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Items: 1 to 50 of 75

1.

QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient.

Lowry DB, Lovell JT, Zhang L, Bonnette J, Fay PA, Mitchell RB, Lloyd-Reilley J, Boe AR, Wu Y, Rouquette FM Jr, Wynia RL, Weng X, Behrman KD, Healey A, Barry K, Lipzen A, Bauer D, Sharma A, Jenkins J, Schmutz J, Fritschi FB, Juenger TE.

Proc Natl Acad Sci U S A. 2019 Jun 25;116(26):12933-12941. doi: 10.1073/pnas.1821543116. Epub 2019 Jun 10.

2.

Gene Expression analysis associated with salt stress in a reciprocally crossed rice population.

Razzaque S, Elias SM, Haque T, Biswas S, Jewel GMNA, Rahman S, Weng X, Ismail AM, Walia H, Juenger TE, Seraj ZI.

Sci Rep. 2019 Jun 3;9(1):8249. doi: 10.1038/s41598-019-44757-4.

3.

The Genetic Architecture of Shoot and Root Trait Divergence Between Mesic and Xeric Ecotypes of a Perennial Grass.

Khasanova A, Lovell JT, Bonnette J, Weng X, Jenkins J, Yoshinaga Y, Schmutz J, Juenger TE.

Front Plant Sci. 2019 Apr 4;10:366. doi: 10.3389/fpls.2019.00366. eCollection 2019.

4.

Transgenerational effects of inter-ploidy cross direction on reproduction and F2 seed development of Arabidopsis thaliana F1 hybrid triploids.

Duszynska D, Vilhjalmsson B, Castillo Bravo R, Swamidatta S, Juenger TE, Donoghue MTA, Comte A, Nordborg M, Sharbel TF, Brychkova G, McKeown PC, Spillane C.

Plant Reprod. 2019 Sep;32(3):275-289. doi: 10.1007/s00497-019-00369-6. Epub 2019 Mar 21.

PMID:
30903284
5.

Complex interactions between day length and diurnal patterns of gene expression drive photoperiodic responses in a perennial C4 grass.

Weng X, Lovell JT, Schwartz SL, Cheng C, Haque T, Zhang L, Razzaque S, Juenger TE.

Plant Cell Environ. 2019 Jul;42(7):2165-2182. doi: 10.1111/pce.13546. Epub 2019 Apr 1.

PMID:
30847928
6.

Natural Variation in 9-Cis-Epoxycartenoid Dioxygenase 3 and ABA Accumulation.

Kalladan R, Lasky JR, Sharma S, Kumar MN, Juenger TE, Des Marais DL, Verslues PE.

Plant Physiol. 2019 Apr;179(4):1620-1631. doi: 10.1104/pp.18.01185. Epub 2019 Feb 1.

7.

The genomic landscape of molecular responses to natural drought stress in Panicum hallii.

Lovell JT, Jenkins J, Lowry DB, Mamidi S, Sreedasyam A, Weng X, Barry K, Bonnette J, Campitelli B, Daum C, Gordon SP, Gould BA, Khasanova A, Lipzen A, MacQueen A, Palacio-Mejía JD, Plott C, Shakirov EV, Shu S, Yoshinaga Y, Zane M, Kudrna D, Talag JD, Rokhsar D, Grimwood J, Schmutz J, Juenger TE.

Nat Commun. 2018 Dec 6;9(1):5213. doi: 10.1038/s41467-018-07669-x.

8.

Plant compartment and genetic variation drive microbiome composition in switchgrass roots.

Singer E, Bonnette J, Kenaley SC, Woyke T, Juenger TE.

Environ Microbiol Rep. 2019 Apr;11(2):185-195. doi: 10.1111/1758-2229.12727. Epub 2019 Jan 31.

PMID:
30537406
9.

Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae).

Gould BA, Palacio-Mejia JD, Jenkins J, Mamidi S, Barry K, Schmutz J, Juenger TE, Lowry DB.

BMC Genomics. 2018 Nov 1;19(1):792. doi: 10.1186/s12864-018-5179-7.

10.

Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii.

Milano ER, Payne CE, Wolfrum E, Lovell J, Jenkins J, Schmutz J, Juenger TE.

Biotechnol Biofuels. 2018 Feb 3;11:25. doi: 10.1186/s13068-018-1033-z. eCollection 2018.

11.

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.

Gordon SP, Contreras-Moreira B, Woods DP, Des Marais DL, Burgess D, Shu S, Stritt C, Roulin AC, Schackwitz W, Tyler L, Martin J, Lipzen A, Dochy N, Phillips J, Barry K, Geuten K, Budak H, Juenger TE, Amasino R, Caicedo AL, Goodstein D, Davidson P, Mur LAJ, Figueroa M, Freeling M, Catalan P, Vogel JP.

Nat Commun. 2017 Dec 19;8(1):2184. doi: 10.1038/s41467-017-02292-8.

12.

Genetic Mapping Reveals an Anthocyanin Biosynthesis Pathway Gene Potentially Influencing Evolutionary Divergence between Two Subspecies of Scarlet Gilia (Ipomopsis aggregata).

Campitelli BE, Kenney AM, Hopkins R, Soule J, Lovell JT, Juenger TE.

Mol Biol Evol. 2018 Apr 1;35(4):807-822. doi: 10.1093/molbev/msx318. Erratum in: Mol Biol Evol. 2018 Jul 1;35(7):1821.

PMID:
29253197
13.

Geographic variation in hybridization across a reinforcement contact zone of chorus frogs (Pseudacris).

Lemmon EM, Juenger TE.

Ecol Evol. 2017 Oct 11;7(22):9485-9502. doi: 10.1002/ece3.3443. eCollection 2017 Nov.

14.

Natural variation identifies genes affecting drought-induced abscisic acid accumulation in Arabidopsis thaliana.

Kalladan R, Lasky JR, Chang TZ, Sharma S, Juenger TE, Verslues PE.

Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):11536-11541. doi: 10.1073/pnas.1705884114. Epub 2017 Oct 10.

15.

Reproductive stage physiological and transcriptional responses to salinity stress in reciprocal populations derived from tolerant (Horkuch) and susceptible (IR29) rice.

Razzaque S, Haque T, Elias SM, Rahman MS, Biswas S, Schwartz S, Ismail AM, Walia H, Juenger TE, Seraj ZI.

Sci Rep. 2017 Apr 11;7:46138. doi: 10.1038/srep46138.

16.

Interactive effects of water limitation and elevated temperature on the physiology, development and fitness of diverse accessions of Brachypodium distachyon.

Des Marais DL, Lasky JR, Verslues PE, Chang TZ, Juenger TE.

New Phytol. 2017 Apr;214(1):132-144. doi: 10.1111/nph.14316. Epub 2016 Nov 16.

17.

The Genetic Basis of Upland/Lowland Ecotype Divergence in Switchgrass (Panicum virgatum).

Milano ER, Lowry DB, Juenger TE.

G3 (Bethesda). 2016 Nov 8;6(11):3561-3570. doi: 10.1534/g3.116.032763.

18.

Quantitative trait loci associated with natural diversity in water-use efficiency and response to soil drying in Brachypodium distachyon.

Des Marais DL, Razzaque S, Hernandez KM, Garvin DF, Juenger TE.

Plant Sci. 2016 Oct;251:2-11. doi: 10.1016/j.plantsci.2016.03.010. Epub 2016 Mar 24.

PMID:
27593458
19.

Temporal Shift of Circadian-Mediated Gene Expression and Carbon Fixation Contributes to Biomass Heterosis in Maize Hybrids.

Ko DK, Rohozinski D, Song Q, Taylor SH, Juenger TE, Harmon FG, Chen ZJ.

PLoS Genet. 2016 Jul 28;12(7):e1006197. doi: 10.1371/journal.pgen.1006197. eCollection 2016 Jul.

20.

Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana.

Fransz P, Linc G, Lee CR, Aflitos SA, Lasky JR, Toomajian C, Ali H, Peters J, van Dam P, Ji X, Kuzak M, Gerats T, Schubert I, Schneeberger K, Colot V, Martienssen R, Koornneef M, Nordborg M, Juenger TE, de Jong H, Schranz ME.

Plant J. 2016 Oct;88(2):159-178. doi: 10.1111/tpj.13262. Epub 2016 Sep 13.

21.

Adaptive differentiation in floral traits in the presence of high gene flow in scarlet gilia (Ipomopsis aggregata).

Milano ER, Kenney AM, Juenger TE.

Mol Ecol. 2016 Dec;25(23):5862-5875. doi: 10.1111/mec.13752. Epub 2016 Aug 8.

PMID:
27392816
22.

Promises and Challenges of Eco-Physiological Genomics in the Field: Tests of Drought Responses in Switchgrass.

Lovell JT, Shakirov EV, Schwartz S, Lowry DB, Aspinwall MJ, Taylor SH, Bonnette J, Palacio-Mejia JD, Hawkes CV, Fay PA, Juenger TE.

Plant Physiol. 2016 Oct;172(2):734-748. Epub 2016 May 31.

23.

Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C4 grass.

Lovell JT, Schwartz S, Lowry DB, Shakirov EV, Bonnette JE, Weng X, Wang M, Johnson J, Sreedasyam A, Plott C, Jenkins J, Schmutz J, Juenger TE.

Genome Res. 2016 Apr;26(4):510-8. doi: 10.1101/gr.198135.115. Epub 2016 Mar 7.

24.

Ecological interactions and the fitness effect of water-use efficiency: Competition and drought alter the impact of natural MPK12 alleles in Arabidopsis.

Campitelli BE, Des Marais DL, Juenger TE.

Ecol Lett. 2016 Apr;19(4):424-34. doi: 10.1111/ele.12575. Epub 2016 Feb 11.

PMID:
26868103
25.

Genome-environment associations in sorghum landraces predict adaptive traits.

Lasky JR, Upadhyaya HD, Ramu P, Deshpande S, Hash CT, Bonnette J, Juenger TE, Hyma K, Acharya C, Mitchell SE, Buckler ES, Brenton Z, Kresovich S, Morris GP.

Sci Adv. 2015 Jul 3;1(6):e1400218. doi: 10.1126/sciadv.1400218. eCollection 2015 Jul.

26.

Natural variation in timing of stress-responsive gene expression predicts heterosis in intraspecific hybrids of Arabidopsis.

Miller M, Song Q, Shi X, Juenger TE, Chen ZJ.

Nat Commun. 2015 Jul 8;6:7453. doi: 10.1038/ncomms8453.

PMID:
26154604
27.

Exploiting Differential Gene Expression and Epistasis to Discover Candidate Genes for Drought-Associated QTLs in Arabidopsis thaliana.

Lovell JT, Mullen JL, Lowry DB, Awole K, Richards JH, Sen S, Verslues PE, Juenger TE, McKay JK.

Plant Cell. 2015 Apr;27(4):969-83. doi: 10.1105/tpc.15.00122. Epub 2015 Apr 14.

28.

Deeply diverged alleles in the Arabidopsis AREB1 transcription factor drive genome-wide differences in transcriptional response to the environment.

Des Marais DL, Skillern WD, Juenger TE.

Mol Biol Evol. 2015 Apr;32(4):956-69. doi: 10.1093/molbev/msu401. Epub 2014 Dec 23.

PMID:
25540452
29.

Direct and indirect selection on flowering time, water-use efficiency (WUE, δ (13)C), and WUE plasticity to drought in Arabidopsis thaliana.

Kenney AM, McKay JK, Richards JH, Juenger TE.

Ecol Evol. 2014 Dec;4(23):4505-21. doi: 10.1002/ece3.1270. Epub 2014 Nov 19.

30.

Extensive cross-environment fitness variation lies along few axes of genetic variation in the model alga, Chlamydomonas reinhardtii.

Malcom JW, Hernandez KM, Likos R, Wayne T, Leibold MA, Juenger TE.

New Phytol. 2015 Jan;205(2):841-51. doi: 10.1111/nph.13063. Epub 2014 Sep 29.

31.

The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii.

Lowry DB, Hernandez K, Taylor SH, Meyer E, Logan TL, Barry KW, Chapman JA, Rokhsar DS, Schmutz J, Juenger TE.

New Phytol. 2015 Jan;205(1):402-14. doi: 10.1111/nph.13027. Epub 2014 Sep 23.

32.

Integrating transcriptional, metabolomic, and physiological responses to drought stress and recovery in switchgrass (Panicum virgatum L.).

Meyer E, Aspinwall MJ, Lowry DB, Palacio-Mejía JD, Logan TL, Fay PA, Juenger TE.

BMC Genomics. 2014 Jun 26;15:527. doi: 10.1186/1471-2164-15-527.

33.

Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines.

Gordon SP, Priest H, Des Marais DL, Schackwitz W, Figueroa M, Martin J, Bragg JN, Tyler L, Lee CR, Bryant D, Wang W, Messing J, Manzaneda AJ, Barry K, Garvin DF, Budak H, Tuna M, Mitchell-Olds T, Pfender WF, Juenger TE, Mockler TC, Vogel JP.

Plant J. 2014 Aug;79(3):361-74. doi: 10.1111/tpj.12569. Epub 2014 Jul 15.

34.

Natural variation in abiotic stress responsive gene expression and local adaptation to climate in Arabidopsis thaliana.

Lasky JR, Des Marais DL, Lowry DB, Povolotskaya I, McKay JK, Richards JH, Keitt TH, Juenger TE.

Mol Biol Evol. 2014 Sep;31(9):2283-96. doi: 10.1093/molbev/msu170. Epub 2014 May 21.

35.

Adaptations between ecotypes and along environmental gradients in Panicum virgatum.

Lowry DB, Behrman KD, Grabowski P, Morris GP, Kiniry JR, Juenger TE.

Am Nat. 2014 May;183(5):682-92. doi: 10.1086/675760. Epub 2014 Mar 28.

PMID:
24739200
36.

Variation in MPK12 affects water use efficiency in Arabidopsis and reveals a pleiotropic link between guard cell size and ABA response.

Des Marais DL, Auchincloss LC, Sukamtoh E, McKay JK, Logan T, Richards JH, Juenger TE.

Proc Natl Acad Sci U S A. 2014 Feb 18;111(7):2836-41. doi: 10.1073/pnas.1321429111. Epub 2014 Feb 3.

37.

Genome-wide association mapping combined with reverse genetics identifies new effectors of low water potential-induced proline accumulation in Arabidopsis.

Verslues PE, Lasky JR, Juenger TE, Liu TW, Kumar MN.

Plant Physiol. 2014 Jan;164(1):144-59. doi: 10.1104/pp.113.224014. Epub 2013 Nov 11.

38.

Development of a next-generation NIL library in Arabidopsis thaliana for dissecting complex traits.

Fletcher RS, Mullen JL, Yoder S, Bauerle WL, Reuning G, Sen S, Meyer E, Juenger TE, McKay JK.

BMC Genomics. 2013 Sep 25;14:655. doi: 10.1186/1471-2164-14-655.

39.

Expression quantitative trait locus mapping across water availability environments reveals contrasting associations with genomic features in Arabidopsis.

Lowry DB, Logan TL, Santuari L, Hardtke CS, Richards JH, DeRose-Wilson LJ, McKay JK, Sen S, Juenger TE.

Plant Cell. 2013 Sep;25(9):3266-79. doi: 10.1105/tpc.113.115352. Epub 2013 Sep 17.

40.

Evolution of a genetic incompatibility in the genus Xiphophorus.

Scarpino SV, Hunt PJ, Garcia-De-Leon FJ, Juenger TE, Schartl M, Kirkpatrick M.

Mol Biol Evol. 2013 Oct;30(10):2302-10. doi: 10.1093/molbev/mst127. Epub 2013 Jul 27.

PMID:
23894140
41.

The physiological basis for genetic variation in water use efficiency and carbon isotope composition in Arabidopsis thaliana.

Easlon HM, Nemali KS, Richards JH, Hanson DT, Juenger TE, McKay JK.

Photosynth Res. 2014 Feb;119(1-2):119-29. doi: 10.1007/s11120-013-9891-5. Epub 2013 Jul 28.

42.

Genotypic variation in traits linked to climate and aboveground productivity in a widespread C₄ grass: evidence for a functional trait syndrome.

Aspinwall MJ, Lowry DB, Taylor SH, Juenger TE, Hawkes CV, Johnson MV, Kiniry JR, Fay PA.

New Phytol. 2013 Sep;199(4):966-80. doi: 10.1111/nph.12341. Epub 2013 May 23.

43.

Pleiotropy of FRIGIDA enhances the potential for multivariate adaptation.

Lovell JT, Juenger TE, Michaels SD, Lasky JR, Platt A, Richards JH, Yu X, Easlon HM, Sen S, McKay JK.

Proc Biol Sci. 2013 May 22;280(1763):20131043. doi: 10.1098/rspb.2013.1043. Print 2013 Jul 22.

44.

Spatial forecasting of switchgrass productivity under current and future climate change scenarios.

Behrman KD, Kiniry JR, Winchell M, Juenger TE, Keitt TH.

Ecol Appl. 2013 Jan;23(1):73-85.

PMID:
23495637
45.

Natural variation and genetic constraints on drought tolerance.

Juenger TE.

Curr Opin Plant Biol. 2013 Jun;16(3):274-81. doi: 10.1016/j.pbi.2013.02.001. Epub 2013 Feb 22.

PMID:
23462639
46.

A population genetic transect of Panicum hallii (Poaceae).

Lowry DB, Purmal CT, Juenger TE.

Am J Bot. 2013 Mar;100(3):592-601. doi: 10.3732/ajb.1200379. Epub 2013 Feb 20.

47.

Gamete fertility and ovule number variation in selfed reciprocal F1 hybrid triploid plants are heritable and display epigenetic parent-of-origin effects.

Duszynska D, McKeown PC, Juenger TE, Pietraszewska-Bogiel A, Geelen D, Spillane C.

New Phytol. 2013 Apr;198(1):71-81. doi: 10.1111/nph.12147. Epub 2013 Jan 31.

48.

Characterizing genomic variation of Arabidopsis thaliana: the roles of geography and climate.

Lasky JR, Des Marais DL, McKay JK, Richards JH, Juenger TE, Keitt TH.

Mol Ecol. 2012 Nov;21(22):5512-29. doi: 10.1111/j.1365-294X.2012.05709.x. Epub 2012 Aug 1.

PMID:
22857709
49.

In Arabidopsis thaliana codon volatility scores reflect GC3 composition rather than selective pressure.

O'Connell MJ, Doyle AM, Juenger TE, Donoghue MT, Keshavaiah C, Tuteja R, Spillane C.

BMC Res Notes. 2012 Jul 17;5:359. doi: 10.1186/1756-0500-5-359.

50.

Natural variation in GL1 and its effects on trichome density in Arabidopsis thaliana.

Bloomer RH, Juenger TE, Symonds VV.

Mol Ecol. 2012 Jul;21(14):3501-15. doi: 10.1111/j.1365-294X.2012.05630.x. Epub 2012 May 24.

PMID:
22625421

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