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Items: 1 to 50 of 52

1.

RNA Tomography for Spatially Resolved Transcriptomics (Tomo-Seq).

Holler K, Junker JP.

Methods Mol Biol. 2019;1920:129-141. doi: 10.1007/978-1-4939-9009-2_9.

PMID:
30737690
2.

Detouring the roadblocks in gene expression.

Junker JP.

Nat Rev Mol Cell Biol. 2019 Apr;20(4):197. doi: 10.1038/s41580-019-0107-5. No abstract available.

PMID:
30733603
3.

Potential benefits of triage for the trauma patient in a Kenyan emergency department.

Lampi M, Junker JPE, Tabu JS, Berggren P, Jonson CO, Wladis A.

BMC Emerg Med. 2018 Nov 29;18(1):49. doi: 10.1186/s12873-018-0200-7.

4.

Spatial Transcriptomics of C. elegans Males and Hermaphrodites Identifies Sex-Specific Differences in Gene Expression Patterns.

Ebbing A, Vértesy Á, Betist MC, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC.

Dev Cell. 2018 Dec 17;47(6):801-813.e6. doi: 10.1016/j.devcel.2018.10.016. Epub 2018 Nov 8.

PMID:
30416013
5.

Simultaneous lineage tracing and cell-type identification using CRISPR-Cas9-induced genetic scars.

Spanjaard B, Hu B, Mitic N, Olivares-Chauvet P, Janjuha S, Ninov N, Junker JP.

Nat Biotechnol. 2018 Jun;36(5):469-473. doi: 10.1038/nbt.4124. Epub 2018 Apr 9.

6.

Methods for lineage tracing on the organism-wide level.

Spanjaard B, Junker JP.

Curr Opin Cell Biol. 2017 Dec;49:16-21. doi: 10.1016/j.ceb.2017.11.004. Epub 2017 Nov 22. Review.

PMID:
29175321
7.

Tomo-Seq Identifies SOX9 as a Key Regulator of Cardiac Fibrosis During Ischemic Injury.

Lacraz GPA, Junker JP, Gladka MM, Molenaar B, Scholman KT, Vigil-Garcia M, Versteeg D, de Ruiter H, Vermunt MW, Creyghton MP, Huibers MMH, de Jonge N, van Oudenaarden A, van Rooij E.

Circulation. 2017 Oct 10;136(15):1396-1409. doi: 10.1161/CIRCULATIONAHA.117.027832. Epub 2017 Jul 19.

PMID:
28724751
8.

Transforming growth factor β1 regulates the expression of CCN2 in human keratinocytes via Smad-ERK signalling.

Kiwanuka E, Junker JP, Eriksson E.

Int Wound J. 2017 Dec;14(6):1006-1018. doi: 10.1111/iwj.12749. Epub 2017 Mar 29.

PMID:
28371159
9.

Topical Minocycline Effectively Decontaminates and Reduces Inflammation in Infected Porcine Wounds.

Daly LT, Tsai DM, Singh M, Nuutila K, Minasian RA, Lee CC, Kiwanuka E, Hackl F, Onderdonk AB, Junker JP, Eriksson E, Caterson EJ.

Plast Reconstr Surg. 2016 Nov;138(5):856e-868e.

PMID:
27782997
10.

Patched Receptors Sense, Interpret, and Establish an Epidermal Hedgehog Signaling Gradient.

Adolphe C, Junker JP, Lyubimova A, van Oudenaarden A, Wainwright B.

J Invest Dermatol. 2017 Jan;137(1):179-186. doi: 10.1016/j.jid.2016.06.632. Epub 2016 Aug 4.

11.

Tomo-seq: A method to obtain genome-wide expression data with spatial resolution.

Kruse F, Junker JP, van Oudenaarden A, Bakkers J.

Methods Cell Biol. 2016;135:299-307. doi: 10.1016/bs.mcb.2016.01.006. Epub 2016 Feb 26.

PMID:
27443932
12.

Full-thickness porcine burns infected with Staphylococcus aureus or Pseudomonas aeruginosa can be effectively treated with topical antibiotics.

Tsai DM, Tracy LE, Lee CC, Hackl F, Kiwanuka E, Minasian RA, Onderdonk A, Junker JP, Eriksson E, Caterson EJ.

Wound Repair Regen. 2016 Mar;24(2):356-65. doi: 10.1111/wrr.12409. Epub 2016 Mar 31.

PMID:
26800421
13.

Spatially Resolved Genome-wide Transcriptional Profiling Identifies BMP Signaling as Essential Regulator of Zebrafish Cardiomyocyte Regeneration.

Wu CC, Kruse F, Vasudevarao MD, Junker JP, Zebrowski DC, Fischer K, Noël ES, Grün D, Berezikov E, Engel FB, van Oudenaarden A, Weidinger G, Bakkers J.

Dev Cell. 2016 Jan 11;36(1):36-49. doi: 10.1016/j.devcel.2015.12.010. Epub 2015 Dec 31.

14.

A Gene Regulatory Program for Meiotic Prophase in the Fetal Ovary.

Soh YQ, Junker JP, Gill ME, Mueller JL, van Oudenaarden A, Page DC.

PLoS Genet. 2015 Sep 17;11(9):e1005531. doi: 10.1371/journal.pgen.1005531. eCollection 2015 Sep.

15.

DAZL regulates Tet1 translation in murine embryonic stem cells.

Welling M, Chen HH, Muñoz J, Musheev MU, Kester L, Junker JP, Mischerikow N, Arbab M, Kuijk E, Silberstein L, Kharchenko PV, Geens M, Niehrs C, van de Velde H, van Oudenaarden A, Heck AJ, Geijsen N.

EMBO Rep. 2015 Jul;16(7):791-802. doi: 10.15252/embr.201540538. Epub 2015 Jun 15.

16.

Single-cell transcriptomics enters the age of mass production.

Junker JP, van Oudenaarden A.

Mol Cell. 2015 May 21;58(4):563-4. doi: 10.1016/j.molcel.2015.05.019.

17.

Licensing of primordial germ cells for gametogenesis depends on genital ridge signaling.

Hu YC, Nicholls PK, Soh YQ, Daniele JR, Junker JP, van Oudenaarden A, Page DC.

PLoS Genet. 2015 Mar 4;11(3):e1005019. doi: 10.1371/journal.pgen.1005019. eCollection 2015 Mar.

18.

Ascl2 acts as an R-spondin/Wnt-responsive switch to control stemness in intestinal crypts.

Schuijers J, Junker JP, Mokry M, Hatzis P, Koo BK, Sasselli V, van der Flier LG, Cuppen E, van Oudenaarden A, Clevers H.

Cell Stem Cell. 2015 Feb 5;16(2):158-70. doi: 10.1016/j.stem.2014.12.006. Epub 2015 Jan 22.

19.

Topical delivery of ultrahigh concentrations of gentamicin is highly effective in reducing bacterial levels in infected porcine full-thickness wounds.

Junker JP, Lee CC, Samaan S, Hackl F, Kiwanuka E, Minasian RA, Tsai DM, Tracy LE, Onderdonk AB, Eriksson E, Caterson EJ.

Plast Reconstr Surg. 2015 Jan;135(1):151-9. doi: 10.1097/PRS.0000000000000801.

PMID:
25539303
20.

A predictive model of bifunctional transcription factor signaling during embryonic tissue patterning.

Junker JP, Peterson KA, Nishi Y, Mao J, McMahon AP, van Oudenaarden A.

Dev Cell. 2014 Nov 24;31(4):448-60. doi: 10.1016/j.devcel.2014.10.017. Epub 2014 Nov 24.

21.

Genome-wide RNA Tomography in the zebrafish embryo.

Junker JP, Noël ES, Guryev V, Peterson KA, Shah G, Huisken J, McMahon AP, Berezikov E, Bakkers J, van Oudenaarden A.

Cell. 2014 Oct 23;159(3):662-75. doi: 10.1016/j.cell.2014.09.038.

22.

Sustained release of amnion-derived cellular cytokine solution facilitates achilles tendon healing in rats.

Kueckelhaus M, Philip J, Kamel RA, Canseco JA, Hackl F, Kiwanuka E, Kim MJ, Wilkie R, Caterson EJ, Junker JP, Eriksson E.

Eplasty. 2014 Aug 4;14:e29. eCollection 2014.

23.

Cdc42 and p190RhoGAP activation by CCN2 regulates cell spreading and polarity and induces actin disassembly in migrating keratinocytes.

Kiwanuka E, Lee CC, Hackl F, Caterson EJ, Junker JP, Gerdin B, Eriksson E.

Int Wound J. 2016 Jun;13(3):372-81. doi: 10.1111/iwj.12315. Epub 2014 Sep 3.

PMID:
25185742
24.

Assessing quality of healing in skin: review of available methods and devices.

Junker JP, Philip J, Kiwanuka E, Hackl F, Caterson EJ, Eriksson E.

Wound Repair Regen. 2014 May;22 Suppl 1:2-10. doi: 10.1111/wrr.12162. Review.

PMID:
24813357
25.

Every cell is special: genome-wide studies add a new dimension to single-cell biology.

Junker JP, van Oudenaarden A.

Cell. 2014 Mar 27;157(1):8-11. doi: 10.1016/j.cell.2014.02.010. Review.

26.

Clinical Impact Upon Wound Healing and Inflammation in Moist, Wet, and Dry Environments.

Junker JP, Kamel RA, Caterson EJ, Eriksson E.

Adv Wound Care (New Rochelle). 2013 Sep;2(7):348-356. Review.

27.

CCN2 is transiently expressed by keratinocytes during re-epithelialization and regulates keratinocyte migration in vitro by the ras-MEK-ERK signaling pathway.

Kiwanuka E, Hackl F, Caterson EJ, Nowinski D, Junker JP, Gerdin B, Eriksson E.

J Surg Res. 2013 Dec;185(2):e109-19. doi: 10.1016/j.jss.2013.05.065. Epub 2013 Jun 10.

PMID:
24079812
28.

CCN2 promotes keratinocyte adhesion and migration via integrin α5β1.

Kiwanuka E, Andersson L, Caterson EJ, Junker JP, Gerdin B, Eriksson E.

Exp Cell Res. 2013 Nov 15;319(19):2938-46. doi: 10.1016/j.yexcr.2013.08.021. Epub 2013 Aug 26.

PMID:
23988606
29.

Single-molecule mRNA detection and counting in mammalian tissue.

Lyubimova A, Itzkovitz S, Junker JP, Fan ZP, Wu X, van Oudenaarden A.

Nat Protoc. 2013 Sep;8(9):1743-58. doi: 10.1038/nprot.2013.109. Epub 2013 Aug 15.

PMID:
23949380
30.

Moist dressing coverage supports proliferation and migration of transplanted skin micrografts in full-thickness porcine wounds.

Hackl F, Kiwanuka E, Philip J, Gerner P, Aflaki P, Diaz-Siso JR, Sisk G, Caterson EJ, Junker JP, Eriksson E.

Burns. 2014 Mar;40(2):274-80. doi: 10.1016/j.burns.2013.06.002. Epub 2013 Jul 6.

PMID:
23838078
31.

Tissue engineering of skin.

Kamel RA, Ong JF, Eriksson E, Junker JP, Caterson EJ.

J Am Coll Surg. 2013 Sep;217(3):533-55. doi: 10.1016/j.jamcollsurg.2013.03.027. Epub 2013 Jun 29. Review. No abstract available.

PMID:
23816384
32.

Amnion-derived multipotent progenitor cells improve achilles tendon repair in rats.

Philip J, Hackl F, Canseco JA, Kamel RA, Kiwanuka E, Diaz-Siso JR, Caterson EJ, Junker JP, Eriksson E.

Eplasty. 2013 Jun 19;13:e31. Print 2013.

33.

Differentiation of human dermal fibroblasts towards endothelial cells.

Junker JP, Lönnqvist S, Rakar J, Karlsson LK, Grenegård M, Kratz G.

Differentiation. 2013 Feb;85(3):67-77. doi: 10.1016/j.diff.2013.01.005. Epub 2013 May 3.

PMID:
23644553
34.

Osteogenically-induced human dermal fibroblasts as a tool to regenerate bone.

Sommar P, Junker JP, Strandenes E, Ness C, Hansson T, Johnson H, Kratz G.

J Plast Surg Hand Surg. 2013 Feb;47(1):8-13. doi: 10.3109/2000656X.2012.731411.

PMID:
23327789
35.

The microenvironment of wound healing.

Junker JP, Caterson EJ, Eriksson E.

J Craniofac Surg. 2013 Jan;24(1):12-6. doi: 10.1097/SCS.0b013e31827104fb. Review.

PMID:
23321873
36.

Neural-specific Sox2 input and differential Gli-binding affinity provide context and positional information in Shh-directed neural patterning.

Peterson KA, Nishi Y, Ma W, Vedenko A, Shokri L, Zhang X, McFarlane M, Baizabal JM, Junker JP, van Oudenaarden A, Mikkelsen T, Bernstein BE, Bailey TL, Bulyk ML, Wong WH, McMahon AP.

Genes Dev. 2012 Dec 15;26(24):2802-16. doi: 10.1101/gad.207142.112.

37.

Craniofacial principles in face transplantation.

Caterson EJ, Diaz-Siso JR, Shetye P, Junker JP, Bueno EM, Soga S, Rybicki FJ, Pomahac B.

J Craniofac Surg. 2012 Sep;23(5):1234-8.

PMID:
22948648
38.

Identification of molecular compartments and genetic circuitry in the developing mammalian kidney.

Yu J, Valerius MT, Duah M, Staser K, Hansard JK, Guo JJ, McMahon J, Vaughan J, Faria D, Georgas K, Rumballe B, Ren Q, Krautzberger AM, Junker JP, Thiagarajan RD, Machanick P, Gray PA, van Oudenaarden A, Rowitch DH, Stiles CD, Ma Q, Grimmond SM, Bailey TL, Little MH, McMahon AP.

Development. 2012 May;139(10):1863-73. doi: 10.1242/dev.074005.

39.

Epidermal regeneration by micrograft transplantation with immediate 100-fold expansion.

Hackl F, Bergmann J, Granter SR, Koyama T, Kiwanuka E, Zuhaili B, Pomahac B, Caterson EJ, Junker JP, Eriksson E.

Plast Reconstr Surg. 2012 Mar;129(3):443e-452e. doi: 10.1097/PRS.0b013e318241289c.

PMID:
22373992
40.

When noisy neighbors are a blessing: analysis of gene expression noise identifies coregulated genes.

Junker JP, van Oudenaarden A.

Mol Cell. 2012 Feb 24;45(4):437-8. doi: 10.1016/j.molcel.2012.02.002.

41.

Comparison of healing parameters in porcine full-thickness wounds transplanted with skin micrografts, split-thickness skin grafts, and cultured keratinocytes.

Kiwanuka E, Hackl F, Philip J, Caterson EJ, Junker JP, Eriksson E.

J Am Coll Surg. 2011 Dec;213(6):728-35. doi: 10.1016/j.jamcollsurg.2011.08.020. Epub 2011 Oct 21.

PMID:
22018809
42.

Transplantation of acellular dermis and keratinocytes cultured on porous biodegradable microcarriers into full-thickness skin injuries on athymic rats.

Seland H, Gustafson CJ, Johnson H, Junker JP, Kratz G.

Burns. 2011 Feb;37(1):99-108. doi: 10.1016/j.burns.2010.03.014. Epub 2010 Jul 13.

PMID:
20630659
43.

Evidence for a broad transition-state ensemble in calmodulin folding from single-molecule force spectroscopy.

Junker JP, Rief M.

Angew Chem Int Ed Engl. 2010 Apr 26;49(19):3306-9. doi: 10.1002/anie.200905747. No abstract available.

PMID:
20352635
44.

Single-molecule force spectroscopy distinguishes target binding modes of calmodulin.

Junker JP, Rief M.

Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14361-6. doi: 10.1073/pnas.0904654106. Epub 2009 Aug 10.

45.

Adipogenic, chondrogenic and osteogenic differentiation of clonally derived human dermal fibroblasts.

Junker JP, Sommar P, Skog M, Johnson H, Kratz G.

Cells Tissues Organs. 2010;191(2):105-18. doi: 10.1159/000232157. Epub 2009 Jul 28.

PMID:
19641298
46.

Human dermal fibroblasts: a potential cell source for endothelialization of vascular grafts.

Karlsson LK, Junker JP, Grenegård M, Kratz G.

Ann Vasc Surg. 2009 Sep-Oct;23(5):663-74. doi: 10.1016/j.avsg.2009.03.007. Epub 2009 Jul 3.

PMID:
19576728
47.

Engineering three-dimensional cartilage- and bone-like tissues using human dermal fibroblasts and macroporous gelatine microcarriers.

Sommar P, Pettersson S, Ness C, Johnson H, Kratz G, Junker JP.

J Plast Reconstr Aesthet Surg. 2010 Jun;63(6):1036-46. doi: 10.1016/j.bjps.2009.02.072. Epub 2009 Mar 29.

PMID:
19329368
48.

Ligand-dependent equilibrium fluctuations of single calmodulin molecules.

Junker JP, Ziegler F, Rief M.

Science. 2009 Jan 30;323(5914):633-7. doi: 10.1126/science.1166191.

49.

Mechanical tension stimulates the transdifferentiation of fibroblasts into myofibroblasts in human burn scars.

Junker JP, Kratz C, Tollbäck A, Kratz G.

Burns. 2008 Nov;34(7):942-6. doi: 10.1016/j.burns.2008.01.010. Epub 2008 May 8.

PMID:
18472340
50.

Cysteine engineering of polyproteins for single-molecule force spectroscopy.

Dietz H, Bertz M, Schlierf M, Berkemeier F, Bornschlögl T, Junker JP, Rief M.

Nat Protoc. 2006;1(1):80-4.

PMID:
17406215

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