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Items: 28

1.

Direct Cell Mass Measurements Expand the Role of Small Microorganisms in Nature.

Khachikyan A, Milucka J, Littmann S, Ahmerkamp S, Meador T, Könneke M, Burg T, Kuypers MMM.

Appl Environ Microbiol. 2019 May 10. pii: AEM.00493-19. doi: 10.1128/AEM.00493-19. [Epub ahead of print]

PMID:
31076432
2.

Microbial dormancy in the marine subsurface: Global endospore abundance and response to burial.

Wörmer L, Hoshino T, Bowles MW, Viehweger B, Adhikari RR, Xiao N, Uramoto GI, Könneke M, Lazar CS, Morono Y, Inagaki F, Hinrichs KU.

Sci Adv. 2019 Feb 20;5(2):eaav1024. doi: 10.1126/sciadv.aav1024. eCollection 2019 Feb.

3.

Cyanate and urea are substrates for nitrification by Thaumarchaeota in the marine environment.

Kitzinger K, Padilla CC, Marchant HK, Hach PF, Herbold CW, Kidane AT, Könneke M, Littmann S, Mooshammer M, Niggemann J, Petrov S, Richter A, Stewart FJ, Wagner M, Kuypers MMM, Bristow LA.

Nat Microbiol. 2019 Feb;4(2):234-243. doi: 10.1038/s41564-018-0316-2. Epub 2018 Dec 10.

PMID:
30531977
4.

Hydroxylamine released by nitrifying microorganisms is a precursor for HONO emission from drying soils.

Ermel M, Behrendt T, Oswald R, Derstroff B, Wu D, Hohlmann S, Stönner C, Pommerening-Röser A, Könneke M, Williams J, Meixner FX, Andreae MO, Trebs I, Sörgel M.

Sci Rep. 2018 Jan 30;8(1):1877. doi: 10.1038/s41598-018-20170-1.

5.

Nitrosopumilus maritimus gen. nov., sp. nov., Nitrosopumilus cobalaminigenes sp. nov., Nitrosopumilus oxyclinae sp. nov., and Nitrosopumilus ureiphilus sp. nov., four marine ammonia-oxidizing archaea of the phylum Thaumarchaeota.

Qin W, Heal KR, Ramdasi R, Kobelt JN, Martens-Habbena W, Bertagnolli AD, Amin SA, Walker CB, Urakawa H, Könneke M, Devol AH, Moffett JW, Armbrust EV, Jensen GJ, Ingalls AE, Stahl DA.

Int J Syst Evol Microbiol. 2017 Dec;67(12):5067-5079. doi: 10.1099/ijsem.0.002416. Epub 2017 Oct 16.

PMID:
29034851
6.

Chemotaxonomic characterisation of the thaumarchaeal lipidome.

Elling FJ, Könneke M, Nicol GW, Stieglmeier M, Bayer B, Spieck E, de la Torre JR, Becker KW, Thomm M, Prosser JI, Herndl GJ, Schleper C, Hinrichs KU.

Environ Microbiol. 2017 Jul;19(7):2681-2700. doi: 10.1111/1462-2920.13759. Epub 2017 May 19.

PMID:
28419726
7.

Influence of ammonia oxidation rate on thaumarchaeal lipid composition and the TEX86 temperature proxy.

Hurley SJ, Elling FJ, Könneke M, Buchwald C, Wankel SD, Santoro AE, Lipp JS, Hinrichs KU, Pearson A.

Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7762-7. doi: 10.1073/pnas.1518534113. Epub 2016 Jun 28.

8.

Stratification of archaeal membrane lipids in the ocean and implications for adaptation and chemotaxonomy of planktonic archaea.

Zhu C, Wakeham SG, Elling FJ, Basse A, Mollenhauer G, Versteegh GJ, Könneke M, Hinrichs KU.

Environ Microbiol. 2016 Dec;18(12):4324-4336. doi: 10.1111/1462-2920.13289. Epub 2016 Apr 28.

PMID:
26950522
9.

Strangers in the archaeal world: osmostress-responsive biosynthesis of ectoine and hydroxyectoine by the marine thaumarchaeon Nitrosopumilus maritimus.

Widderich N, Czech L, Elling FJ, Könneke M, Stöveken N, Pittelkow M, Riclea R, Dickschat JS, Heider J, Bremer E.

Environ Microbiol. 2016 Apr;18(4):1227-48. doi: 10.1111/1462-2920.13156. Epub 2016 Jan 18.

PMID:
26636559
10.

Respiratory quinones in Archaea: phylogenetic distribution and application as biomarkers in the marine environment.

Elling FJ, Becker KW, Könneke M, Schröder JM, Kellermann MY, Thomm M, Hinrichs KU.

Environ Microbiol. 2016 Feb;18(2):692-707. doi: 10.1111/1462-2920.13086. Epub 2015 Dec 22.

PMID:
26472620
11.

Methane cycling. Nonequilibrium clumped isotope signals in microbial methane.

Wang DT, Gruen DS, Lollar BS, Hinrichs KU, Stewart LC, Holden JF, Hristov AN, Pohlman JW, Morrill PL, Könneke M, Delwiche KB, Reeves EP, Sutcliffe CN, Ritter DJ, Seewald JS, McIntosh JC, Hemond HF, Kubo MD, Cardace D, Hoehler TM, Ono S.

Science. 2015 Apr 24;348(6233):428-31. doi: 10.1126/science.aaa4326. Epub 2015 Mar 5.

12.

Malonic semialdehyde reductase from the archaeon Nitrosopumilus maritimus is involved in the autotrophic 3-hydroxypropionate/4-hydroxybutyrate cycle.

Otte J, Mall A, Schubert DM, Könneke M, Berg IA.

Appl Environ Microbiol. 2015 Mar;81(5):1700-7. doi: 10.1128/AEM.03390-14. Epub 2014 Dec 29.

13.

Ammonia-oxidizing archaea use the most energy-efficient aerobic pathway for CO2 fixation.

Könneke M, Schubert DM, Brown PC, Hügler M, Standfest S, Schwander T, Schada von Borzyskowski L, Erb TJ, Stahl DA, Berg IA.

Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):8239-44. doi: 10.1073/pnas.1402028111. Epub 2014 May 19.

14.

Desulfofrigus sp. prevails in sulfate-reducing dilution cultures from sediments of the Benguela upwelling area.

Kraft B, Engelen B, Goldhammer T, Lin YS, Cypionka H, Könneke M.

FEMS Microbiol Ecol. 2013 Apr;84(1):86-97. doi: 10.1111/1574-6941.12039. Epub 2012 Dec 4.

15.

Mimicking the oxygen minimum zones: stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system.

Yan J, Haaijer SC, Op den Camp HJ, van Niftrik L, Stahl DA, Könneke M, Rush D, Sinninghe Damsté JS, Hu YY, Jetten MS.

Environ Microbiol. 2012 Dec;14(12):3146-58. doi: 10.1111/j.1462-2920.2012.02894.x. Epub 2012 Oct 12.

16.

Desulfoconvexum algidum gen. nov., sp. nov., a psychrophilic sulfate-reducing bacterium isolated from a permanently cold marine sediment.

Könneke M, Kuever J, Galushko A, Jørgensen BB.

Int J Syst Evol Microbiol. 2013 Mar;63(Pt 3):959-64. doi: 10.1099/ijs.0.043703-0. Epub 2012 Jun 1.

PMID:
22659505
17.

Isolation of sulfate-reducing bacteria from sediments above the deep-subseafloor aquifer.

Fichtel K, Mathes F, Könneke M, Cypionka H, Engelen B.

Front Microbiol. 2012 Feb 20;3:65. doi: 10.3389/fmicb.2012.00065. eCollection 2012.

18.

Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil.

Tourna M, Stieglmeier M, Spang A, Könneke M, Schintlmeister A, Urich T, Engel M, Schloter M, Wagner M, Richter A, Schleper C.

Proc Natl Acad Sci U S A. 2011 May 17;108(20):8420-5. doi: 10.1073/pnas.1013488108. Epub 2011 Apr 27.

19.

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea.

Walker CB, de la Torre JR, Klotz MG, Urakawa H, Pinel N, Arp DJ, Brochier-Armanet C, Chain PS, Chan PP, Gollabgir A, Hemp J, Hügler M, Karr EA, Könneke M, Shin M, Lawton TJ, Lowe T, Martens-Habbena W, Sayavedra-Soto LA, Lang D, Sievert SM, Rosenzweig AC, Manning G, Stahl DA.

Proc Natl Acad Sci U S A. 2010 May 11;107(19):8818-23. doi: 10.1073/pnas.0913533107. Epub 2010 Apr 26.

20.

Desulfopila inferna sp. nov., a sulfate-reducing bacterium isolated from the subsurface of a tidal sand-flat.

Gittel A, Seidel M, Kuever J, Galushko AS, Cypionka H, Könneke M.

Int J Syst Evol Microbiol. 2010 Jul;60(Pt 7):1626-30. doi: 10.1099/ijs.0.015644-0. Epub 2009 Aug 28.

PMID:
19717583
21.

Identity and abundance of active sulfate-reducing bacteria in deep tidal flat sediments determined by directed cultivation and CARD-FISH analysis.

Gittel A, Mussmann M, Sass H, Cypionka H, Könneke M.

Environ Microbiol. 2008 Oct;10(10):2645-58. doi: 10.1111/j.1462-2920.2008.01686.x. Epub 2008 Jul 8.

PMID:
18627412
22.

Intact membrane lipids of "Candidatus Nitrosopumilus maritimus," a cultivated representative of the cosmopolitan mesophilic group I Crenarchaeota.

Schouten S, Hopmans EC, Baas M, Boumann H, Standfest S, Könneke M, Stahl DA, Sinninghe Damsté JS.

Appl Environ Microbiol. 2008 Apr;74(8):2433-40. doi: 10.1128/AEM.01709-07. Epub 2008 Feb 22.

23.

Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol.

de la Torre JR, Walker CB, Ingalls AE, Könneke M, Stahl DA.

Environ Microbiol. 2008 Mar;10(3):810-8. doi: 10.1111/j.1462-2920.2007.01506.x. Epub 2008 Jan 19.

PMID:
18205821
24.

Isolation of an autotrophic ammonia-oxidizing marine archaeon.

Könneke M, Bernhard AE, de la Torre JR, Walker CB, Waterbury JB, Stahl DA.

Nature. 2005 Sep 22;437(7058):543-6.

PMID:
16177789
25.

DNA microarrays as salivary diagnostic tools for characterizing the oral cavity's microbial community.

Smoot LM, Smoot JC, Smidt H, Noble PA, Könneke M, McMurry ZA, Stahl DA.

Adv Dent Res. 2005 Jun;18(1):6-11. No abstract available.

PMID:
15998937
26.

Effect of growth temperature on cellular fatty acids in sulphate-reducing bacteria.

Könneke M, Widdel F.

Environ Microbiol. 2003 Nov;5(11):1064-70.

PMID:
14641586
27.

Physiological response to temperature changes of the marine, sulfate-reducing bacterium Desulfobacterium autotrophicum.

Rabus R, Brüchert V, Amann J, Könneke M.

FEMS Microbiol Ecol. 2002 Dec 1;42(3):409-17. doi: 10.1111/j.1574-6941.2002.tb01030.x.

28.

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