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Persuasive Quick-Writing about Text: Intervention for Students with Learning Disabilities.

Ciullo S, Mason LH, Judd L.

Behav Modif. 2019 Oct 18:145445519882894. doi: 10.1177/0145445519882894. [Epub ahead of print]


Complete Genome Sequence of A388, an Antibiotic-Resistant Acinetobacter baumannii Global Clone 1 Isolate from Greece.

Hamidian M, Wick RR, Judd LM, Holt KE, Hall RM.

Microbiol Resour Announc. 2019 Oct 10;8(41). pii: e00971-19. doi: 10.1128/MRA.00971-19.


Insights from the revised complete genome sequences of Acinetobacter baumannii strains AB307-0294 and ACICU belonging to global clones 1 and 2.

Hamidian M, Wick RR, Hartstein RM, Judd LM, Holt KE, Hall RM.

Microb Genom. 2019 Oct;5(10). doi: 10.1099/mgen.0.000298.


Z/I1 Hybrid Virulence Plasmids Carrying Antimicrobial Resistance genes in S. Typhimurium from Australian Food Animal Production.

Wyrsch ER, Hawkey J, Judd LM, Haites R, Holt KE, Djordjevic SP, Billman-Jacobe H.

Microorganisms. 2019 Aug 29;7(9). pii: E299. doi: 10.3390/microorganisms7090299.


Performance of neural network basecalling tools for Oxford Nanopore sequencing.

Wick RR, Judd LM, Holt KE.

Genome Biol. 2019 Jun 24;20(1):129. doi: 10.1186/s13059-019-1727-y.


Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae.

Wyres KL, Wick RR, Judd LM, Froumine R, Tokolyi A, Gorrie CL, Lam MMC, Duchêne S, Jenney A, Holt KE.

PLoS Genet. 2019 Apr 15;15(4):e1008114. doi: 10.1371/journal.pgen.1008114. eCollection 2019 Apr.


Convergence of virulence and MDR in a single plasmid vector in MDR Klebsiella pneumoniae ST15.

Lam MMC, Wyres KL, Wick RR, Judd LM, Fostervold A, Holt KE, Löhr IH.

J Antimicrob Chemother. 2019 May 1;74(5):1218-1222. doi: 10.1093/jac/dkz028.


Prevalence of vitamin K deficiency in older people with hip fracture.

Bultynck C, Munim N, Harrington DJ, Judd L, Ataklte F, Shah Z, Dockery F.

Acta Clin Belg. 2019 Jan 8:1-5. doi: 10.1080/17843286.2018.1564174. [Epub ahead of print]


Small IncQ1 and Col-Like Plasmids Harboring bla KPC-2 and Non-Tn4401 Elements (NTEKPC-IId) in High-Risk Lineages of Klebsiella pneumoniae CG258.

Cerdeira LT, Lam MMC, Wyres KL, Wick RR, Judd LM, Lopes R, Ribas RM, Morais MM, Holt KE, Lincopan N.

Antimicrob Agents Chemother. 2019 Feb 26;63(3). pii: e02140-18. doi: 10.1128/AAC.02140-18. Print 2019 Mar. No abstract available.


Overexpression of IL-11 promotes premalignant gastric epithelial hyperplasia in isolation from germline gp130-JAK-STAT driver mutations.

Buzzelli JN, O'Connor L, Scurr M, Chung Nien Chin S, Catubig A, Ng GZ, Oshima M, Oshima H, Giraud AS, Sutton P, Judd LM, Menheniott TR.

Am J Physiol Gastrointest Liver Physiol. 2019 Feb 1;316(2):G251-G262. doi: 10.1152/ajpgi.00304.2018. Epub 2018 Dec 6.


Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307.

Wyres KL, Hawkey J, Hetland MAK, Fostervold A, Wick RR, Judd LM, Hamidian M, Howden BP, Löhr IH, Holt KE.

J Antimicrob Chemother. 2019 Mar 1;74(3):577-581. doi: 10.1093/jac/dky492.


Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks.

Wick RR, Judd LM, Holt KE.

PLoS Comput Biol. 2018 Nov 20;14(11):e1006583. doi: 10.1371/journal.pcbi.1006583. eCollection 2018 Nov.


Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae.

Lam MMC, Wyres KL, Judd LM, Wick RR, Jenney A, Brisse S, Holt KE.

Genome Med. 2018 Oct 29;10(1):77. doi: 10.1186/s13073-018-0587-5.


Airway Microbiota Dynamics Uncover a Critical Window for Interplay of Pathogenic Bacteria and Allergy in Childhood Respiratory Disease.

Teo SM, Tang HHF, Mok D, Judd LM, Watts SC, Pham K, Holt BJ, Kusel M, Serralha M, Troy N, Bochkov YA, Grindle K, Lemanske RF Jr, Johnston SL, Gern JE, Sly PD, Holt PG, Holt KE, Inouye M.

Cell Host Microbe. 2018 Sep 12;24(3):341-352.e5. doi: 10.1016/j.chom.2018.08.005.


Microbiome profiling reveals gut dysbiosis in a transgenic mouse model of Huntington's disease.

Kong G, Cao KL, Judd LM, Li S, Renoir T, Hannan AJ.

Neurobiol Dis. 2018 Sep 5:104268. doi: 10.1016/j.nbd.2018.09.001. [Epub ahead of print]


Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination.

Lam MMC, Wyres KL, Duchêne S, Wick RR, Judd LM, Gan YH, Hoh CH, Archuleta S, Molton JS, Kalimuddin S, Koh TH, Passet V, Brisse S, Holt KE.

Nat Commun. 2018 Jul 13;9(1):2703. doi: 10.1038/s41467-018-05114-7.


Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations.

Lam MMC, Wick RR, Wyres KL, Gorrie CL, Judd LM, Jenney AWJ, Brisse S, Holt KE.

Microb Genom. 2018 Sep;4(9). doi: 10.1099/mgen.0.000196. Epub 2018 Jul 9.


Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection.

Hawkey J, Ascher DB, Judd LM, Wick RR, Kostoulias X, Cleland H, Spelman DW, Padiglione A, Peleg AY, Holt KE.

Microb Genom. 2018 Mar;4(3). doi: 10.1099/mgen.0.000165. Epub 2018 Mar 16.


Test of conditions that affect in vitro production of volatile fatty acids and gases.

Judd LM, Kohn RA.

J Anim Sci. 2018 Mar 6;96(2):694-704. doi: 10.1093/jas/skx082.


Determinants of hand dermatitis, urticaria and loss of skin barrier function in professional cleaners in New Zealand.

Douwes J, Slater T, Shanthakumar M, McLean D, Firestone RT, Judd L, Pearce N.

Int J Occup Environ Health. 2017 Apr;23(2):110-119. doi: 10.1080/10773525.2018.1427307. Epub 2018 Jan 23.


Antimicrobial-Resistant Klebsiella pneumoniae Carriage and Infection in Specialized Geriatric Care Wards Linked to Acquisition in the Referring Hospital.

Gorrie CL, Mirceta M, Wick RR, Judd LM, Wyres KL, Thomson NR, Strugnell RA, Pratt NF, Garlick JS, Watson KM, Hunter PC, McGloughlin SA, Spelman DW, Jenney AWJ, Holt KE.

Clin Infect Dis. 2018 Jul 2;67(2):161-170. doi: 10.1093/cid/ciy027.


The Dawn of Geostationary Air Quality Monitoring: Case Studies from Seoul and Los Angeles.

Judd L, Al-Saadi J, Valin L, Pierce RB, Yang K, Janz S, Kowalewski M, Szykman J, Tiefengraber M, Mueller M.

Front Environ Sci. 2018;6. doi: 10.3389/fenvs.2018.00085.


Completing bacterial genome assemblies with multiplex MinION sequencing.

Wick RR, Judd LM, Gorrie CL, Holt KE.

Microb Genom. 2017 Sep 14;3(10):e000132. doi: 10.1099/mgen.0.000132. eCollection 2017 Oct.


Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Wick RR, Judd LM, Gorrie CL, Holt KE.

PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.


Protease-activated Receptor 1 Plays a Proinflammatory Role in Colitis by Promoting Th17-related Immunity.

Saeed MA, Ng GZ, Däbritz J, Wagner J, Judd L, Han JX, Dhar P, Kirkwood CD, Sutton P.

Inflamm Bowel Dis. 2017 Apr;23(4):593-602. doi: 10.1097/MIB.0000000000001045.


A Brief Clinical Tool to Estimate Individual Patients' Risk of Depressive Relapse Following Remission: Proof of Concept.

Judd LL, Schettler PJ, Rush AJ.

Am J Psychiatry. 2016 Nov 1;173(11):1140-1146. Epub 2016 Jul 15.


Loss of gastrokine-2 drives premalignant gastric inflammation and tumor progression.

Menheniott TR, O'Connor L, Chionh YT, Däbritz J, Scurr M, Rollo BN, Ng GZ, Jacobs S, Catubig A, Kurklu B, Mercer S, Minamoto T, Ong DE, Ferrero RL, Fox JG, Wang TC, Sutton P, Judd LM, Giraud AS.

J Clin Invest. 2016 Apr 1;126(4):1383-400. doi: 10.1172/JCI82655. Epub 2016 Mar 14.


Altered gp130 signalling ameliorates experimental colitis via myeloid cell-specific STAT3 activation and myeloid-derived suppressor cells.

Däbritz J, Judd LM, Chalinor HV, Menheniott TR, Giraud AS.

Sci Rep. 2016 Feb 5;6:20584. doi: 10.1038/srep20584.


RUNX3 methylation and anti-tumor immunity.

Menheniott TR, Judd LM, Giraud AS.

Oncoscience. 2015 Sep 12;2(10):789-90. eCollection 2015. No abstract available.


Efficient, non-toxic anion transport by synthetic carriers in cells and epithelia.

Li H, Valkenier H, Judd LW, Brotherhood PR, Hussain S, Cooper JA, Jurček O, Sparkes HA, Sheppard DN, Davis AP.

Nat Chem. 2016 Jan;8(1):24-32. doi: 10.1038/nchem.2384. Epub 2015 Nov 2.


A New Empirical Definition of Major Depressive Episode Recovery and Its Positive Impact on Future Course of Illness.

Judd LL, Schettler PJ, Rush AJ, Coryell WH, Fiedorowicz JG, Solomon DA.

J Clin Psychiatry. 2016 Aug;77(8):1065-73. doi: 10.4088/JCP.15m09918.


Elevated IL-33 expression is associated with pediatric eosinophilic esophagitis, and exogenous IL-33 promotes eosinophilic esophagitis development in mice.

Judd LM, Heine RG, Menheniott TR, Buzzelli J, O'Brien-Simpson N, Pavlic D, O'Connor L, Al Gazali K, Hamilton O, Scurr M, Collison AM, Mattes J, Allen KJ, Giraud AS.

Am J Physiol Gastrointest Liver Physiol. 2016 Jan 1;310(1):G13-25. doi: 10.1152/ajpgi.00290.2015. Epub 2015 Oct 29.


STAT3: a critical component in the response to Helicobacter pylori infection.

Menheniott TR, Judd LM, Giraud AS.

Cell Microbiol. 2015 Nov;17(11):1570-82. doi: 10.1111/cmi.12518. Epub 2015 Oct 8. Review.


The MUC1 mucin protects against Helicobacter pylori pathogenesis in mice by regulation of the NLRP3 inflammasome.

Ng GZ, Menheniott TR, Every AL, Stent A, Judd LM, Chionh YT, Dhar P, Komen JC, Giraud AS, Wang TC, McGuckin MA, Sutton P.

Gut. 2016 Jul;65(7):1087-99. doi: 10.1136/gutjnl-2014-307175. Epub 2015 Apr 8.


IL33 Is a Stomach Alarmin That Initiates a Skewed Th2 Response to Injury and Infection.

Buzzelli JN, Chalinor HV, Pavlic DI, Sutton P, Menheniott TR, Giraud AS, Judd LM.

Cell Mol Gastroenterol Hepatol. 2015 Jan 3;1(2):203-221.e3. doi: 10.1016/j.jcmgh.2014.12.003. eCollection 2015 Mar.


Advancements in Root Growth Measurement Technologies and Observation Capabilities for Container-Grown Plants.

Judd LA, Jackson BE, Fonteno WC.

Plants (Basel). 2015 Jul 3;4(3):369-92. doi: 10.3390/plants4030369. Review.


IL-1RT1 signaling antagonizes IL-11 induced STAT3 dependent cardiac and antral stomach tumor development through myeloid cell enrichment.

Buzzelli JN, Pavlic DI, Chalinor HV, O'Connor L, Menheniott TR, Giraud AS, Judd LM.

Oncotarget. 2015 Jan 20;6(2):679-95.


TFF2 deficiency exacerbates weight loss and alters immune cell and cytokine profiles in DSS colitis, and this cannot be rescued by wild-type bone marrow.

Judd LM, Chalinor HV, Walduck A, Pavlic DI, Däbritz J, Dubeykovskaya Z, Wang TC, Menheniott TR, Giraud AS.

Am J Physiol Gastrointest Liver Physiol. 2015 Jan 1;308(1):G12-24. doi: 10.1152/ajpgi.00172.2014. Epub 2014 Oct 16.


Adverse consequences of glucocorticoid medication: psychological, cognitive, and behavioral effects.

Judd LL, Schettler PJ, Brown ES, Wolkowitz OM, Sternberg EM, Bender BG, Bulloch K, Cidlowski JA, de Kloet ER, Fardet L, Joëls M, Leung DY, McEwen BS, Roozendaal B, Van Rossum EF, Ahn J, Brown DW, Plitt A, Singh G.

Am J Psychiatry. 2014 Oct;171(10):1045-51. doi: 10.1176/appi.ajp.2014.13091264. Erratum in: Am J Psychiatry. 2014 Nov 1;171(11):1224.


Preorganized bis-thioureas as powerful anion carriers: chloride transport by single molecules in large unilamellar vesicles.

Valkenier H, Judd LW, Li H, Hussain S, Sheppard DN, Davis AP.

J Am Chem Soc. 2014 Sep 3;136(35):12507-12. doi: 10.1021/ja507551z. Epub 2014 Aug 19.


Lineage-specific RUNX3 hypomethylation marks the preneoplastic immune component of gastric cancer.

Kurklu B, Whitehead RH, Ong EK, Minamoto T, Fox JG, Mann JR, Judd LM, Giraud AS, Menheniott TR.

Oncogene. 2015 May 28;34(22):2856-66. doi: 10.1038/onc.2014.233. Epub 2014 Aug 4.


Inhibition of the JAK2/STAT3 pathway reduces gastric cancer growth in vitro and in vivo.

Judd LM, Menheniott TR, Ling H, Jackson CB, Howlett M, Kalantzis A, Priebe W, Giraud AS.

PLoS One. 2014 May 7;9(5):e95993. doi: 10.1371/journal.pone.0095993. eCollection 2014.


The prevalence and severity of depressive symptoms along the spectrum of unipolar depressive disorders: a post hoc analysis.

Rakofsky JJ, Schettler PJ, Kinkead BL, Frank E, Judd LL, Kupfer DJ, Rush AJ, Thase ME, Yonkers KA, Rapaport MH.

J Clin Psychiatry. 2013 Nov;74(11):1084-91. doi: 10.4088/JCP.12m08194.


The challenge of connecting the dots in the B.R.A.I.N.

Devor A, Bandettini PA, Boas DA, Bower JM, Buxton RB, Cohen LB, Dale AM, Einevoll GT, Fox PT, Franceschini MA, Friston KJ, Fujimoto JG, Geyer MA, Greenberg JH, Halgren E, Hämäläinen MS, Helmchen F, Hyman BT, Jasanoff A, Jernigan TL, Judd LL, Kim SG, Kleinfeld D, Kopell NJ, Kutas M, Kwong KK, Larkum ME, Lo EH, Magistretti PJ, Mandeville JB, Masliah E, Mitra PP, Mobley WC, Moskowitz MA, Nimmerjahn A, Reynolds JH, Rosen BR, Salzberg BM, Schaffer CB, Silva GA, So PT, Spitzer NC, Tootell RB, Van Essen DC, Vanduffel W, Vinogradov SA, Wald LL, Wang LV, Weber B, Yodh AG.

Neuron. 2013 Oct 16;80(2):270-4. doi: 10.1016/j.neuron.2013.09.008.


Overt irritability/anger in unipolar major depressive episodes: past and current characteristics and implications for long-term course.

Judd LL, Schettler PJ, Coryell W, Akiskal HS, Fiedorowicz JG.

JAMA Psychiatry. 2013 Nov;70(11):1171-80. doi: 10.1001/jamapsychiatry.2013.1957.


Fluoxetine increases suicide ideation less than placebo during treatment of adults with minor depressive disorder.

Garlow SJ, Kinkead B, Thase ME, Judd LL, Rush AJ, Yonkers KA, Kupfer DJ, Frank E, Schettler PJ, Rapaport MH.

J Psychiatr Res. 2013 Sep;47(9):1199-203. doi: 10.1016/j.jpsychires.2013.05.025. Epub 2013 Jun 17.


Intravenous ketamine for the treatment of refractory status epilepticus: a retrospective multicenter study.

Gaspard N, Foreman B, Judd LM, Brenton JN, Nathan BR, McCoy BM, Al-Otaibi A, Kilbride R, Fernández IS, Mendoza L, Samuel S, Zakaria A, Kalamangalam GP, Legros B, Szaflarski JP, Loddenkemper T, Hahn CD, Goodkin HP, Claassen J, Hirsch LJ, Laroche SM.

Epilepsia. 2013 Aug;54(8):1498-503. doi: 10.1111/epi.12247. Epub 2013 Jun 12.


A novel nutrition medicine education model: the Boston University experience.

Lenders C, Gorman K, Milch H, Decker A, Harvey N, Stanfield L, Lim-Miller A, Salge-Blake J, Judd L, Levine S.

Adv Nutr. 2013 Jan 1;4(1):1-7. doi: 10.3945/an.112.002766. Review.


Targeting STAT3 in gastric cancer.

Giraud AS, Menheniott TR, Judd LM.

Expert Opin Ther Targets. 2012 Sep;16(9):889-901. doi: 10.1517/14728222.2012.709238. Epub 2012 Jul 26. Review.


Dimensional paradigm of the long-term course of unipolar major depressive disorder.

Judd LL.

Depress Anxiety. 2012 Mar;29(3):167-71. doi: 10.1002/da.21934. Review. No abstract available.


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