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Genome-wide association study identifies SNP markers associated with mycelial growth at 15, 20 and 25 °C, mefenoxam resistance and mating type in Phytophthora infestans.

Ayala-Usma D, Danies G, Myers KL, Bond MO, Romero-Navarro JA, Judelson HS, Restrepo S, Fry W.

Phytopathology. 2019 Dec 12. doi: 10.1094/PHYTO-06-19-0206-R. [Epub ahead of print]


Phytophthora infestans Dihydroorotate Dehydrogenase Is a Potential Target for Chemical Control - A Comparison With the Enzyme From Solanum tuberosum.

Garavito MF, Narvaez-Ortiz HY, Pulido DC, Löffler M, Judelson HS, Restrepo S, Zimmermann BH.

Front Microbiol. 2019 Jun 28;10:1479. doi: 10.3389/fmicb.2019.01479. eCollection 2019.


Metabolic Model of the Phytophthora infestans-Tomato Interaction Reveals Metabolic Switches during Host Colonization.

Rodenburg SYA, Seidl MF, Judelson HS, Vu AL, Govers F, de Ridder D.

mBio. 2019 Jul 9;10(4). pii: e00454-19. doi: 10.1128/mBio.00454-19.


Niche-specific metabolic adaptation in biotrophic and necrotrophic oomycetes is manifested in differential use of nutrients, variation in gene content, and enzyme evolution.

Ah-Fong AMV, Kagda MS, Abrahamian M, Judelson HS.

PLoS Pathog. 2019 Apr 19;15(4):e1007729. doi: 10.1371/journal.ppat.1007729. eCollection 2019 Apr.


Phytophthora infestans Sporangia Produced in Artificial Media and Plant Lesions Have Subtly Divergent Transcription Profiles but Equivalent Infection Potential and Aggressiveness.

Leesutthiphonchai W, Judelson HS.

Mol Plant Microbe Interact. 2019 Sep;32(9):1077-1087. doi: 10.1094/MPMI-12-18-0349-TA. Epub 2019 Jul 30.


Defining Transgene Insertion Sites and Off-Target Effects of Homology-Based Gene Silencing Informs the Application of Functional Genomics Tools in Phytophthora infestans.

Vu AL, Leesutthiphonchai W, Ah-Fong AMV, Judelson HS.

Mol Plant Microbe Interact. 2019 Aug;32(8):915-927. doi: 10.1094/MPMI-09-18-0265-TA. Epub 2019 Jun 25.


Exchanges at the Plant-Oomycete Interface That Influence Disease.

Judelson HS, Ah-Fong AMV.

Plant Physiol. 2019 Apr;179(4):1198-1211. doi: 10.1104/pp.18.00979. Epub 2018 Dec 11. Review. No abstract available.


A MADS-box transcription factor regulates a central step in sporulation of the oomycete Phytophthora infestans.

Leesutthiphonchai W, Judelson HS.

Mol Microbiol. 2018 Nov;110(4):562-575. doi: 10.1111/mmi.14114. Epub 2018 Oct 22.


Illuminating Phytophthora Biology with Fluorescent Protein Tags.

Ah-Fong AMV, Kagda M, Judelson HS.

Methods Mol Biol. 2018;1848:119-129. doi: 10.1007/978-1-4939-8724-5_10.


Phosphagen kinase function in flagellated spores of the oomycete Phytophthora infestans integrates transcriptional regulation, metabolic dynamics and protein retargeting.

Kagda MS, Vu AL, Ah-Fong AMV, Judelson HS.

Mol Microbiol. 2018 Oct;110(2):296-308. doi: 10.1111/mmi.14108. Epub 2018 Oct 3.


How Does Phytophthora infestans Evade Control Efforts? Modern Insight Into the Late Blight Disease.

Leesutthiphonchai W, Vu AL, Ah-Fong AMV, Judelson HS.

Phytopathology. 2018 Aug;108(8):916-924. doi: 10.1094/PHYTO-04-18-0130-IA. Epub 2018 Jul 6. Review.


Novo&Stitch: accurate reconciliation of genome assemblies via optical maps.

Pan W, Wanamaker SI, Ah-Fong AMV, Judelson HS, Lonardi S.

Bioinformatics. 2018 Jul 1;34(13):i43-i51. doi: 10.1093/bioinformatics/bty255.


Transcriptomic and proteomic analysis reveals wall-associated and glucan-degrading proteins with potential roles in Phytophthora infestans sexual spore development.

Niu X, Ah-Fong AMV, Lopez LA, Judelson HS.

PLoS One. 2018 Jun 13;13(6):e0198186. doi: 10.1371/journal.pone.0198186. eCollection 2018.


Rethinking the evolution of eukaryotic metabolism: novel cellular partitioning of enzymes in stramenopiles links serine biosynthesis to glycolysis in mitochondria.

Abrahamian M, Kagda M, Ah-Fong AMV, Judelson HS.

BMC Evol Biol. 2017 Dec 4;17(1):241. doi: 10.1186/s12862-017-1087-8.


Metabolic Diversity and Novelties in the Oomycetes.

Judelson HS.

Annu Rev Microbiol. 2017 Sep 8;71:21-39. doi: 10.1146/annurev-micro-090816-093609. Epub 2017 May 15. Review.


Gene Expression and Silencing Studies in Phytophthora infestans Reveal Infection-Specific Nutrient Transporters and a Role for the Nitrate Reductase Pathway in Plant Pathogenesis.

Abrahamian M, Ah-Fong AM, Davis C, Andreeva K, Judelson HS.

PLoS Pathog. 2016 Dec 9;12(12):e1006097. doi: 10.1371/journal.ppat.1006097. eCollection 2016 Dec.


Genetic Variation within Clonal Lineages of Phytophthora infestans Revealed through Genotyping-By-Sequencing, and Implications for Late Blight Epidemiology.

Hansen ZR, Everts KL, Fry WE, Gevens AJ, Grünwald NJ, Gugino BK, Johnson DA, Johnson SB, Judelson HS, Knaus BJ, McGrath MT, Myers KL, Ristaino JB, Roberts PD, Secor GA, Smart CD.

PLoS One. 2016 Nov 3;11(11):e0165690. doi: 10.1371/journal.pone.0165690. eCollection 2016.


SNP-Based Differentiation of Phytophthora infestans Clonal Lineages Using Locked Nucleic Acid Probes and High-Resolution Melt Analysis.

Hansen ZR, Knaus BJ, Tabima JF, Press CM, Judelson HS, Grünwald NJ, Smart CD.

Plant Dis. 2016 Jul;100(7):1297-1306. doi: 10.1094/PDIS-11-15-1247-RE. Epub 2016 Mar 10.


Loop-mediated isothermal amplification for detection of the tomato and potato late blight pathogen, Phytophthora infestans.

Hansen ZR, Knaus BJ, Tabima JF, Press CM, Judelson HS, Grünwald NJ, Smart CD.

J Appl Microbiol. 2016 Apr;120(4):1010-20. doi: 10.1111/jam.13079. Epub 2016 Mar 7.


Comparisons of Ribosomal Protein Gene Promoters Indicate Superiority of Heterologous Regulatory Sequences for Expressing Transgenes in Phytophthora infestans.

Poidevin L, Andreeva K, Khachatoorian C, Judelson HS.

PLoS One. 2015 Dec 30;10(12):e0145612. doi: 10.1371/journal.pone.0145612. eCollection 2015.


Metalaxyl Resistance in Phytophthora infestans: Assessing Role of RPA190 Gene and Diversity Within Clonal Lineages.

Matson ME, Small IM, Fry WE, Judelson HS.

Phytopathology. 2015 Dec;105(12):1594-600. doi: 10.1094/PHYTO-05-15-0129-R. Epub 2015 Nov 9.


Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora.

Sharma R, Xia X, Cano LM, Evangelisti E, Kemen E, Judelson H, Oome S, Sambles C, van den Hoogen DJ, Kitner M, Klein J, Meijer HJ, Spring O, Win J, Zipper R, Bode HB, Govers F, Kamoun S, Schornack S, Studholme DJ, Van den Ackerveken G, Thines M.

BMC Genomics. 2015 Oct 5;16:741. doi: 10.1186/s12864-015-1904-7.


Five Reasons to Consider Phytophthora infestans a Reemerging Pathogen.

Fry WE, Birch PR, Judelson HS, Grünwald NJ, Danies G, Everts KL, Gevens AJ, Gugino BK, Johnson DA, Johnson SB, McGrath MT, Myers KL, Ristaino JB, Roberts PD, Secor G, Smart CD.

Phytopathology. 2015 Jul;105(7):966-81. doi: 10.1094/PHYTO-01-15-0005-FI. Epub 2015 Jun 26. Review.


The Top 10 oomycete pathogens in molecular plant pathology.

Kamoun S, Furzer O, Jones JD, Judelson HS, Ali GS, Dalio RJ, Roy SG, Schena L, Zambounis A, Panabières F, Cahill D, Ruocco M, Figueiredo A, Chen XR, Hulvey J, Stam R, Lamour K, Gijzen M, Tyler BM, Grünwald NJ, Mukhtar MS, Tomé DF, Tör M, Van Den Ackerveken G, McDowell J, Daayf F, Fry WE, Lindqvist-Kreuze H, Meijer HJ, Petre B, Ristaino J, Yoshida K, Birch PR, Govers F.

Mol Plant Pathol. 2015 May;16(4):413-34. doi: 10.1111/mpp.12190. Epub 2014 Dec 11. Review.


Myb transcription factors and light regulate sporulation in the oomycete Phytophthora infestans.

Xiang Q, Judelson HS.

PLoS One. 2014 Apr 4;9(4):e92086. doi: 10.1371/journal.pone.0092086. eCollection 2014.


bZIP transcription factors in the oomycete phytophthora infestans with novel DNA-binding domains are involved in defense against oxidative stress.

Gamboa-Meléndez H, Huerta AI, Judelson HS.

Eukaryot Cell. 2013 Oct;12(10):1403-12. doi: 10.1128/EC.00141-13. Epub 2013 Aug 23.


Genome-wide prediction and functional validation of promoter motifs regulating gene expression in spore and infection stages of Phytophthora infestans.

Roy S, Kagda M, Judelson HS.

PLoS Pathog. 2013 Mar;9(3):e1003182. doi: 10.1371/journal.ppat.1003182. Epub 2013 Mar 14.


The 2009 Late Blight Pandemic in the Eastern United States - Causes and Results.

Fry WE, McGrath MT, Seaman A, Zitter TA, McLeod A, Danies G, Small IM, Myers K, Everts K, Gevens AJ, Gugino BK, Johnson SB, Judelson H, Ristaino J, Roberts P, Secor G, Seebold K Jr, Snover-Clift K, Wyenandt A, Grünwald NJ, Smart CD.

Plant Dis. 2013 Mar;97(3):296-306. doi: 10.1094/PDIS-08-12-0791-FE.


Novel core promoter elements in the oomycete pathogen Phytophthora infestans and their influence on expression detected by genome-wide analysis.

Roy S, Poidevin L, Jiang T, Judelson HS.

BMC Genomics. 2013 Feb 16;14:106. doi: 10.1186/1471-2164-14-106.


Oomycete pathogens encode RNA silencing suppressors.

Qiao Y, Liu L, Xiong Q, Flores C, Wong J, Shi J, Wang X, Liu X, Xiang Q, Jiang S, Zhang F, Wang Y, Judelson HS, Chen X, Ma W.

Nat Genet. 2013 Mar;45(3):330-3. doi: 10.1038/ng.2525. Epub 2013 Feb 3.


Decay of genes encoding the oomycete flagellar proteome in the downy mildew Hyaloperonospora arabidopsidis.

Judelson HS, Shrivastava J, Manson J.

PLoS One. 2012;7(10):e47624. doi: 10.1371/journal.pone.0047624. Epub 2012 Oct 15.


Dynamics and innovations within oomycete genomes: insights into biology, pathology, and evolution.

Judelson HS.

Eukaryot Cell. 2012 Nov;11(11):1304-12. doi: 10.1128/EC.00155-12. Epub 2012 Aug 24. Review.


Vectors for fluorescent protein tagging in Phytophthora: tools for functional genomics and cell biology.

Ah-Fong AM, Judelson HS.

Fungal Biol. 2011 Sep;115(9):882-90. doi: 10.1016/j.funbio.2011.07.001. Epub 2011 Jul 18.


Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome.

Baxter L, Tripathy S, Ishaque N, Boot N, Cabral A, Kemen E, Thines M, Ah-Fong A, Anderson R, Badejoko W, Bittner-Eddy P, Boore JL, Chibucos MC, Coates M, Dehal P, Delehaunty K, Dong S, Downton P, Dumas B, Fabro G, Fronick C, Fuerstenberg SI, Fulton L, Gaulin E, Govers F, Hughes L, Humphray S, Jiang RHY, Judelson H, Kamoun S, Kyung K, Meijer H, Minx P, Morris P, Nelson J, Phuntumart V, Qutob D, Rehmany A, Rougon-Cardoso A, Ryden P, Torto-Alalibo T, Studholme D, Wang Y, Win J, Wood J, Clifton SW, Rogers J, Van den Ackerveken G, Jones JDG, McDowell JM, Beynon J, Tyler BM.

Science. 2010 Dec 10;330(6010):1549-1551. doi: 10.1126/science.1195203.


The kinome of Phytophthora infestans reveals oomycete-specific innovations and links to other taxonomic groups.

Judelson HS, Ah-Fong AM.

BMC Genomics. 2010 Dec 9;11:700. doi: 10.1186/1471-2164-11-700.


An RNA symbiont enhances heat tolerance and secondary homothallism in the oomycete Phytophthora infestans.

Judelson HS, Ah-Fong AM, Fabritius AL.

Microbiology. 2010 Jul;156(Pt 7):2026-34. doi: 10.1099/mic.0.039305-0. Epub 2010 Apr 1.


Myb transcription factors in the oomycete Phytophthora with novel diversified DNA-binding domains and developmental stage-specific expression.

Xiang Q, Judelson HS.

Gene. 2010 Mar 15;453(1-2):1-8. doi: 10.1016/j.gene.2009.12.006. Epub 2010 Jan 7.


Metabolic adaptation of Phytophthora infestans during growth on leaves, tubers and artificial media.

Judelson HS, Tani S, Narayan RD.

Mol Plant Pathol. 2009 Nov;10(6):843-55. doi: 10.1111/j.1364-3703.2009.00570.x.


Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans.

Haas BJ, Kamoun S, Zody MC, Jiang RH, Handsaker RE, Cano LM, Grabherr M, Kodira CD, Raffaele S, Torto-Alalibo T, Bozkurt TO, Ah-Fong AM, Alvarado L, Anderson VL, Armstrong MR, Avrova A, Baxter L, Beynon J, Boevink PC, Bollmann SR, Bos JI, Bulone V, Cai G, Cakir C, Carrington JC, Chawner M, Conti L, Costanzo S, Ewan R, Fahlgren N, Fischbach MA, Fugelstad J, Gilroy EM, Gnerre S, Green PJ, Grenville-Briggs LJ, Griffith J, Grünwald NJ, Horn K, Horner NR, Hu CH, Huitema E, Jeong DH, Jones AM, Jones JD, Jones RW, Karlsson EK, Kunjeti SG, Lamour K, Liu Z, Ma L, Maclean D, Chibucos MC, McDonald H, McWalters J, Meijer HJ, Morgan W, Morris PF, Munro CA, O'Neill K, Ospina-Giraldo M, Pinzón A, Pritchard L, Ramsahoye B, Ren Q, Restrepo S, Roy S, Sadanandom A, Savidor A, Schornack S, Schwartz DC, Schumann UD, Schwessinger B, Seyer L, Sharpe T, Silvar C, Song J, Studholme DJ, Sykes S, Thines M, van de Vondervoort PJ, Phuntumart V, Wawra S, Weide R, Win J, Young C, Zhou S, Fry W, Meyers BC, van West P, Ristaino J, Govers F, Birch PR, Whisson SC, Judelson HS, Nusbaum C.

Nature. 2009 Sep 17;461(7262):393-8. doi: 10.1038/nature08358. Epub 2009 Sep 9.


A motif within a complex promoter from the oomycete Phytophthora infestans determines transcription during an intermediate stage of sporulation.

Xiang Q, Kim KS, Roy S, Judelson HS.

Fungal Genet Biol. 2009 May;46(5):400-9. doi: 10.1016/j.fgb.2009.02.006. Epub 2009 Feb 27.


Gene expression changes during asexual sporulation by the late blight agent Phytophthora infestans occur in discrete temporal stages.

Judelson HS, Narayan RD, Ah-Fong AM, Kim KS.

Mol Genet Genomics. 2009 Feb;281(2):193-206. doi: 10.1007/s00438-008-0407-5. Epub 2008 Dec 3.


Genetic Analysis of Metalaxyl Insensitivity Loci in Phytophthora infestans Using Linked DNA Markers.

Fabritius AL, Shattock RC, Judelson HS.

Phytopathology. 1997 Oct;87(10):1034-40. doi: 10.1094/PHYTO.1997.87.10.1034.


Multiple Loci Determining Insensitivity to Phenylamide Fungicides in Phytophthora infestans.

Judelson HS, Roberts S.

Phytopathology. 1999 Sep;89(9):754-60. doi: 10.1094/PHYTO.1999.89.9.754.


Enhanced Polymerase Chain Reaction Methods for Detecting and Quantifying Phytophthora infestans in Plants.

Judelson HS, Tooley PW.

Phytopathology. 2000 Oct;90(10):1112-9. doi: 10.1094/PHYTO.2000.90.10.1112.


Optimization of transgene-mediated silencing in Phytophthora infestans and its association with small-interfering RNAs.

Ah-Fong AM, Bormann-Chung CA, Judelson HS.

Fungal Genet Biol. 2008 Aug;45(8):1197-205. doi: 10.1016/j.fgb.2008.05.009. Epub 2008 May 29.


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