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Metabolic processes applied to endangered metal and wood heritage objects: Call a microbial plumber!

Joseph E, Junier P.

N Biotechnol. 2019 Nov 6;56:21-26. doi: 10.1016/j.nbt.2019.11.003. [Epub ahead of print] Review.


The wild-type flagellar filament of the Firmicute Kurthia at 2.8 Å resolution in vivo.

Blum TB, Filippidou S, Fatton M, Junier P, Abrahams JP.

Sci Rep. 2019 Oct 18;9(1):14948. doi: 10.1038/s41598-019-51440-1.


Comparison of the plant growth-promotion performance of a consortium of Bacilli inoculated as endospores or as vegetative cells.

Hashmi I, Paul C, Al-Dourobi A, Sandoz F, Deschamps P, Junier T, Junier P, Bindschedler S.

FEMS Microbiol Ecol. 2019 Nov 1;95(11). pii: fiz147. doi: 10.1093/femsec/fiz147.


Effect of Organic Carbon and Nitrogen on the Interactions of Morchella spp. and Bacteria Dispersing on Their Mycelium.

Lohberger A, Spangenberg JE, Ventura Y, Bindschedler S, Verrecchia EP, Bshary R, Junier P.

Front Microbiol. 2019 Mar 1;10:124. doi: 10.3389/fmicb.2019.00124. eCollection 2019.


Adaptive Strategies in a Poly-Extreme Environment: Differentiation of Vegetative Cells in Serratia ureilytica and Resistance to Extreme Conditions.

Filippidou S, Junier T, Wunderlin T, Kooli WM, Palmieri I, Al-Dourobi A, Molina V, Lienhard R, Spangenberg JE, Johnson SL, Chain PSG, Dorador C, Junier P.

Front Microbiol. 2019 Feb 5;10:102. doi: 10.3389/fmicb.2019.00102. eCollection 2019.


Bacterial spores, from ecology to biotechnology.

Paul C, Filippidou S, Jamil I, Kooli W, House GL, Estoppey A, Hayoz M, Junier T, Palmieri F, Wunderlin T, Lehmann A, Bindschedler S, Vennemann T, Chain PSG, Junier P.

Adv Appl Microbiol. 2019;106:79-111. doi: 10.1016/bs.aambs.2018.10.002. Epub 2018 Nov 27.


Oxalic acid, a molecule at the crossroads of bacterial-fungal interactions.

Palmieri F, Estoppey A, House GL, Lohberger A, Bindschedler S, Chain PSG, Junier P.

Adv Appl Microbiol. 2019;106:49-77. doi: 10.1016/bs.aambs.2018.10.001. Epub 2018 Nov 27.


Remedial Treatment of Corroded Iron Objects by Environmental Aeromonas Isolates.

Kooli WM, Junier T, Shakya M, Monachon M, Davenport KW, Vaideeswaran K, Vernudachi A, Marozau I, Monrouzeau T, Gleasner CD, McMurry K, Lienhard R, Rufener L, Perret JL, Sereda O, Chain PS, Joseph E, Junier P.

Appl Environ Microbiol. 2019 Jan 23;85(3). pii: e02042-18. doi: 10.1128/AEM.02042-18. Print 2019 Feb 1.


Dissemination of antibiotic resistance genes associated with the sporobiota in sediments impacted by wastewater.

Paul C, Bayrychenko Z, Junier T, Filippidou S, Beck K, Bueche M, Greub G, Bürgmann H, Junier P.

PeerJ. 2018 Jun 20;6:e4989. doi: 10.7717/peerj.4989. eCollection 2018.


Bacterial-fungal interactions: ecology, mechanisms and challenges.

Deveau A, Bonito G, Uehling J, Paoletti M, Becker M, Bindschedler S, Hacquard S, Hervé V, Labbé J, Lastovetsky OA, Mieszkin S, Millet LJ, Vajna B, Junier P, Bonfante P, Krom BP, Olsson S, van Elsas JD, Wick LY.

FEMS Microbiol Rev. 2018 May 1;42(3):335-352. doi: 10.1093/femsre/fuy008. Review.


Bacterial iron reduction and biogenic mineral formation for the stabilisation of corroded iron objects.

Kooli WM, Comensoli L, Maillard J, Albini M, Gelb A, Junier P, Joseph E.

Sci Rep. 2018 Jan 15;8(1):764. doi: 10.1038/s41598-017-19020-3.


A historical legacy of antibiotic utilization on bacterial seed banks in sediments.

Madueño L, Paul C, Junier T, Bayrychenko Z, Filippidou S, Beck K, Greub G, Bürgmann H, Junier P.

PeerJ. 2018 Jan 3;6:e4197. doi: 10.7717/peerj.4197. eCollection 2018.


Microbial biotechnology approaches to mitigating the deterioration of construction and heritage materials.

Junier P, Joseph E.

Microb Biotechnol. 2017 Sep;10(5):1145-1148. doi: 10.1111/1751-7915.12795. Epub 2017 Aug 3.


Fungal Biorecovery of Gold From E-waste.

Bindschedler S, Vu Bouquet TQT, Job D, Joseph E, Junier P.

Adv Appl Microbiol. 2017;99:53-81. doi: 10.1016/bs.aambs.2017.02.002. Epub 2017 Mar 31. Review.


Use of Bacteria To Stabilize Archaeological Iron.

Comensoli L, Maillard J, Albini M, Sandoz F, Junier P, Joseph E.

Appl Environ Microbiol. 2017 Apr 17;83(9). pii: e03478-16. doi: 10.1128/AEM.03478-16. Print 2017 May 1.


Iron and Fungal Physiology: A Review of Biotechnological Opportunities.

Comensoli L, Bindschedler S, Junier P, Joseph E.

Adv Appl Microbiol. 2017;98:31-60. doi: 10.1016/bs.aambs.2016.11.001. Epub 2016 Dec 29. Review.


A Combination of Extreme Environmental Conditions Favor the Prevalence of Endospore-Forming Firmicutes.

Filippidou S, Wunderlin T, Junier T, Jeanneret N, Dorador C, Molina V, Johnson DR, Junier P.

Front Microbiol. 2016 Nov 3;7:1707. eCollection 2016.


An in situ inventory of fungi and their associated migrating bacteria in forest soils using fungal highway columns.

Simon A, Hervé V, Al-Dourobi A, Verrecchia E, Junier P.

FEMS Microbiol Ecol. 2017 Jan;93(1). pii: fiw217. Epub 2016 Oct 18.


Anoxybacillusgeothermalis sp. nov., a facultatively anaerobic, endospore-forming bacterium isolated from mineral deposits in a geothermal station.

Filippidou S, Jaussi M, Junier T, Wunderlin T, Jeanneret N, Palmieri F, Palmieri I, Roussel-Delif L, Vieth-Hillebrand A, Vetter A, Chain PS, Regenspurg S, Junier P.

Int J Syst Evol Microbiol. 2016 Aug;66(8):2944-2951. doi: 10.1099/ijsem.0.001125. Epub 2016 Apr 28.


Physical Isolation of Endospores from Environmental Samples by Targeted Lysis of Vegetative Cells.

Wunderlin T, Junier T, Paul C, Jeanneret N, Junier P.

J Vis Exp. 2016 Jan 21;(107):e53411. doi: 10.3791/53411.


Effect of organic carbon and metal accumulation on the bacterial communities in sulphidogenic sediments.

Bueche M, Junier P.

Environ Sci Pollut Res Int. 2016 Jun;23(11):10443-10456. doi: 10.1007/s11356-016-6056-z. Epub 2016 Jan 16.


Diversity and ecology of oxalotrophic bacteria.

Hervé V, Junier T, Bindschedler S, Verrecchia E, Junier P.

World J Microbiol Biotechnol. 2016 Feb;32(2):28. doi: 10.1007/s11274-015-1982-3. Epub 2016 Jan 9. Review.


Metaproteomics and ultrastructure characterization of Komagataeibacter spp. involved in high-acid spirit vinegar production.

Andrés-Barrao C, Saad MM, Cabello Ferrete E, Bravo D, Chappuis ML, Ortega Pérez R, Junier P, Perret X, Barja F.

Food Microbiol. 2016 May;55:112-22. doi: 10.1016/ Epub 2015 Oct 20.


Exploiting the fungal highway: development of a novel tool for the in situ isolation of bacteria migrating along fungal mycelium.

Simon A, Bindschedler S, Job D, Wick LY, Filippidou S, Kooli WM, Verrecchia EP, Junier P.

FEMS Microbiol Ecol. 2015 Nov;91(11). pii: fiv116. doi: 10.1093/femsec/fiv116. Epub 2015 Oct 1.


Genome Sequence of Bacillus alveayuensis Strain 24KAM51, a Halotolerant Thermophile Isolated from a Hydrothermal Vent.

Filippidou S, Wunderlin T, Junier T, Jeanneret N, Johnson S, McMurry K, Gleasner CD, Lo CC, Li PE, Vuyisich M, Chain PS, Junier P.

Genome Announc. 2015 Aug 27;3(4). pii: e00982-15. doi: 10.1128/genomeA.00982-15.


Genome Sequence of Aeribacillus pallidus Strain GS3372, an Endospore-Forming Bacterium Isolated in a Deep Geothermal Reservoir.

Filippidou S, Jaussi M, Junier T, Wunderlin T, Jeanneret N, Regenspurg S, Li PE, Lo CC, Johnson S, McMurry K, Gleasner CD, Vuyisich M, Chain PS, Junier P.

Genome Announc. 2015 Aug 27;3(4). pii: e00981-15. doi: 10.1128/genomeA.00981-15.


MLgsc: A Maximum-Likelihood General Sequence Classifier.

Junier T, Hervé V, Wunderlin T, Junier P.

PLoS One. 2015 Jul 6;10(7):e0129384. doi: 10.1371/journal.pone.0129384. eCollection 2015.


Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species.

Filippidou S, Jaussi M, Junier T, Wunderlin T, Roussel-Delif L, Jeanneret N, Vieth-Hillebrand A, Vetter A, Regenspurg S, Johnson SL, McMurry K, Gleasner CD, Lo CC, Li P, Vuyisich M, Chain PS, Junier P.

Genome Announc. 2015 Jun 11;3(3). pii: e00575-15. doi: 10.1128/genomeA.00575-15.


Under-detection of endospore-forming Firmicutes in metagenomic data.

Filippidou S, Junier T, Wunderlin T, Lo CC, Li PE, Chain PS, Junier P.

Comput Struct Biotechnol J. 2015 Apr 25;13:299-306. doi: 10.1016/j.csbj.2015.04.002. eCollection 2015.


Genome Sequence of Kosakonia radicincitans Strain YD4, a Plant Growth-Promoting Rhizobacterium Isolated from Yerba Mate (Ilex paraguariensis St. Hill.).

Bergottini VM, Filippidou S, Junier T, Johnson S, Chain PS, Otegui MB, Zapata PD, Junier P.

Genome Announc. 2015 Apr 2;3(2). pii: e00239-15. doi: 10.1128/genomeA.00239-15.


Endospore-enriched sequencing approach reveals unprecedented diversity of Firmicutes in sediments.

Wunderlin T, Junier T, Roussel-Delif L, Jeanneret N, Junier P.

Environ Microbiol Rep. 2014 Dec;6(6):631-9.


Isolation and characterization of oxalotrophic bacteria from tropical soils.

Bravo D, Braissant O, Cailleau G, Verrecchia E, Junier P.

Arch Microbiol. 2015 Jan;197(1):65-77. doi: 10.1007/s00203-014-1055-2. Epub 2014 Nov 9.


Stage 0 sporulation gene A as a molecular marker to study diversity of endospore-forming Firmicutes.

Wunderlin T, Junier T, Roussel-Delif L, Jeanneret N, Junier P.

Environ Microbiol Rep. 2013 Dec;5(6):911-24. doi: 10.1111/1758-2229.12094. Epub 2013 Sep 8.


Bacterial farming by the fungus Morchella crassipes.

Pion M, Spangenberg JE, Simon A, Bindschedler S, Flury C, Chatelain A, Bshary R, Job D, Junier P.

Proc Biol Sci. 2013 Oct 30;280(1773):20132242. doi: 10.1098/rspb.2013.2242. Print 2013 Dec 22.


Isolation of oxalotrophic bacteria able to disperse on fungal mycelium.

Bravo D, Cailleau G, Bindschedler S, Simon A, Job D, Verrecchia E, Junier P.

FEMS Microbiol Lett. 2013 Nov;348(2):157-66. doi: 10.1111/1574-6968.12287. Epub 2013 Oct 10.


Identification of active oxalotrophic bacteria by Bromodeoxyuridine DNA labeling in a microcosm soil experiments.

Bravo D, Martin G, David MM, Cailleau G, Verrecchia E, Junier P.

FEMS Microbiol Lett. 2013 Nov;348(2):103-11. doi: 10.1111/1574-6968.12244. Epub 2013 Sep 23.


Gains of bacterial flagellar motility in a fungal world.

Pion M, Bshary R, Bindschedler S, Filippidou S, Wick LY, Job D, Junier P.

Appl Environ Microbiol. 2013 Nov;79(22):6862-7. doi: 10.1128/AEM.01393-13. Epub 2013 Aug 30.


Quantification of endospore-forming firmicutes by quantitative PCR with the functional gene spo0A.

Bueche M, Wunderlin T, Roussel-Delif L, Junier T, Sauvain L, Jeanneret N, Junier P.

Appl Environ Microbiol. 2013 Sep;79(17):5302-12. doi: 10.1128/AEM.01376-13. Epub 2013 Jun 28.


Fungi, bacteria and soil pH: the oxalate-carbonate pathway as a model for metabolic interaction.

Martin G, Guggiari M, Bravo D, Zopfi J, Cailleau G, Aragno M, Job D, Verrecchia E, Junier P.

Environ Microbiol. 2012 Nov;14(11):2960-70. doi: 10.1111/j.1462-2920.2012.02862.x. Epub 2012 Aug 29.


Protection of Metal Artifacts with the Formation of Metal-Oxalates Complexes by Beauveria bassiana.

Joseph E, Cario S, Simon A, Wörle M, Mazzeo R, Junier P, Job D.

Front Microbiol. 2012 Jan 9;2:270. doi: 10.3389/fmicb.2011.00270. eCollection 2011.


Use of an isothermal microcalorimetry assay to characterize microbial oxalotrophic activity.

Bravo D, Braissant O, Solokhina A, Clerc M, Daniels AU, Verrecchia E, Junier P.

FEMS Microbiol Ecol. 2011 Nov;78(2):266-74. doi: 10.1111/j.1574-6941.2011.01158.x. Epub 2011 Jul 14.


Non-uraninite products of microbial U(VI) reduction.

Bernier-Latmani R, Veeramani H, Vecchia ED, Junier P, Lezama-Pacheco JS, Suvorova EI, Sharp JO, Wigginton NS, Bargar JR.

Environ Sci Technol. 2010 Dec 15;44(24):9456-62. doi: 10.1021/es101675a. Epub 2010 Nov 11.


The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1.

Junier P, Junier T, Podell S, Sims DR, Detter JC, Lykidis A, Han CS, Wigginton NS, Gaasterland T, Bernier-Latmani R.

Environ Microbiol. 2010 Oct;12(10):2738-54. doi: 10.1111/j.1462-2920.2010.02242.x.


Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment.

Junier P, Molina V, Dorador C, Hadas O, Kim OS, Junier T, Witzel JP, Imhoff JF.

Appl Microbiol Biotechnol. 2010 Jan;85(3):425-40. doi: 10.1007/s00253-009-2228-9. Review.


Metal reduction by spores of Desulfotomaculum reducens.

Junier P, Frutschi M, Wigginton NS, Schofield EJ, Bargar JR, Bernier-Latmani R.

Environ Microbiol. 2009 Dec;11(12):3007-17. doi: 10.1111/j.1462-2920.2009.02003.x. Epub 2009 Jul 10.


Community analysis of betaproteobacterial ammonia-oxidizing bacteria using the amoCAB operon.

Junier P, Kim OS, Junier T, Ahn TS, Imhoff JF, Witzel KP.

Appl Microbiol Biotechnol. 2009 May;83(1):175-88. doi: 10.1007/s00253-009-1923-x. Epub 2009 Mar 10.


TRiFLe, a program for in silico terminal restriction fragment length polymorphism analysis with user-defined sequence sets.

Junier P, Junier T, Witzel KP.

Appl Environ Microbiol. 2008 Oct;74(20):6452-6. doi: 10.1128/AEM.01394-08. Epub 2008 Aug 29.


Comparative analysis of ammonia monooxygenase (amoA) genes in the water column and sediment-water interface of two lakes and the Baltic Sea.

Kim OS, Junier P, Imhoff JF, Witzel KP.

FEMS Microbiol Ecol. 2008 Nov;66(2):367-78. doi: 10.1111/j.1574-6941.2008.00565.x. Epub 2008 Aug 20.


Evaluation of PCR primer selectivity and phylogenetic specificity by using amplification of 16S rRNA genes from betaproteobacterial ammonia-oxidizing bacteria in environmental samples.

Junier P, Kim OS, Hadas O, Imhoff JF, Witzel KP.

Appl Environ Microbiol. 2008 Aug;74(16):5231-6. doi: 10.1128/AEM.00288-08. Epub 2008 Jun 20.


Comparative in silico analysis of PCR primers suited for diagnostics and cloning of ammonia monooxygenase genes from ammonia-oxidizing bacteria.

Junier P, Kim OS, Molina V, Limburg P, Junier T, Imhoff JF, Witzel KP.

FEMS Microbiol Ecol. 2008 Apr;64(1):141-52. doi: 10.1111/j.1574-6941.2007.00437.x. Epub 2008 Feb 1.

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