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Top-Down and Bottom-Up Proteomics of Circulating S100A8/S100A9 in Plasma of Septic Shock Patients.

Dubois C, Payen D, Simon S, Junot C, Fenaille F, Morel N, Becher F.

J Proteome Res. 2020 Feb 7;19(2):914-925. doi: 10.1021/acs.jproteome.9b00690. Epub 2020 Jan 22.


Blood metabolomics uncovers inflammation-associated mitochondrial dysfunction as a potential mechanism underlying ACLF.

Moreau R, Clària J, Aguilar F, Fenaille F, Lozano JJ, Junot C, Colsch B, Caraceni P, Trebicka J, Pavesi M, Alessandria C, Nevens F, Saliba F, Welzel TM, Albillos A, Gustot T, Fernández J, Moreno C, Baldassarre M, Zaccherini G, Piano S, Montagnese S, Vargas V, Genescà J, Solà E, Bernal W, Butin N, Hautbergue T, Cholet S, Castelli F, Jansen C, Steib C, Campion D, Mookerjee R, Rodríguez-Gandía M, Soriano G, Durand F, Benten D, Bañares R, Stauber RE, Gronbaek H, Coenraad MJ, Ginès P, Gerbes A, Jalan R, Bernardi M, Arroyo V, Angeli P; CANONIC Study Investigators of the EASL Clif Consortium; Grifols Chair; European Foundation for the Study of Chronic Liver Failure (EF Clif).

J Hepatol. 2019 Nov 25. pii: S0168-8278(19)30696-8. doi: 10.1016/j.jhep.2019.11.009. [Epub ahead of print]


High plasma level of S100A8/S100A9 and S100A12 at admission indicates a higher risk of death in septic shock patients.

Dubois C, Marcé D, Faivre V, Lukaszewicz AC, Junot C, Fenaille F, Simon S, Becher F, Morel N, Payen D.

Sci Rep. 2019 Oct 30;9(1):15660. doi: 10.1038/s41598-019-52184-8.


Simultaneous quantification of tau and α-synuclein in cerebrospinal fluid by high-resolution mass spectrometry for differentiation of Lewy Body Dementia from Alzheimer's Disease and controls.

Viodé A, Epelbaum S, Benyounes I, Verny M, Dubois B, Junot C, Fenaille F, Lamari F, Becher F.

Analyst. 2019 Oct 22;144(21):6342-6351. doi: 10.1039/c9an00751b.


Quantification of low abundance Yersinia pestis markers in dried blood spots by immuno-capture and quantitative high-resolution targeted mass spectrometry.

Rifflet A, Filali S, Chenau J, Simon S, Fenaille F, Junot C, Carniel E, Becher F.

Eur J Mass Spectrom (Chichester). 2019 Jun;25(3):268-277. doi: 10.1177/1469066718795978.


Tracking main environmental factors masking a minor steroidal doping effect using metabolomic analysis of horse urine by liquid chromatography-high-resolution mass spectrometry.

Stojiljkovic N, Leroux F, Bubanj S, Popot MA, Paris A, Tabet JC, Junot C.

Eur J Mass Spectrom (Chichester). 2019 Jun;25(3):339-353. doi: 10.1177/1469066719839034.


Proposal for a chemically consistent way to annotate ions arising from the analysis of reference compounds under ESI conditions: A prerequisite to proper mass spectral database constitution in metabolomics.

Damont A, Olivier MF, Warnet A, Lyan B, Pujos-Guillot E, Jamin EL, Debrauwer L, Bernillon S, Junot C, Tabet JC, Fenaille F.

J Mass Spectrom. 2019 Jun;54(6):567-582. doi: 10.1002/jms.4372.


Experimental evidence that electrospray-produced sodiated lysophosphatidyl ester structures exist essentially as protonated salts.

Colsch B, Damont A, Junot C, Fenaille F, Tabet JC.

Eur J Mass Spectrom (Chichester). 2019 Jun;25(3):333-338. doi: 10.1177/1469066719838924. Epub 2019 Mar 25.


Orchestration of Tryptophan-Kynurenine Pathway, Acute Decompensation, and Acute-on-Chronic Liver Failure in Cirrhosis.

Clària J, Moreau R, Fenaille F, Amorós A, Junot C, Gronbaek H, Coenraad MJ, Pruvost A, Ghettas A, Chu-Van E, López-Vicario C, Oettl K, Caraceni P, Alessandria C, Trebicka J, Pavesi M, Deulofeu C, Albillos A, Gustot T, Welzel TM, Fernández J, Stauber RE, Saliba F, Butin N, Colsch B, Moreno C, Durand F, Nevens F, Bañares R, Benten D, Ginès P, Gerbes A, Jalan R, Angeli P, Bernardi M, Arroyo V; CANONIC Study Investigators of the EASL Clif Consortium, Grifols Chair and the European Foundation for the Study of Chronic Liver Failure (EF Clif).

Hepatology. 2019 Apr;69(4):1686-1701. doi: 10.1002/hep.30363. Epub 2019 Mar 19.


Immune components of early breastmilk: Association with maternal factors and with reported food allergy in childhood.

Berdi M, de Lauzon-Guillain B, Forhan A, Castelli FA, Fenaille F, Charles MA, Heude B, Junot C, Adel-Patient K; EDEN Mother-Child Cohort Study Group.

Pediatr Allergy Immunol. 2019 Feb;30(1):107-116. doi: 10.1111/pai.12998. Epub 2019 Jan 9.


Metabolomic Investigation of Staphylococcus aureus Antibiotic Susceptibility by Liquid Chromatography Coupled to High-Resolution Mass Spectrometry.

Aros-Calt S, Castelli FA, Lamourette P, Gervasi G, Junot C, Muller BH, Fenaille F.

Methods Mol Biol. 2019;1871:279-293. doi: 10.1007/978-1-4939-8814-3_18.


Deep analysis of immune response and metabolic signature in children with food protein induced enterocolitis to cow's milk.

Adel-Patient K, Lezmi G, Castelli FA, Blanc S, Bernard H, Soulaines P, Dumond P, Ah-Leung S, Lageix F, de Boissieu D, Cortes-Perez N, Hazebrouck S, Fenaille F, Junot C, Dupont C.

Clin Transl Allergy. 2018 Sep 28;8:38. doi: 10.1186/s13601-018-0224-9. eCollection 2018.


New Antibody-Free Mass Spectrometry-Based Quantification Reveals That C9ORF72 Long Protein Isoform Is Reduced in the Frontal Cortex of Hexanucleotide-Repeat Expansion Carriers.

Viodé A, Fournier C, Camuzat A, Fenaille F; NeuroCEB Brain Bank, Latouche M, Elahi F, Le Ber I, Junot C, Lamari F, Anquetil V, Becher F.

Front Neurosci. 2018 Aug 28;12:589. doi: 10.3389/fnins.2018.00589. eCollection 2018.


MetaboRank: network-based recommendation system to interpret and enrich metabolomics results.

Frainay C, Aros S, Chazalviel M, Garcia T, Vinson F, Weiss N, Colsch B, Sedel F, Thabut D, Junot C, Jourdan F.

Bioinformatics. 2019 Jan 15;35(2):274-283. doi: 10.1093/bioinformatics/bty577.


Baseline urine metabolic phenotype in patients with severe alcoholic hepatitis and its association with outcome.

Maras JS, Das S, Sharma S, Shasthry SM, Colsch B, Junot C, Moreau R, Sarin SK.

Hepatol Commun. 2018 Apr 16;2(6):628-643. doi: 10.1002/hep4.1176. eCollection 2018 Jun.


Evaluation of the High-Field Orbitrap Fusion for Compound Annotation in Metabolomics.

Barbier Saint Hilaire P, Hohenester UM, Colsch B, Tabet JC, Junot C, Fenaille F.

Anal Chem. 2018 Mar 6;90(5):3030-3035. doi: 10.1021/acs.analchem.7b05372. Epub 2018 Feb 19.


Targeted versus untargeted omics - the CAFSA story.

Del Mar Amador M, Colsch B, Lamari F, Jardel C, Ichou F, Rastetter A, Sedel F, Jourdan F, Frainay C, Wevers RA, Roze E, Depienne C, Junot C, Mochel F.

J Inherit Metab Dis. 2018 May;41(3):447-456. doi: 10.1007/s10545-017-0134-3. Epub 2018 Feb 8.


A multidrug ABC transporter with a taste for GTP.

Orelle C, Durmort C, Mathieu K, Duchêne B, Aros S, Fenaille F, André F, Junot C, Vernet T, Jault JM.

Sci Rep. 2018 Feb 2;8(1):2309. doi: 10.1038/s41598-018-20558-z.


Bone marrow sites differently imprint dormancy and chemoresistance to T-cell acute lymphoblastic leukemia.

Cahu X, Calvo J, Poglio S, Prade N, Colsch B, Arcangeli ML, Leblanc T, Petit A, Baleydier F, Baruchel A, Landman-Parker J, Junot C, Larghero J, Ballerini P, Delabesse E, Uzan B, Pflumio F.

Blood Adv. 2017 Sep 8;1(20):1760-1772. doi: 10.1182/bloodadvances.2017004960. eCollection 2017 Sep 12.


Identification of molecules from non-targeted analysis.

Junot C, Witting M.

J Chromatogr B Analyt Technol Biomed Life Sci. 2017 Dec 15;1071:1-2. doi: 10.1016/j.jchromb.2017.11.030. No abstract available.


A capillary zone electrophoresis method for detection of Apolipoprotein C-III glycoforms and other related artifactually modified species.

Ruel C, Morani M, Bruneel A, Junot C, Taverna M, Fenaille F, Tran NT.

J Chromatogr A. 2018 Jan 12;1532:238-245. doi: 10.1016/j.chroma.2017.12.002. Epub 2017 Dec 5.


Mechanisms governing the fragmentation of glycerophospholipids containing choline and ethanolamine polar head groups.

Colsch B, Fenaille F, Warnet A, Junot C, Tabet JC.

Eur J Mass Spectrom (Chichester). 2017 Dec;23(6):427-444. doi: 10.1177/1469066717731668. Epub 2017 Sep 24.


Data acquisition workflows in liquid chromatography coupled to high resolution mass spectrometry-based metabolomics: Where do we stand?

Fenaille F, Barbier Saint-Hilaire P, Rousseau K, Junot C.

J Chromatogr A. 2017 Dec 1;1526:1-12. doi: 10.1016/j.chroma.2017.10.043. Epub 2017 Oct 18. Review.


proFIA: a data preprocessing workflow for flow injection analysis coupled to high-resolution mass spectrometry.

Delabrière A, Hohenester UM, Colsch B, Junot C, Fenaille F, Thévenot EA.

Bioinformatics. 2017 Dec 1;33(23):3767-3775. doi: 10.1093/bioinformatics/btx458.


Rapid Detection of Abrin Toxin and Its Isoforms in Complex Matrices by Immuno-Extraction and Quantitative High Resolution Targeted Mass Spectrometry.

Hansbauer EM, Worbs S, Volland H, Simon S, Junot C, Fenaille F, Dorner BG, Becher F.

Anal Chem. 2017 Nov 7;89(21):11719-11727. doi: 10.1021/acs.analchem.7b03189. Epub 2017 Oct 20.


Pre-therapy liver transcriptome landscape in Indian and French patients with severe alcoholic hepatitis and steroid responsiveness.

Sharma S, Maras JS, Das S, Hussain S, Mishra AK, Shasthry SM, Sharma CB, Weiss E, Elkrief L, Rautou PE, Gilgenkrantz H, Lotersztajn S, Paradis V, de la Grange P, Junot C, Moreau R, Sarin SK.

Sci Rep. 2017 Jul 28;7(1):6816. doi: 10.1038/s41598-017-07161-4.


Reply to: "Serum metabolic signatures in patients with overt hepatic encephalopathy": Metabolic signature for severe cirrhosis with inflammation or hepatic encephalopathy: Do we really face two different entities?

Weiss N, Colsch B, Fenaille F, Junot C, Thabut D.

J Hepatol. 2017 Nov;67(5):1115-1116. doi: 10.1016/j.jhep.2017.06.032. Epub 2017 Jul 6. No abstract available.


A simple and rapid LC-MS/MS method for therapeutic drug monitoring of cetuximab: a GPCO-UNICANCER proof of concept study in head-and-neck cancer patients.

Becher F, Ciccolini J, Imbs DC, Marin C, Fournel C, Dupuis C, Fakhry N, Pourroy B, Ghettas A, Pruvost A, Junot C, Duffaud F, Lacarelle B, Salas S.

Sci Rep. 2017 Jun 2;7(1):2714. doi: 10.1038/s41598-017-02821-x.


Detection of Yersinia pestis in Complex Matrices by Intact Cell Immunocapture and Targeted Mass Spectrometry.

Chenau J, Fenaille F, Simon S, Filali S, Volland H, Junot C, Carniel E, Becher F.

Methods Mol Biol. 2017;1600:69-83. doi: 10.1007/978-1-4939-6958-6_7.


Comparative analysis of native and permethylated human milk oligosaccharides by liquid chromatography coupled to high resolution mass spectrometry.

Oursel S, Cholet S, Junot C, Fenaille F.

J Chromatogr B Analyt Technol Biomed Life Sci. 2017 Dec 15;1071:49-57. doi: 10.1016/j.jchromb.2017.03.028. Epub 2017 Mar 27.


Quality Matters: 2016 Annual Conference of the National Infrastructures for Biobanking.

Doucet M, Becker KF, Björkman J, Bonnet J, Clément B, Daidone MG, Duyckaerts C, Erb G, Haslacher H, Hofman P, Huppertz B, Junot C, Lundeberg J, Metspalu A, Lavitrano M, Litton JE, Moore HM, Morente M, Naimi BY, Oelmueller U, Ollier B, Parodi B, Ruan L, Stanta G, Turano P, Vaught J, Watson P, Wichmann HE, Yuille M, Zaomi M, Zatloukal K, Dagher G.

Biopreserv Biobank. 2017 Jun;15(3):270-276. doi: 10.1089/bio.2016.0053. Epub 2016 Dec 19. No abstract available.


Mechanistic study of competitive releases of H2O, NH3 and CO2 from deprotonated aspartic and glutamic acids: Role of conformation.

Barbier Saint Hilaire P, Warnet A, Gimbert Y, Hohenester UM, Giorgi G, Olivier MF, Fenaille F, Colsch B, Junot C, Tabet JC.

J Chromatogr B Analyt Technol Biomed Life Sci. 2017 Mar 15;1047:64-74. doi: 10.1016/j.jchromb.2016.08.036. Epub 2016 Aug 24.


Cerebrospinal fluid metabolomics highlights dysregulation of energy metabolism in overt hepatic encephalopathy.

Weiss N, Barbier Saint Hilaire P, Colsch B, Isnard F, Attala S, Schaefer A, Amador MD, Rudler M, Lamari F, Sedel F, Thabut D, Junot C.

J Hepatol. 2016 Dec;65(6):1120-1130. doi: 10.1016/j.jhep.2016.07.046. Epub 2016 Aug 9.


Development and validation of a multiresidue method for the analysis of more than 500 pesticides and drugs in water based on on-line and liquid chromatography coupled to high resolution mass spectrometry.

Cotton J, Leroux F, Broudin S, Poirel M, Corman B, Junot C, Ducruix C.

Water Res. 2016 Nov 1;104:20-27. doi: 10.1016/j.watres.2016.07.075. Epub 2016 Aug 2.


biosigner: A New Method for the Discovery of Significant Molecular Signatures from Omics Data.

Rinaudo P, Boudah S, Junot C, Thévenot EA.

Front Mol Biosci. 2016 Jun 21;3:26. doi: 10.3389/fmolb.2016.00026. eCollection 2016.


Bio-engineered and native red blood cells from cord blood exhibit the same metabolomic profile.

Darghouth D, Giarratana MC, Oliveira L, Jolly S, Marie T, Boudah S, Mario N, Junot C, Douay L, Romeo PH.

Haematologica. 2016 Jun;101(6):e220-2. doi: 10.3324/haematol.2015.141465. Epub 2016 Mar 11. No abstract available.


Isocitrate dehydrogenase 1 mutations prime the all-trans retinoic acid myeloid differentiation pathway in acute myeloid leukemia.

Boutzen H, Saland E, Larrue C, de Toni F, Gales L, Castelli FA, Cathebas M, Zaghdoudi S, Stuani L, Kaoma T, Riscal R, Yang G, Hirsch P, David M, De Mas-Mansat V, Delabesse E, Vallar L, Delhommeau F, Jouanin I, Ouerfelli O, Le Cam L, Linares LK, Junot C, Portais JC, Vergez F, Récher C, Sarry JE.

J Exp Med. 2016 Apr 4;213(4):483-97. doi: 10.1084/jem.20150736. Epub 2016 Mar 7.


Differential Mass Spectrometry Profiles of Tau Protein in the Cerebrospinal Fluid of Patients with Alzheimer's Disease, Progressive Supranuclear Palsy, and Dementia with Lewy Bodies.

Barthélemy NR, Gabelle A, Hirtz C, Fenaille F, Sergeant N, Schraen-Maschke S, Vialaret J, Buée L, Junot C, Becher F, Lehmann S.

J Alzheimers Dis. 2016;51(4):1033-43. doi: 10.3233/JAD-150962.


The Time Is Right to Focus on Model Organism Metabolomes.

Edison AS, Hall RD, Junot C, Karp PD, Kurland IJ, Mistrik R, Reed LK, Saito K, Salek RM, Steinbeck C, Sumner LW, Viant MR.

Metabolites. 2016 Feb 15;6(1). pii: E8. doi: 10.3390/metabo6010008.


Hepatic vs. drug-induced encephalopathy in cirrhotic patients?

Weiss N, Junot C, Rudler M, Thabut D.

Liver Int. 2016 Aug;36(8):1233-4. doi: 10.1111/liv.13061. Epub 2016 Jan 30. No abstract available.


Tau Protein Quantification in Human Cerebrospinal Fluid by Targeted Mass Spectrometry at High Sequence Coverage Provides Insights into Its Primary Structure Heterogeneity.

Barthélemy NR, Fenaille F, Hirtz C, Sergeant N, Schraen-Maschke S, Vialaret J, Buée L, Gabelle A, Junot C, Lehmann S, Becher F.

J Proteome Res. 2016 Feb 5;15(2):667-76. doi: 10.1021/acs.jproteome.5b01001. Epub 2016 Jan 19.


Oxidative-stress detoxification and signalling in cyanobacteria: the crucial glutathione synthesis pathway supports the production of ergothioneine and ophthalmate.

Narainsamy K, Farci S, Braun E, Junot C, Cassier-Chauvat C, Chauvat F.

Mol Microbiol. 2016 Apr;100(1):15-24. doi: 10.1111/mmi.13296. Epub 2016 Feb 9.


Annotation of the Staphylococcus aureus Metabolome Using Liquid Chromatography Coupled to High-Resolution Mass Spectrometry and Application to the Study of Methicillin Resistance.

Aros-Calt S, Muller BH, Boudah S, Ducruix C, Gervasi G, Junot C, Fenaille F.

J Proteome Res. 2015 Nov 6;14(11):4863-75. doi: 10.1021/acs.jproteome.5b00697. Epub 2015 Oct 26.


Multiplex quantification of protein toxins in human biofluids and food matrices using immunoextraction and high-resolution targeted mass spectrometry.

Dupré M, Gilquin B, Fenaille F, Feraudet-Tarisse C, Dano J, Ferro M, Simon S, Junot C, Brun V, Becher F.

Anal Chem. 2015 Aug 18;87(16):8473-80. doi: 10.1021/acs.analchem.5b01900. Epub 2015 Jul 29.


Evaluation of a combined glycomics and glycoproteomics approach for studying the major glycoproteins present in biofluids: Application to cerebrospinal fluid.

Goyallon A, Cholet S, Chapelle M, Junot C, Fenaille F.

Rapid Commun Mass Spectrom. 2015 Mar 30;29(6):461-73. doi: 10.1002/rcm.7125.


Can we trust untargeted metabolomics? Results of the metabo-ring initiative, a large-scale, multi-instrument inter-laboratory study.

Martin JC, Maillot M, Mazerolles G, Verdu A, Lyan B, Migné C, Defoort C, Canlet C, Junot C, Guillou C, Manach C, Jabob D, Bouveresse DJ, Paris E, Pujos-Guillot E, Jourdan F, Giacomoni F, Courant F, Favé G, Le Gall G, Chassaigne H, Tabet JC, Martin JF, Antignac JP, Shintu L, Defernez M, Philo M, Alexandre-Gouaubau MC, Amiot-Carlin MJ, Bossis M, Triba MN, Stojilkovic N, Banzet N, Molinié R, Bott R, Goulitquer S, Caldarelli S, Rutledge DN.

Metabolomics. 2015;11(4):807-821. Epub 2014 Oct 14.


Analysis of the Human Adult Urinary Metabolome Variations with Age, Body Mass Index, and Gender by Implementing a Comprehensive Workflow for Univariate and OPLS Statistical Analyses.

Thévenot EA, Roux A, Xu Y, Ezan E, Junot C.

J Proteome Res. 2015 Aug 7;14(8):3322-35. doi: 10.1021/acs.jproteome.5b00354. Epub 2015 Jul 2.


Phage amplification and immunomagnetic separation combined with targeted mass spectrometry for sensitive detection of viable bacteria in complex food matrices.

Martelet A, L'Hostis G, Nevers MC, Volland H, Junot C, Becher F, Muller BH.

Anal Chem. 2015 Jun 2;87(11):5553-60. doi: 10.1021/ac504508a. Epub 2015 May 14.


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