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Items: 1 to 50 of 63

1.

Composition and Drivers of Gut Microbial Communities in Arctic-Breeding Shorebirds.

Grond K, Santo Domingo JW, Lanctot RB, Jumpponen A, Bentzen RL, Boldenow ML, Brown SC, Casler B, Cunningham JA, Doll AC, Freeman S, Hill BL, Kendall SJ, Kwon E, Liebezeit JR, Pirie-Dominix L, Rausch J, Sandercock BK.

Front Microbiol. 2019 Oct 9;10:2258. doi: 10.3389/fmicb.2019.02258. eCollection 2019.

2.

Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations.

Roy Chowdhury T, Lee JY, Bottos EM, Brislawn CJ, White RA 3rd, Bramer LM, Brown J, Zucker JD, Kim YM, Jumpponen A, Rice CW, Fansler SJ, Metz TO, McCue LA, Callister SJ, Song HS, Jansson JK.

mSystems. 2019 Jun 11;4(4). pii: e00061-19. doi: 10.1128/mSystems.00061-19.

3.

Chestnuts bred for blight resistance depart nursery with distinct fungal rhizobiomes.

Reazin C, Baird R, Clark S, Jumpponen A.

Mycorrhiza. 2019 Jul;29(4):313-324. doi: 10.1007/s00572-019-00897-z. Epub 2019 May 25.

PMID:
31129728
4.

DNA metabarcoding-Need for robust experimental designs to draw sound ecological conclusions.

Zinger L, Bonin A, Alsos IG, Bálint M, Bik H, Boyer F, Chariton AA, Creer S, Coissac E, Deagle BE, De Barba M, Dickie IA, Dumbrell AJ, Ficetola GF, Fierer N, Fumagalli L, Gilbert MTP, Jarman S, Jumpponen A, Kauserud H, Orlando L, Pansu J, Pawlowski J, Tedersoo L, Thomsen PF, Willerslev E, Taberlet P.

Mol Ecol. 2019 Apr;28(8):1857-1862. doi: 10.1111/mec.15060. Epub 2019 Apr 29. No abstract available.

5.

Microbial Ecology of Snow Reveals Taxa-Specific Biogeographical Structure.

Brown SP, Jumpponen A.

Microb Ecol. 2019 May;77(4):946-958. doi: 10.1007/s00248-019-01357-z. Epub 2019 Mar 13.

PMID:
30868207
6.

Divergence in Diversity and Composition of Root-Associated Fungi Between Greenhouse and Field Studies in a Semiarid Grassland.

Chung YA, Jumpponen A, Rudgers JA.

Microb Ecol. 2019 Jul;78(1):122-135. doi: 10.1007/s00248-018-1277-y. Epub 2018 Nov 12.

PMID:
30421114
7.

Rootstocks Shape the Rhizobiome: Rhizosphere and Endosphere Bacterial Communities in the Grafted Tomato System.

Poudel R, Jumpponen A, Kennelly MM, Rivard CL, Gomez-Montano L, Garrett KA.

Appl Environ Microbiol. 2019 Jan 9;85(2). pii: e01765-18. doi: 10.1128/AEM.01765-18. Print 2019 Jan 15.

8.

Nitrogen enrichment suppresses other environmental drivers and homogenizes salt marsh leaf microbiome.

Daleo P, Alberti J, Jumpponen A, Veach A, Ialonardi F, Iribarne O, Silliman B.

Ecology. 2018 Jun;99(6):1411-1418. doi: 10.1002/ecy.2240. Epub 2018 May 16.

PMID:
29645089
9.

Half-lives of PAHs and temporal microbiota changes in commonly used urban landscaping materials.

Roslund MI, Grönroos M, Rantalainen AL, Jumpponen A, Romantschuk M, Parajuli A, Hyöty H, Laitinen O, Sinkkonen A.

PeerJ. 2018 Mar 19;6:e4508. doi: 10.7717/peerj.4508. eCollection 2018.

10.

Urbanization Reduces Transfer of Diverse Environmental Microbiota Indoors.

Parajuli A, Grönroos M, Siter N, Puhakka R, Vari HK, Roslund MI, Jumpponen A, Nurminen N, Laitinen OH, Hyöty H, Rajaniemi J, Sinkkonen A.

Front Microbiol. 2018 Feb 5;9:84. doi: 10.3389/fmicb.2018.00084. eCollection 2018.

11.

Fire frequency drives decadal changes in soil carbon and nitrogen and ecosystem productivity.

Pellegrini AFA, Ahlström A, Hobbie SE, Reich PB, Nieradzik LP, Staver AC, Scharenbroch BC, Jumpponen A, Anderegg WRL, Randerson JT, Jackson RB.

Nature. 2018 Jan 11;553(7687):194-198. doi: 10.1038/nature24668. Epub 2017 Dec 11.

PMID:
29227988
12.

Fungal Communities and Functional Guilds Shift Along an Elevational Gradient in the Southern Appalachian Mountains.

Veach AM, Stokes CE, Knoepp J, Jumpponen A, Baird R.

Microb Ecol. 2018 Jul;76(1):156-168. doi: 10.1007/s00248-017-1116-6. Epub 2017 Dec 4.

PMID:
29204781
13.

The abundance of health-associated bacteria is altered in PAH polluted soils-Implications for health in urban areas?

Parajuli A, Grönroos M, Kauppi S, Płociniczak T, Roslund MI, Galitskaya P, Laitinen OH, Hyöty H, Jumpponen A, Strömmer R, Romantschuk M, Hui N, Sinkkonen A.

PLoS One. 2017 Nov 16;12(11):e0187852. doi: 10.1371/journal.pone.0187852. eCollection 2017.

14.

Recruitment and establishment of the gut microbiome in arctic shorebirds.

Grond K, Lanctot RB, Jumpponen A, Sandercock BK.

FEMS Microbiol Ecol. 2017 Dec 1;93(12). doi: 10.1093/femsec/fix142.

PMID:
29069418
15.

Ectomycorrhizal Fungal Communities in Urban Parks Are Similar to Those in Natural Forests but Shaped by Vegetation and Park Age.

Hui N, Liu X, Kotze DJ, Jumpponen A, Francini G, Setälä H.

Appl Environ Microbiol. 2017 Nov 16;83(23). pii: e01797-17. doi: 10.1128/AEM.01797-17. Print 2017 Dec 1.

16.

Urban parks provide ecosystem services by retaining metals and nutrients in soils.

Setälä H, Francini G, Allen JA, Jumpponen A, Hui N, Kotze DJ.

Environ Pollut. 2017 Dec;231(Pt 1):451-461. doi: 10.1016/j.envpol.2017.08.010. Epub 2017 Aug 19.

PMID:
28830018
17.

Soil microbial communities are shaped by vegetation type and park age in cities under cold climate.

Hui N, Jumpponen A, Francini G, Kotze DJ, Liu X, Romantschuk M, Strömmer R, Setälä H.

Environ Microbiol. 2017 Mar;19(3):1281-1295. doi: 10.1111/1462-2920.13660. Epub 2017 Feb 1.

PMID:
28063185
18.

Phyllosphere Metaproteomes of Trees from the Brazilian Atlantic Forest Show High Levels of Functional Redundancy.

Lambais MR, Barrera SE, Santos EC, Crowley DE, Jumpponen A.

Microb Ecol. 2017 Jan;73(1):123-134. doi: 10.1007/s00248-016-0878-6. Epub 2016 Nov 16.

PMID:
27853840
19.

Vertical and seasonal dynamics of fungal communities in boreal Scots pine forest soil.

Santalahti M, Sun H, Jumpponen A, Pennanen T, Heinonsalo J.

FEMS Microbiol Ecol. 2016 Nov;92(11). pii: fiw170. doi: 10.1093/femsec/fiw170. Epub 2016 Aug 10.

PMID:
27515733
20.

Microbiome Networks: A Systems Framework for Identifying Candidate Microbial Assemblages for Disease Management.

Poudel R, Jumpponen A, Schlatter DC, Paulitz TC, Gardener BB, Kinkel LL, Garrett KA.

Phytopathology. 2016 Oct;106(10):1083-1096. Epub 2016 Sep 8.

21.

Spatial and successional dynamics of microbial biofilm communities in a grassland stream ecosystem.

Veach AM, Stegen JC, Brown SP, Dodds WK, Jumpponen A.

Mol Ecol. 2016 Sep;25(18):4674-88. doi: 10.1111/mec.13784. Epub 2016 Sep 6.

PMID:
27481285
22.

Habitat conditions and phenological tree traits overrule the influence of tree genotype in the needle mycobiome-Picea glauca system at an arctic treeline ecotone.

Eusemann P, Schnittler M, Nilsson RH, Jumpponen A, Dahl MB, Würth DG, Buras A, Wilmking M, Unterseher M.

New Phytol. 2016 Sep;211(4):1221-31. doi: 10.1111/nph.13988. Epub 2016 May 4.

23.

Woody plant encroachment, and its removal, impact bacterial and fungal communities across stream and terrestrial habitats in a tallgrass prairie ecosystem.

Veach AM, Dodds WK, Jumpponen A.

FEMS Microbiol Ecol. 2015 Oct;91(10). pii: fiv109. doi: 10.1093/femsec/fiv109. Epub 2015 Sep 6.

PMID:
26347079
24.

Fungal Community Shifts in Structure and Function across a Boreal Forest Fire Chronosequence.

Sun H, Santalahti M, Pumpanen J, Köster K, Berninger F, Raffaello T, Jumpponen A, Asiegbu FO, Heinonsalo J.

Appl Environ Microbiol. 2015 Nov;81(22):7869-80. doi: 10.1128/AEM.02063-15. Epub 2015 Sep 4.

25.

Analyses of Sporocarps, Morphotyped Ectomycorrhizae, Environmental ITS and LSU Sequences Identify Common Genera that Occur at a Periglacial Site.

Jumpponen A, Brown SP, Trappe JM, Cázares E, Strömmer R.

J Fungi (Basel). 2015 May 25;1(1):76-93. doi: 10.3390/jof1010076.

26.

Moth outbreaks alter root-associated fungal communities in subarctic mountain birch forests.

Saravesi K, Aikio S, Wäli PR, Ruotsalainen AL, Kaukonen M, Huusko K, Suokas M, Brown SP, Jumpponen A, Tuomi J, Markkola A.

Microb Ecol. 2015 May;69(4):788-97. doi: 10.1007/s00248-015-0577-8. Epub 2015 Feb 17.

PMID:
25687127
27.

Mutualism-parasitism paradigm synthesized from results of root-endophyte models.

Mandyam KG, Jumpponen A.

Front Microbiol. 2015 Jan 12;5:776. doi: 10.3389/fmicb.2014.00776. eCollection 2014.

28.

FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus.

Prestat E, David MM, Hultman J, Taş N, Lamendella R, Dvornik J, Mackelprang R, Myrold DD, Jumpponen A, Tringe SG, Holman E, Mavromatis K, Jansson JK.

Nucleic Acids Res. 2014 Oct 29;42(19):e145. doi: 10.1093/nar/gku702. Epub 2014 Sep 26.

29.

The rich and the sensitive: diverse fungal communities change functionally with the warming Arctic.

Jumpponen A, Brown SP.

Mol Ecol. 2014 Jul;23(13):3127-9. doi: 10.1111/mec.12805.

PMID:
24957161
30.

Altered precipitation regime affects the function and composition of soil microbial communities on multiple time scales.

Zeglin LH, Bottomley PJ, Jumpponen A, Rice CW, Arango M, Lindsley A, McGowan A, Mfombep P, Myrold DD.

Ecology. 2013 Oct;94(10):2334-45.

PMID:
24358718
31.

Comparison of root-associated communities of native and non-native ectomycorrhizal hosts in an urban landscape.

Lothamer K, Brown SP, Mattox JD, Jumpponen A.

Mycorrhiza. 2014 May;24(4):267-80. doi: 10.1007/s00572-013-0539-2. Epub 2013 Nov 13.

32.

Contrasting primary successional trajectories of fungi and bacteria in retreating glacier soils.

Brown SP, Jumpponen A.

Mol Ecol. 2014 Feb;23(2):481-97. doi: 10.1111/mec.12487. Epub 2013 Sep 24.

PMID:
24112459
33.

Deep Ion Torrent sequencing identifies soil fungal community shifts after frequent prescribed fires in a southeastern US forest ecosystem.

Brown SP, Callaham MA Jr, Oliver AK, Jumpponen A.

FEMS Microbiol Ecol. 2013 Dec;86(3):557-66. doi: 10.1111/1574-6941.12181. Epub 2013 Aug 1.

34.

Arabidopsis thaliana model system reveals a continuum of responses to root endophyte colonization.

Mandyam KG, Roe J, Jumpponen A.

Fungal Biol. 2013 Apr;117(4):250-60. doi: 10.1016/j.funbio.2013.02.001. Epub 2013 Feb 19.

35.

Impact of various storage conditions on enzymatic activity, biomass components and conversion to ethanol yields from sorghum biomass used as a bioenergy crop.

Rigdon AR, Jumpponen A, Vadlani PV, Maier DE.

Bioresour Technol. 2013 Mar;132:269-75. doi: 10.1016/j.biortech.2013.01.055. Epub 2013 Jan 18.

36.

Host identity impacts rhizosphere fungal communities associated with three alpine plant species.

Becklin KM, Hertweck KL, Jumpponen A.

Microb Ecol. 2012 Apr;63(3):682-93. doi: 10.1007/s00248-011-9968-7. Epub 2011 Oct 27.

37.

Septate endophyte colonization and host responses of grasses and forbs native to a tallgrass prairie.

Mandyam K, Fox C, Jumpponen A.

Mycorrhiza. 2012 Feb;22(2):109-19. doi: 10.1007/s00572-011-0386-y. Epub 2011 May 3.

38.

Multi-element fingerprinting and high throughput sequencing identify multiple elements that affect fungal communities in Quercus macrocarpa foliage.

Jumpponen A, Keating K, Gadbury G, Jones KL, Mattox JD.

Plant Signal Behav. 2010 Sep;5(9):1157-61. doi: 10.4161/psb.5.9.12681.

39.

Diverse Helotiales associated with the roots of three species of Arctic Ericaceae provide no evidence for host specificity.

Walker JF, Aldrich-Wolfe L, Riffel A, Barbare H, Simpson NB, Trowbridge J, Jumpponen A.

New Phytol. 2011 Jul;191(2):515-27. doi: 10.1111/j.1469-8137.2011.03703.x. Epub 2011 Apr 4.

40.

EcM fungal community structure, but not diversity, altered in a Pb-contaminated shooting range in a boreal coniferous forest site in Southern Finland.

Hui N, Jumpponen A, Niskanen T, Liimatainen K, Jones KL, Koivula T, Romantschuk M, Strömmer R.

FEMS Microbiol Ecol. 2011 Apr;76(1):121-32. doi: 10.1111/j.1574-6941.2010.01038.x. Epub 2011 Jan 20.

41.

Analysis of ribosomal RNA indicates seasonal fungal community dynamics in Andropogon gerardii roots.

Jumpponen A.

Mycorrhiza. 2011 Aug;21(6):453-464. doi: 10.1007/s00572-010-0358-7. Epub 2011 Jan 5.

PMID:
21207073
42.

Species abundance distributions and richness estimations in fungal metagenomics--lessons learned from community ecology.

Unterseher M, Jumpponen A, Opik M, Tedersoo L, Moora M, Dormann CF, Schnittler M.

Mol Ecol. 2011 Jan;20(2):275-85. doi: 10.1111/j.1365-294X.2010.04948.x. Epub 2010 Dec 13.

PMID:
21155911
43.

Vertical distribution of fungal communities in tallgrass prairie soil.

Jumpponen A, Jones KL, Blair J.

Mycologia. 2010 Sep-Oct;102(5):1027-41. doi: 10.3852/09-316.

PMID:
20943503
44.

General stabilizing effects of plant diversity on grassland productivity through population asynchrony and overyielding.

Hector A, Hautier Y, Saner P, Wacker L, Bagchi R, Joshi J, Scherer-Lorenzen M, Spehn EM, Bazeley-White E, Weilenmann M, Caldeira MC, Dimitrakopoulos PG, Finn JA, Huss-Danell K, Jumpponen A, Mulder CP, Palmborg C, Pereira JS, Siamantziouras AS, Terry AC, Troumbis AY, Schmid B, Loreau M.

Ecology. 2010 Aug;91(8):2213-20.

PMID:
20836442
45.

Application of fungistatics in soil reduces N uptake by an arctic ericoid shrub (Vaccinium vitis-idaea).

Walker JF, Johnson LC, Simpson NB, Bill M, Jumpponen A.

Mycologia. 2010 Jul-Aug;102(4):822-34.

PMID:
20648750
46.
47.

Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites.

Jumpponen A, Jones KL, David Mattox J, Yaege C.

Mol Ecol. 2010 Mar;19 Suppl 1:41-53. doi: 10.1111/j.1365-294X.2009.04483.x.

PMID:
20331769
48.

Seasonally dynamic fungal communities in the Quercus macrocarpa phyllosphere differ between urban and nonurban environments.

Jumpponen A, Jones KL.

New Phytol. 2010 Apr;186(2):496-513. doi: 10.1111/j.1469-8137.2010.03197.x. Epub 2010 Feb 17.

49.

Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere.

Jumpponen A, Jones KL.

New Phytol. 2009 Oct;184(2):438-48. doi: 10.1111/j.1469-8137.2009.02990.x. Epub 2009 Aug 11.

50.

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