venkatakrishnan V, Jin C, Samuelsson T, Karlsson NG, Lindén SK.

Infect Immun. 2017 Jul 19;85(8). pii: e00189-17. doi: 10.1128/IAI.00189-17. Print 2017 Aug.


Structural Diversity of Human Gastric Mucin Glycans.

Jin C, Kenny DT, Skoog EC, Padra M, Adamczyk B, Vitizeva V, Thorell A, Venkatakrishnan V, Lindén SK, Karlsson NG.

Mol Cell Proteomics. 2017 May;16(5):743-758. doi: 10.1074/mcp.M116.067983.


Influence of Glycosylation on Interfacial Properties of Recombinant Mucins: Adsorption, Surface Forces, and Friction.

An J, Jin C, Dėdinaitė A, Holgersson J, Karlsson NG, Claesson PM.

Langmuir. 2017 May 9;33(18):4386-4395. doi: 10.1021/acs.langmuir.7b00030. Epub 2017 Apr 26.


Cartilage oligomeric matrix protein forms protein complexes with synovial lubricin via non-covalent and covalent interactions.

Flowers SA, Kalamajski S, Ali L, Björkman LI, Raj JR, Aspberg A, Karlsson NG, Jin C.

Osteoarthritis Cartilage. 2017 Sep;25(9):1496-1504. doi: 10.1016/j.joca.2017.03.016. Epub 2017 Apr 1.


Structural diversity of human gastric mucin glycans.

Jin C, Kenny DT, Skoog EC, Padra M, Adamczyk B, Vitizeva V, Thorell A, Venkatakrishnan V, Lindén SK, Karlsson NG.

Mol Cell Proteomics. 2017 Mar 13. pii: mcp.M117.067983. doi: 10.1074/mcp.M117.067983. [Epub ahead of print]


Molecular synergy in biolubrication: The role of cartilage oligomeric matrix protein (COMP) in surface-structuring of lubricin.

Raj A, Wang M, Liu C, Ali L, Karlsson NG, Claesson PM, Dėdinaitė A.

J Colloid Interface Sci. 2017 Jun 1;495:200-206. doi: 10.1016/j.jcis.2017.02.007. Epub 2017 Feb 8.


The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data.

Liu Y, McBride R, Stoll M, Palma AS, Silva L, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Novotny MV, Packer NH, Ranzinger R, Rapp E, Rudd PM, Struwe WB, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C, Paulson JC, Feizi T, Smith DF.

Glycobiology. 2016 Nov 22. [Epub ahead of print]


Databases and Associated Tools for Glycomics and Glycoproteomics.

Lisacek F, Mariethoz J, Alocci D, Rudd PM, Abrahams JL, Campbell MP, Packer NH, Ståhle J, Widmalm G, Mullen E, Adamczyk B, Rojas-Macias MA, Jin C, Karlsson NG.

Methods Mol Biol. 2017;1503:235-264.


High-Throughput Analysis of the Plasma N-Glycome by UHPLC.

Adamczyk B, Stöckmann H, O'Flaherty R, Karlsson NG, Rudd PM.

Methods Mol Biol. 2017;1503:97-108.


The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets.

Struwe WB, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Ten Feizi, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Liu Y, McBride R, Novotny MV, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C.

Glycobiology. 2016 Sep;26(9):907-910. Epub 2016 Sep 21.


Recombinant Mucin-Type Fusion Proteins with a Galα1,3Gal Substitution as Clostridium difficile Toxin A Inhibitors.

Cherian RM, Jin C, Liu J, Karlsson NG, Holgersson J.

Infect Immun. 2016 Sep 19;84(10):2842-52. doi: 10.1128/IAI.00341-16. Print 2016 Oct.


Pregnancy-Associated Changes of IgG and Serum N-Glycosylation in Camel (Camelus dromedarius).

Adamczyk B, Albrecht S, Stöckmann H, Ghoneim IM, Al-Eknah M, Al-Busadah KA, Karlsson NG, Carrington SD, Rudd PM.

J Proteome Res. 2016 Sep 2;15(9):3255-65. doi: 10.1021/acs.jproteome.6b00439. Epub 2016 Aug 3.


EndoSd: an IgG glycan hydrolyzing enzyme in Streptococcus dysgalactiae subspecies dysgalactiae.

Shadnezhad A, Naegeli A, Sjögren J, Adamczyk B, Leo F, Allhorn M, Karlsson NG, Jensen A, Collin M.

Future Microbiol. 2016 Jun;11:721-36. doi: 10.2217/fmb.16.14. Epub 2016 May 20.


Glycomic and sialoproteomic data of gastric carcinoma cells overexpressing ST3GAL4.

Mereiter S, Magalhães A, Adamczyk B, Jin C, Almeida A, Drici L, Ibáñez-Vea M, Larsen MR, Kolarich D, Karlsson NG, Reis CA.

Data Brief. 2016 Mar 14;7:814-33. doi: 10.1016/j.dib.2016.03.022. eCollection 2016 Jun.


Glycomic analysis of gastric carcinoma cells discloses glycans as modulators of RON receptor tyrosine kinase activation in cancer.

Mereiter S, Magalhães A, Adamczyk B, Jin C, Almeida A, Drici L, Ibáñez-Vea M, Gomes C, Ferreira JA, Afonso LP, Santos LL, Larsen MR, Kolarich D, Karlsson NG, Reis CA.

Biochim Biophys Acta. 2016 Aug;1860(8):1795-808. doi: 10.1016/j.bbagen.2015.12.016. Epub 2015 Dec 22.


Reduced Mucin-7 (Muc7) Sialylation and Altered Saliva Rheology in Sjögren's Syndrome Associated Oral Dryness.

Chaudhury NM, Proctor GB, Karlsson NG, Carpenter GH, Flowers SA.

Mol Cell Proteomics. 2016 Mar;15(3):1048-59. doi: 10.1074/mcp.M115.052993. Epub 2015 Dec 2.


SugarBindDB, a resource of glycan-mediated host-pathogen interactions.

Mariethoz J, Khatib K, Alocci D, Campbell MP, Karlsson NG, Packer NH, Mullen EH, Lisacek F.

Nucleic Acids Res. 2016 Jan 4;44(D1):D1243-50. doi: 10.1093/nar/gkv1247. Epub 2015 Nov 17.


Comparison of analytical methods for profiling N- and O-linked glycans from cultured cell lines : HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study.

Ito H, Kaji H, Togayachi A, Azadi P, Ishihara M, Geyer R, Galuska C, Geyer H, Kakehi K, Kinoshita M, Karlsson NG, Jin C, Kato K, Yagi H, Kondo S, Kawasaki N, Hashii N, Kolarich D, Stavenhagen K, Packer NH, Thaysen-Andersen M, Nakano M, Taniguchi N, Kurimoto A, Wada Y, Tajiri M, Yang P, Cao W, Li H, Rudd PM, Narimatsu H.

Glycoconj J. 2016 Jun;33(3):405-415. doi: 10.1007/s10719-015-9625-3. Epub 2015 Oct 28.


Characterisation of lubricin in synovial fluid from horses with osteoarthritis.

Svala E, Jin C, Rüetschi U, Ekman S, Lindahl A, Karlsson NG, Skiöldebrand E.

Equine Vet J. 2017 Jan;49(1):116-123. doi: 10.1111/evj.12521. Epub 2015 Dec 16.


A Panel of Recombinant Mucins Carrying a Repertoire of Sialylated O-Glycans Based on Different Core Chains for Studies of Glycan Binding Proteins.

Cherian RM, Jin C, Liu J, Karlsson NG, Holgersson J.

Biomolecules. 2015 Aug 12;5(3):1810-31. doi: 10.3390/biom5031810.


Structural Aspects of N-Glycosylations and the C-terminal Region in Human Glypican-1.

Awad W, Adamczyk B, Örnros J, Karlsson NG, Mani K, Logan DT.

J Biol Chem. 2015 Sep 18;290(38):22991-3008. doi: 10.1074/jbc.M115.660878. Epub 2015 Jul 22.


The O-Linked Glycome and Blood Group Antigens ABO on Mucin-Type Glycoproteins in Mucinous and Serous Epithelial Ovarian Tumors.

Vitiazeva V, Kattla JJ, Flowers SA, Lindén SK, Premaratne P, Weijdegård B, Sundfeldt K, Karlsson NG.

PLoS One. 2015 Jun 15;10(6):e0130197. doi: 10.1371/journal.pone.0130197. eCollection 2015.


Atlantic Salmon Carries a Range of Novel O-Glycan Structures Differentially Localized on Skin and Intestinal Mucins.

Jin C, Padra JT, Sundell K, Sundh H, Karlsson NG, Lindén SK.

J Proteome Res. 2015 Aug 7;14(8):3239-51. doi: 10.1021/acs.jproteome.5b00232. Epub 2015 Jun 26.


Salivary mucin MUC7 oligosaccharides in patients with recurrent aphthous stomatitis.

Zad M, Flowers SA, Bankvall M, Jontell M, Karlsson NG.

Clin Oral Investig. 2015 Nov;19(8):2147-52. doi: 10.1007/s00784-015-1495-3. Epub 2015 Jun 9.


Targeted release and fractionation reveal glucuronylated and sulphated N- and O-glycans in larvae of dipteran insects.

Kurz S, Aoki K, Jin C, Karlsson NG, Tiemeyer M, Wilson IB, Paschinger K.

J Proteomics. 2015 Aug 3;126:172-88. doi: 10.1016/j.jprot.2015.05.030. Epub 2015 Jun 3.


Bisecting Galactose as a Feature of N-Glycans of Wild-type and Mutant Caenorhabditis elegans.

Yan S, Brecker L, Jin C, Titz A, Dragosits M, Karlsson NG, Jantsch V, Wilson IB, Paschinger K.

Mol Cell Proteomics. 2015 Aug;14(8):2111-25. doi: 10.1074/mcp.M115.049817. Epub 2015 May 22.

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