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Items: 1 to 50 of 107

1.

Ovarian tissue cryopreservation: prospective randomized study on thawed ovarian tissue viability to estimate the maximum possible delivery time of tissue samples.

Jin F, Ruan X, Juan D, Li Y, Cheng J, Wang H, Mueck AO.

Gynecol Endocrinol. 2019 Jul;35(7):591-594. doi: 10.1080/09513590.2019.1572736. Epub 2019 Feb 19.

PMID:
30777495
2.

Intronic CNVs and gene expression variation in human populations.

Rigau M, Juan D, Valencia A, Rico D.

PLoS Genet. 2019 Jan 24;15(1):e1007902. doi: 10.1371/journal.pgen.1007902. eCollection 2019 Jan.

3.

A rare case report of fungal esophagitis combined with giant gastric ulcer in an immunocompetent patient.

Liang M, Liwen Z, Juan D, Yun Z, Yanbo D, Jianping C.

Medicine (Baltimore). 2019 Jan;98(3):e14158. doi: 10.1097/MD.0000000000014158.

4.

Selective single molecule sequencing and assembly of a human Y chromosome of African origin.

Kuderna LFK, Lizano E, Julià E, Gomez-Garrido J, Serres-Armero A, Kuhlwilm M, Alandes RA, Alvarez-Estape M, Juan D, Simon H, Alioto T, Gut M, Gut I, Schierup MH, Fornas O, Marques-Bonet T.

Nat Commun. 2019 Jan 2;10(1):4. doi: 10.1038/s41467-018-07885-5.

5.

A case report of endoscopic therapy for radiation-induced hemorrhagic gastritis in patient with recurrent hepatocellular carcinoma.

Liang M, Liwen Z, Juan D, Yun Z, Yanbo D, Jianping C.

Medicine (Baltimore). 2018 Dec;97(51):e13535. doi: 10.1097/MD.0000000000013535.

6.

Spatiotemporal transcriptomic divergence across human and macaque brain development.

Zhu Y, Sousa AMM, Gao T, Skarica M, Li M, Santpere G, Esteller-Cucala P, Juan D, Ferrández-Peral L, Gulden FO, Yang M, Miller DJ, Marques-Bonet T, Imamura Kawasawa Y, Zhao H, Sestan N.

Science. 2018 Dec 14;362(6420). pii: eaat8077. doi: 10.1126/science.aat8077. Epub 2018 Dec 13.

PMID:
30545855
7.

Corrigendum: Loose ends: almost one in five human genes still have unresolved coding status.

Abascal F, Juan D, Jungreis I, Kellis M, Martinez L, Rigau M, Rodriguez JM, Vazquez J, Tress ML.

Nucleic Acids Res. 2018 Dec 14;46(22):12194. doi: 10.1093/nar/gky1146. No abstract available.

8.

Loose ends: almost one in five human genes still have unresolved coding status.

Abascal F, Juan D, Jungreis I, Kellis M, Martinez L, Rigau M, Rodriguez JM, Vazquez J, Tress ML.

Nucleic Acids Res. 2018 Aug 21;46(14):7070-7084. doi: 10.1093/nar/gky587. Erratum in: Nucleic Acids Res. 2018 Dec 14;46(22):12194.

9.

Time-dependent analysis of dosage delivery information for patient-controlled analgesia services.

Kuo IT, Chang KY, Juan DF, Hsu SJ, Chan CT, Tsou MY.

PLoS One. 2018 Mar 15;13(3):e0194140. doi: 10.1371/journal.pone.0194140. eCollection 2018.

10.

A proposed classification for assessing rupture risk in patients with intracranial arteriovenous malformations.

Padilla-Vazquez F, Zenteno MA, Balderrama J, Escobar-de la Garma VH, Juan DS, Trenado C.

Surg Neurol Int. 2017 Dec 27;8:303. doi: 10.4103/sni.sni_273_17. eCollection 2017.

11.

Automatic identification of informative regions with epigenomic changes associated to hematopoiesis.

Carrillo-de-Santa-Pau E, Juan D, Pancaldi V, Were F, Martin-Subero I, Rico D, Valencia A; BLUEPRINT Consortium.

Nucleic Acids Res. 2017 Sep 19;45(16):9244-9259. doi: 10.1093/nar/gkx618.

12.

Restoration: Implant with Devastated Platform through Metal Post.

Tatiana LS, Juan DV.

Case Rep Dent. 2017;2017:3150656. doi: 10.1155/2017/3150656. Epub 2017 Feb 13.

13.

Association between mean platelet volume and hypertension incidence.

Gang L, Yanyan Z, Zhongwei Z, Juan D.

Hypertens Res. 2017 Aug;40(8):779-784. doi: 10.1038/hr.2017.30. Epub 2017 Mar 9.

PMID:
28275234
14.

Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types.

Ecker S, Chen L, Pancaldi V, Bagger FO, Fernández JM, Carrillo de Santa Pau E, Juan D, Mann AL, Watt S, Casale FP, Sidiropoulos N, Rapin N, Merkel A; BLUEPRINT Consortium, Stunnenberg HG, Stegle O, Frontini M, Downes K, Pastinen T, Kuijpers TW, Rico D, Valencia A, Beck S, Soranzo N, Paul DS.

Genome Biol. 2017 Jan 26;18(1):18. doi: 10.1186/s13059-017-1156-8.

15.

Conservation of coevolving protein interfaces bridges prokaryote-eukaryote homologies in the twilight zone.

Rodriguez-Rivas J, Marsili S, Juan D, Valencia A.

Proc Natl Acad Sci U S A. 2016 Dec 27;113(52):15018-15023. doi: 10.1073/pnas.1611861114. Epub 2016 Dec 13.

16.

The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.

Astle WJ, Elding H, Jiang T, Allen D, Ruklisa D, Mann AL, Mead D, Bouman H, Riveros-Mckay F, Kostadima MA, Lambourne JJ, Sivapalaratnam S, Downes K, Kundu K, Bomba L, Berentsen K, Bradley JR, Daugherty LC, Delaneau O, Freson K, Garner SF, Grassi L, Guerrero J, Haimel M, Janssen-Megens EM, Kaan A, Kamat M, Kim B, Mandoli A, Marchini J, Martens JHA, Meacham S, Megy K, O'Connell J, Petersen R, Sharifi N, Sheard SM, Staley JR, Tuna S, van der Ent M, Walter K, Wang SY, Wheeler E, Wilder SP, Iotchkova V, Moore C, Sambrook J, Stunnenberg HG, Di Angelantonio E, Kaptoge S, Kuijpers TW, Carrillo-de-Santa-Pau E, Juan D, Rico D, Valencia A, Chen L, Ge B, Vasquez L, Kwan T, Garrido-Martín D, Watt S, Yang Y, Guigo R, Beck S, Paul DS, Pastinen T, Bujold D, Bourque G, Frontini M, Danesh J, Roberts DJ, Ouwehand WH, Butterworth AS, Soranzo N.

Cell. 2016 Nov 17;167(5):1415-1429.e19. doi: 10.1016/j.cell.2016.10.042.

17.

[Qualitative analysis of bis-(3'-5')-cyclic dimeric adenosine monophosphate of Porphyromonas gingivalis by high performance liquid chromatography coupled with mass spectrometry].

Yongmei T, Xiaojun Y, Juan D, Wanghong Z, Xiaodan C, Jin H.

Hua Xi Kou Qiang Yi Xue Za Zhi. 2016 Jun;34(3):307-11. Chinese.

18.

Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity.

Pancaldi V, Carrillo-de-Santa-Pau E, Javierre BM, Juan D, Fraser P, Spivakov M, Valencia A, Rico D.

Genome Biol. 2016 Jul 8;17(1):152. doi: 10.1186/s13059-016-1003-3.

19.

Epigenomic Co-localization and Co-evolution Reveal a Key Role for 5hmC as a Communication Hub in the Chromatin Network of ESCs.

Juan D, Perner J, Carrillo de Santa Pau E, Marsili S, Ochoa D, Chung HR, Vingron M, Rico D, Valencia A.

Cell Rep. 2016 Feb 9;14(5):1246-1257. doi: 10.1016/j.celrep.2016.01.008. Epub 2016 Jan 28.

20.

Multimodal imaging biomarkers in premanifest and early Huntington's disease: 30-month IMAGE-HD data.

D JF, Stout JC, Poudel G, Churchyard A, Chua P, Egan GF, Georgiou-Karistianis N.

Br J Psychiatry. 2016 Jun;208(6):571-8. doi: 10.1192/bjp.bp.114.156588. Epub 2015 Dec 17.

PMID:
26678864
21.

[Duchenne and Becker muscular dystrophy complicated with epilepsy].

Cuijie W, Haipo Y, Xiaona F, Aijie L, Juan D, Shujuan S, Shuang W, Xingzhi C, Yanling Y, Yuwu J, Hui X.

Zhonghua Er Ke Za Zhi. 2015 Apr;53(4):274-9. Chinese.

PMID:
26182502
22.

Detection of significant protein coevolution.

Ochoa D, Juan D, Valencia A, Pazos F.

Bioinformatics. 2015 Jul 1;31(13):2166-73. doi: 10.1093/bioinformatics/btv102. Epub 2015 Feb 24.

PMID:
25717190
23.

[Changes in chemokine receptor 4, interleukin-6, and collagen X expression in the ATDC5 cell line stimulated by cyclic tensile strain and stromal cell-derived factor-1].

Bin K, Qingyu W, Rong S, Yanyan S, Zhiguo C, Yinzhong D, Juan D.

Hua Xi Kou Qiang Yi Xue Za Zhi. 2014 Dec;32(6):592-5. Chinese.

24.

Antidepressant-like effects of cordycepin in a mice model of chronic unpredictable mild stress.

Tianzhu Z, Shihai Y, Juan D.

Evid Based Complement Alternat Med. 2014;2014:438506. doi: 10.1155/2014/438506. Epub 2014 Dec 23.

25.
26.

Multiple evidence strands suggest that there may be as few as 19,000 human protein-coding genes.

Ezkurdia I, Juan D, Rodriguez JM, Frankish A, Diekhans M, Harrow J, Vazquez J, Valencia A, Tress ML.

Hum Mol Genet. 2014 Nov 15;23(22):5866-78. doi: 10.1093/hmg/ddu309. Epub 2014 Jun 16.

27.

The effects of morin on lipopolysaccharide-induced acute lung injury by suppressing the lung NLRP3 inflammasome.

Tianzhu Z, Shihai Y, Juan D.

Inflammation. 2014 Dec;37(6):1976-83. doi: 10.1007/s10753-014-9930-1.

PMID:
24849134
28.

Transcriptional dissection of pancreatic tumors engrafted in mice.

Martinez-Garcia R, Juan D, Rausell A, Muñoz M, Baños N, Menéndez C, Lopez-Casas PP, Rico D, Valencia A, Hidalgo M.

Genome Med. 2014 Apr 16;6(4):27. doi: 10.1186/gm544. eCollection 2014.

29.

Late-replicating CNVs as a source of new genes.

Juan D, Rico D, Marques-Bonet T, Fernández-Capetillo O, Valencia A.

Biol Open. 2014 Mar 15;3(3). pii: 231. doi: 10.1242/bio.20147815. No abstract available.

30.

Antinociceptive effect of matrine on vincristine-induced neuropathic pain model in mice.

Linglu D, Yuxiang L, Yaqiong X, Ru Z, Lin M, Shaoju J, Juan D, Tao S, Jianqiang Y.

Neurol Sci. 2014 Jun;35(6):815-21. doi: 10.1007/s10072-013-1603-6. Epub 2013 Dec 14.

PMID:
24337989
31.

Late-replicating CNVs as a source of new genes.

Juan D, Rico D, Marques-Bonet T, Fernández-Capetillo O, Valencia A.

Biol Open. 2013 Dec 15;2(12):1402-11. doi: 10.1242/bio.20136924. Erratum in: Biol Open. 2014 Mar 15;3(3):.

32.

Subfunctionalization via adaptive evolution influenced by genomic context: the case of histone chaperones ASF1a and ASF1b.

Abascal F, Corpet A, Gurard-Levin ZA, Juan D, Ochsenbein F, Rico D, Valencia A, Almouzni G.

Mol Biol Evol. 2013 Aug;30(8):1853-66. doi: 10.1093/molbev/mst086. Epub 2013 May 2.

PMID:
23645555
33.

Emerging methods in protein co-evolution.

de Juan D, Pazos F, Valencia A.

Nat Rev Genet. 2013 Apr;14(4):249-61. doi: 10.1038/nrg3414. Epub 2013 Mar 5. Review.

PMID:
23458856
34.

Incorporating information on predicted solvent accessibility to the co-evolution-based study of protein interactions.

Ochoa D, García-Gutiérrez P, Juan D, Valencia A, Pazos F.

Mol Biosyst. 2013 Jan 27;9(1):70-6. doi: 10.1039/c2mb25325a. Epub 2012 Oct 26.

PMID:
23104128
35.

Subtle mutations in the SMN1 gene in Chinese patients with SMA: p.Arg288Met mutation causing SMN1 transcript exclusion of exon7.

Yu-Jin Q, Juan D, Er-zhen L, Jin-li B, Yu-wei J, Hong W, Fang S.

BMC Med Genet. 2012 Sep 20;13:86. doi: 10.1186/1471-2350-13-86.

36.

Spectral entropy monitoring reduces anesthetic dosage for patients undergoing off-pump coronary artery bypass graft surgery.

Jiahai M, Xueyan W, Yonggang X, Jianhong Y, Qunhui H, Zhi L, Juan D, Xiuliang J.

J Cardiothorac Vasc Anesth. 2012 Oct;26(5):818-21. doi: 10.1053/j.jvca.2012.01.028. Epub 2012 Apr 12.

PMID:
22502772
37.

Uncovering the molecular machinery of the human spindle--an integration of wet and dry systems biology.

Rojas AM, Santamaria A, Malik R, Jensen TS, Körner R, Morilla I, de Juan D, Krallinger M, Hansen DA, Hoffmann R, Lees J, Reid A, Yeats C, Wehner A, Elowe S, Clegg AB, Brunak S, Nigg EA, Orengo C, Valencia A, Ranea JA.

PLoS One. 2012;7(3):e31813. doi: 10.1371/journal.pone.0031813. Epub 2012 Mar 9.

38.

Mirroring co-evolving trees in the light of their topologies.

Hajirasouliha I, Schönhuth A, de Juan D, Valencia A, Sahinalp SC.

Bioinformatics. 2012 May 1;28(9):1202-8. doi: 10.1093/bioinformatics/bts109. Epub 2012 Mar 6.

PMID:
22399677
39.

3-Hydroxy-3-methylglutaryl coenzyme A reductase 1 (HMG1) is highly associated with the cell division during the early stage of fruit development which determines the final fruit size in Litchi chinensis.

Rui X, Caiqin L, Wangjin L, Juan D, Zehuai W, Jianguo L.

Gene. 2012 Apr 25;498(1):28-35. doi: 10.1016/j.gene.2012.01.079. Epub 2012 Feb 4.

PMID:
22326527
40.

JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures.

Muth T, García-Martín JA, Rausell A, Juan D, Valencia A, Pazos F.

Bioinformatics. 2012 Feb 15;28(4):584-6. doi: 10.1093/bioinformatics/btr688. Epub 2011 Dec 9.

PMID:
22171333
41.

HLA-DRB1*15:01 and multiple sclerosis: a female association?

Irizar H, Muñoz-Culla M, Zuriarrain O, Goyenechea E, Castillo-Triviño T, Prada A, Saenz-Cuesta M, De Juan D, Lopez de Munain A, Olascoaga J, Otaegui D.

Mult Scler. 2012 May;18(5):569-77. doi: 10.1177/1352458511426813. Epub 2011 Nov 29.

PMID:
22127897
42.

Process design and economic analysis of a hypothetical bioethanol production plant using carob pod as feedstock.

Sánchez-Segado S, Lozano LJ, de Los Ríos AP, Hernández-Fernández FJ, Godínez C, Juan D.

Bioresour Technol. 2012 Jan;104:324-8. doi: 10.1016/j.biortech.2011.10.046. Epub 2011 Oct 28.

PMID:
22100234
43.

Selection of organisms for the co-evolution-based study of protein interactions.

Herman D, Ochoa D, Juan D, Lopez D, Valencia A, Pazos F.

BMC Bioinformatics. 2011 Sep 12;12:363. doi: 10.1186/1471-2105-12-363.

44.

Clinical efficacy and safety of tacrolimus ointment in patients with vitiligo.

Juan D, Qianxi X, Zhou C, Jianzhong Z.

J Dermatol. 2011 Nov;38(11):1092-4. doi: 10.1111/j.1346-8138.2010.01124.x. Epub 2011 Sep 5. No abstract available.

PMID:
21895744
45.

Identifying mRNA targets of microRNA dysregulated in cancer: with application to clear cell Renal Cell Carcinoma.

Liu H, Brannon AR, Reddy AR, Alexe G, Seiler MW, Arreola A, Oza JH, Yao M, Juan D, Liou LS, Ganesan S, Levine AJ, Rathmell WK, Bhanot GV.

BMC Syst Biol. 2010 Apr 27;4:51. doi: 10.1186/1752-0509-4-51.

46.

Inference of functional relations in predicted protein networks with a machine learning approach.

García-Jiménez B, Juan D, Ezkurdia I, Andrés-León E, Valencia A.

PLoS One. 2010 Apr 1;5(4):e9969. doi: 10.1371/journal.pone.0009969.

47.

Protein interactions and ligand binding: from protein subfamilies to functional specificity.

Rausell A, Juan D, Pazos F, Valencia A.

Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):1995-2000. doi: 10.1073/pnas.0908044107. Epub 2010 Jan 19.

48.

Identification of a microRNA panel for clear-cell kidney cancer.

Juan D, Alexe G, Antes T, Liu H, Madabhushi A, Delisi C, Ganesan S, Bhanot G, Liou LS.

Urology. 2010 Apr;75(4):835-41. doi: 10.1016/j.urology.2009.10.033. Epub 2009 Dec 29.

PMID:
20035975
49.

The immune boundaries for stem cell based therapies: problems and prospective solutions.

Hmadcha A, Domínguez-Bendala J, Wakeman J, Arredouani M, Soria B.

J Cell Mol Med. 2009 Aug;13(8A):1464-75. doi: 10.1111/j.1582-4934.2009.00837.x. Epub 2009 Jul 6. Review. Erratum in: J Cell Mol Med. 2009 Aug;13(8B):2754. Abdelkrim, Hmadcha [corrected to Hmadcha, Abdelkrim]; Juan, Domínguez-Bendala [corrected to Domínguez-Bendala, Juan]; Jane, Wakeman [corrected to Wakeman, Jane]; Mohamed, Arredouani [corrected to Arredouani, Mohamed]; Bernat, Soria [corrected to Soria, B.

50.

Upregulation effect of ginsenosides on glucocorticoid receptor in rat liver.

Binbin C, Yinglu F, Juan D, Changquan L.

Horm Metab Res. 2009 Jul;41(7):531-6. doi: 10.1055/s-0029-1216373. Epub 2009 May 5.

PMID:
19418418

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