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Items: 27

1.

First Draft Genome Sequence of Leishmania (Viannia) lainsoni Strain 216-34, Isolated from a Peruvian Clinical Case.

Lin W, Batra D, Narayanan V, Rowe LA, Sheth M, Zheng Y, Juieng P, Loparev V, de Almeida M.

Microbiol Resour Announc. 2019 Feb 7;8(6). pii: e01524-18. doi: 10.1128/MRA.01524-18. eCollection 2019 Feb.

2.

Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species.

Muñoz JF, Gade L, Chow NA, Loparev VN, Juieng P, Berkow EL, Farrer RA, Litvintseva AP, Cuomo CA.

Nat Commun. 2018 Dec 17;9(1):5346. doi: 10.1038/s41467-018-07779-6.

3.

PacBio Genome Sequences of Escherichia coli Serotype O157:H7, Diffusely Adherent E. coli, and Salmonella enterica Strains, All Carrying Plasmids with an mcr-1 Resistance Gene.

Lindsey RL, Batra D, Smith P, Patel PN, Tagg KA, Garcia-Toledo L, Loparev VN, Juieng P, Sheth M, Joung YJ, Rowe LA.

Microbiol Resour Announc. 2018;7(14). pii: e01025-18. doi: 10.1128/MRA.01025-18. Epub 2018 Oct 11.

4.

High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing.

Patel PN, Lindsey RL, Garcia-Toledo L, Rowe LA, Batra D, Whitley SW, Drapeau D, Stoneburg D, Martin H, Juieng P, Loparev VN, Strockbine N.

Genome Announc. 2018 May 10;6(19). pii: e00391-18. doi: 10.1128/genomeA.00391-18.

5.

High-Quality Whole-Genome Sequences for 59 Historical Shigella Strains Generated with PacBio Sequencing.

Kim J, Lindsey RL, Garcia-Toledo L, Loparev VN, Rowe LA, Batra D, Juieng P, Stoneburg D, Martin H, Knipe K, Smith P, Strockbine N.

Genome Announc. 2018 Apr 12;6(15). pii: e00282-18. doi: 10.1128/genomeA.00282-18.

6.

Genome Sequence of a Multidrug-Resistant Candida haemulonii Isolate from a Patient with Chronic Leg Ulcers in Israel.

Chow NA, Gade L, Batra D, Rowe LA, Juieng P, Ben-Ami R, Loparev VN, Litvintseva AP.

Genome Announc. 2018 Apr 12;6(15). pii: e00176-18. doi: 10.1128/genomeA.00176-18.

7.

Genome Sequence of the Amphotericin B-Resistant Candida duobushaemulonii Strain B09383.

Chow NA, Gade L, Batra D, Rowe LA, Juieng P, Loparev VN, Litvintseva AP.

Genome Announc. 2018 Mar 29;6(13). pii: e00204-18. doi: 10.1128/genomeA.00204-18.

8.

Screening and Genomic Characterization of Filamentous Hemagglutinin-Deficient Bordetella pertussis.

Weigand MR, Pawloski LC, Peng Y, Ju H, Burroughs M, Cassiday PK, Davis JK, DuVall M, Johnson T, Juieng P, Knipe K, Loparev VN, Mathis MH, Rowe LA, Sheth M, Williams MM, Tondella ML.

Infect Immun. 2018 Mar 22;86(4). pii: e00869-17. doi: 10.1128/IAI.00869-17. Print 2018 Apr.

9.

High-Quality Complete and Draft Genome Sequences for Three Escherichia spp. and Three Shigella spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping.

Schroeder MR, Juieng P, Batra D, Knipe K, Rowe LA, Sheth M, Smith P, Garcia-Toledo L, Loparev VN, Lindsey RL.

Genome Announc. 2018 Jan 4;6(1). pii: e01384-17. doi: 10.1128/genomeA.01384-17.

10.

Complete Circularized Genome Sequences of Four Strains of Elizabethkingia anophelis, Including Two Novel Strains Isolated from Wild-Caught Anopheles sinensis.

Pei D, Nicholson AC, Jiang J, Chen H, Whitney AM, Villarma A, Bell M, Humrighouse B, Rowe LA, Sheth M, Batra D, Juieng P, Loparev VN, McQuiston JR, Lan Y, Ma Y, Xu J.

Genome Announc. 2017 Nov 22;5(47). pii: e01359-17. doi: 10.1128/genomeA.01359-17.

11.

Twelve Complete Reference Genomes of Clinical Isolates in the Capnocytophaga Genus.

Villarma A, Gulvik CA, Rowe LA, Sheth M, Juieng P, Nicholson AC, Loparev VN, McQuiston JR.

Genome Announc. 2017 Nov 2;5(44). pii: e01186-17. doi: 10.1128/genomeA.01186-17.

12.

Complete Genome Sequences of Bordetella pertussis Isolates with Novel Pertactin-Deficient Deletions.

Weigand MR, Peng Y, Cassiday PK, Loparev VN, Johnson T, Juieng P, Nazarian EJ, Weening K, Tondella ML, Williams MM.

Genome Announc. 2017 Sep 14;5(37). pii: e00973-17. doi: 10.1128/genomeA.00973-17.

13.

High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Shigella sonnei Strains Generated with PacBio Sequencing and Whole-Genome Maps.

Lindsey RL, Batra D, Rowe L, N Loparev V, Juieng P, Garcia-Toledo L, Bicknese A, Stripling D, Martin H, Chen J, Strockbine N, Trees E.

Genome Announc. 2017 Aug 31;5(35). pii: e00906-17. doi: 10.1128/genomeA.00906-17.

14.

Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov.

Nicholson AC, Gulvik CA, Whitney AM, Humrighouse BW, Graziano J, Emery B, Bell M, Loparev V, Juieng P, Gartin J, Bizet C, Clermont D, Criscuolo A, Brisse S, McQuiston JR.

Antonie Van Leeuwenhoek. 2018 Jan;111(1):55-72. doi: 10.1007/s10482-017-0926-3. Epub 2017 Aug 30.

15.

Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain.

Perrin A, Larsonneur E, Nicholson AC, Edwards DJ, Gundlach KM, Whitney AM, Gulvik CA, Bell ME, Rendueles O, Cury J, Hugon P, Clermont D, Enouf V, Loparev V, Juieng P, Monson T, Warshauer D, Elbadawi LI, Walters MS, Crist MB, Noble-Wang J, Borlaug G, Rocha EPC, Criscuolo A, Touchon M, Davis JP, Holt KE, McQuiston JR, Brisse S.

Nat Commun. 2017 May 24;8:15483. doi: 10.1038/ncomms15483.

16.

High-Quality Genome Sequence of an Escherichia coli O157 Strain Carrying an mcr-1 Resistance Gene Isolated from a Patient in the United States.

Lindsey RL, Batra D, Rowe L, Loparev VN, Stripling D, Garcia-Toledo L, Knipe K, Juieng P, Sheth M, Martin H, Laufer Halpin A.

Genome Announc. 2017 Mar 16;5(11). pii: e01725-16. doi: 10.1128/genomeA.01725-16.

17.

The History of Bordetella pertussis Genome Evolution Includes Structural Rearrangement.

Weigand MR, Peng Y, Loparev V, Batra D, Bowden KE, Burroughs M, Cassiday PK, Davis JK, Johnson T, Juieng P, Knipe K, Mathis MH, Pruitt AM, Rowe L, Sheth M, Tondella ML, Williams MM.

J Bacteriol. 2017 Mar 28;199(8). pii: e00806-16. doi: 10.1128/JB.00806-16. Print 2017 Apr 15.

18.

Complete Genome Sequences of Four Bordetella pertussis Vaccine Reference Strains from Serum Institute of India.

Weigand MR, Peng Y, Loparev V, Johnson T, Juieng P, Gairola S, Kumar R, Shaligram U, Gowrishankar R, Moura H, Rees J, Schieltz DM, Williamson Y, Woolfitt A, Barr J, Tondella ML, Williams MM.

Genome Announc. 2016 Dec 22;4(6). pii: e01404-16. doi: 10.1128/genomeA.01404-16.

19.

Distribution and Diversity of Bartonella washoensis Strains in Ground Squirrels from California and Their Potential Link to Human Cases.

Osikowicz LM, Billeter SA, Rizzo MF, Rood MP, Freeman AN, Burns JE, Hu R, Juieng P, Loparev V, Kosoy M.

Vector Borne Zoonotic Dis. 2016 Nov;16(11):683-690. Epub 2016 Oct 5.

20.

Complete Genome Sequences of Four Different Bordetella sp. Isolates Causing Human Respiratory Infections.

Weigand MR, Peng Y, Loparev V, Batra D, Bowden KE, Cassiday PK, Davis JK, Johnson T, Juieng P, Miner CE, Rowe L, Sheth M, Tondella ML, Williams MM.

Genome Announc. 2016 Oct 6;4(5). pii: e01080-16. doi: 10.1128/genomeA.01080-16.

21.

Complete Genome Sequences of Bordetella pertussis Vaccine Reference Strains 134 and 10536.

Weigand MR, Peng Y, Loparev V, Batra D, Burroughs M, Johnson T, Juieng P, Rowe L, Tondella ML, Williams MM.

Genome Announc. 2016 Sep 15;4(5). pii: e00979-16. doi: 10.1128/genomeA.00979-16.

22.

High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps.

Lindsey RL, Rowe L, Garcia-Toledo L, Loparev V, Knipe K, Stripling D, Martin H, Trees E, Juieng P, Batra D, Strockbine N.

Genome Announc. 2016 Jun 30;4(3). pii: e00626-16. doi: 10.1128/genomeA.00626-16.

23.

Complete Genome Sequences of Four Strains from the 2015-2016 Elizabethkingia anophelis Outbreak.

Nicholson AC, Whitney AM, Emery BD, Bell ME, Gartin JT, Humrighouse BW, Loparev VN, Batra D, Sheth M, Rowe LA, Juieng P, Knipe K, Gulvik C, McQuiston JR.

Genome Announc. 2016 Jun 16;4(3). pii: e00563-16. doi: 10.1128/genomeA.00563-16.

24.

Correction for Weigand et al., Complete Genome Sequences of Two Bordetella hinzii Strains Isolated from Humans.

Weigand MR, Changayil S, Kulasekarapandian Y, Batra D, Loparev V, Juieng P, Rowe L, Sheth M, Davis JK, Tondella ML.

Genome Announc. 2016 Jan 14;4(1). pii: e01639-15. doi: 10.1128/genomeA.01639-15. No abstract available.

25.

Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25.

Lindsey RL, Knipe K, Rowe L, Garcia-Toledo L, Loparev V, Juieng P, Trees E, Strockbine N, Stripling D, Gerner-Smidt P.

Genome Announc. 2015 Dec 17;3(6). pii: e01496-15. doi: 10.1128/genomeA.01496-15.

26.

Genome Sequences of Oblitimonas alkaliphila gen. nov. sp. nov. (Proposed), a Novel Bacterium of the Pseudomonadaceae Family.

Lauer AC, Nicholson AC, Humrighouse BW, Emery B, Drobish A, Juieng P, Loparev V, McQuiston JR.

Genome Announc. 2015 Dec 17;3(6). pii: e01474-15. doi: 10.1128/genomeA.01474-15.

27.

Viruses detected among sporadic cases of parotitis, United States, 2009-2011.

Barskey AE, Juieng P, Whitaker BL, Erdman DD, Oberste MS, Chern SW, Schmid DS, Radford KW, McNall RJ, Rota PA, Hickman CJ, Bellini WJ, Wallace GS.

J Infect Dis. 2013 Dec 15;208(12):1979-86. doi: 10.1093/infdis/jit408. Epub 2013 Aug 9.

PMID:
23935203

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