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Items: 16

1.

Large Circular Plasmids from Groundwater Plasmidomes Span Multiple Incompatibility Groups and Are Enriched in Multimetal Resistance Genes.

Kothari A, Wu YW, Chandonia JM, Charrier M, Rajeev L, Rocha AM, Joyner DC, Hazen TC, Singer SW, Mukhopadhyay A.

MBio. 2019 Feb 26;10(1). pii: e02899-18. doi: 10.1128/mBio.02899-18.

2.

Comparison of Thaumarchaeotal populations from four deep sea basins.

Techtman SM, Mahmoudi N, Whitt KT, Campa MF, Fortney JL, Joyner DC, Hazen TC.

FEMS Microbiol Ecol. 2017 Nov 1;93(11). doi: 10.1093/femsec/fix128.

3.

Natural bacterial communities serve as quantitative geochemical biosensors.

Smith MB, Rocha AM, Smillie CS, Olesen SW, Paradis C, Wu L, Campbell JH, Fortney JL, Mehlhorn TL, Lowe KA, Earles JE, Phillips J, Techtmann SM, Joyner DC, Elias DA, Bailey KL, Hurt RA Jr, Preheim SP, Sanders MC, Yang J, Mueller MA, Brooks S, Watson DB, Zhang P, He Z, Dubinsky EA, Adams PD, Arkin AP, Fields MW, Zhou J, Alm EJ, Hazen TC.

MBio. 2015 May 12;6(3):e00326-15. doi: 10.1128/mBio.00326-15.

4.

The unique chemistry of Eastern Mediterranean water masses selects for distinct microbial communities by depth.

Techtmann SM, Fortney JL, Ayers KA, Joyner DC, Linley TD, Pfiffner SM, Hazen TC.

PLoS One. 2015 Mar 25;10(3):e0120605. doi: 10.1371/journal.pone.0120605. eCollection 2015.

5.

Microbial community composition and diversity in Caspian Sea sediments.

Mahmoudi N, Robeson MS 2nd, Castro HF, Fortney JL, Techtmann SM, Joyner DC, Paradis CJ, Pfiffner SM, Hazen TC.

FEMS Microbiol Ecol. 2015 Jan;91(1):1-11. doi: 10.1093/femsec/fiu013. Epub 2014 Dec 5.

6.

Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill.

Mason OU, Scott NM, Gonzalez A, Robbins-Pianka A, Bælum J, Kimbrel J, Bouskill NJ, Prestat E, Borglin S, Joyner DC, Fortney JL, Jurelevicius D, Stringfellow WT, Alvarez-Cohen L, Hazen TC, Knight R, Gilbert JA, Jansson JK.

ISME J. 2014 Jul;8(7):1464-75. doi: 10.1038/ismej.2013.254. Epub 2014 Jan 23.

7.

Microbial community response to addition of polylactate compounds to stimulate hexavalent chromium reduction in groundwater.

Brodie EL, Joyner DC, Faybishenko B, Conrad ME, Rios-Velazquez C, Malave J, Martinez R, Mork B, Willett A, Koenigsberg S, Herman DJ, Firestone MK, Hazen TC.

Chemosphere. 2011 Oct;85(4):660-5. doi: 10.1016/j.chemosphere.2011.07.021. Epub 2011 Aug 27.

PMID:
21872904
8.

Use of immunomagnetic separation for the detection of Desulfovibrio vulgaris from environmental samples.

Chakraborty R, Hazen TC, Joyner DC, Küsel K, Singer ME, Sitte J, Torok T.

J Microbiol Methods. 2011 Aug;86(2):204-9. doi: 10.1016/j.mimet.2011.05.005. Epub 2011 May 13.

PMID:
21605602
9.

Deep-sea oil plume enriches indigenous oil-degrading bacteria.

Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, Singh N, Jansson JK, Probst A, Borglin SE, Fortney JL, Stringfellow WT, Bill M, Conrad ME, Tom LM, Chavarria KL, Alusi TR, Lamendella R, Joyner DC, Spier C, Baelum J, Auer M, Zemla ML, Chakraborty R, Sonnenthal EL, D'haeseleer P, Holman HY, Osman S, Lu Z, Van Nostrand JD, Deng Y, Zhou J, Mason OU.

Science. 2010 Oct 8;330(6001):204-8. doi: 10.1126/science.1195979. Epub 2010 Aug 24.

10.

Impact of elevated nitrate on sulfate-reducing bacteria: a comparative study of Desulfovibrio vulgaris.

He Q, He Z, Joyner DC, Joachimiak M, Price MN, Yang ZK, Yen HC, Hemme CL, Chen W, Fields MM, Stahl DA, Keasling JD, Keller M, Arkin AP, Hazen TC, Wall JD, Zhou J.

ISME J. 2010 Nov;4(11):1386-97. doi: 10.1038/ismej.2010.59. Epub 2010 May 6.

PMID:
20445634
11.

Response of Desulfovibrio vulgaris to alkaline stress.

Stolyar S, He Q, Joachimiak MP, He Z, Yang ZK, Borglin SE, Joyner DC, Huang K, Alm E, Hazen TC, Zhou J, Wall JD, Arkin AP, Stahl DA.

J Bacteriol. 2007 Dec;189(24):8944-52. Epub 2007 Oct 5.

12.

Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough.

Mukhopadhyay A, Redding AM, Joachimiak MP, Arkin AP, Borglin SE, Dehal PS, Chakraborty R, Geller JT, Hazen TC, He Q, Joyner DC, Martin VJ, Wall JD, Yang ZK, Zhou J, Keasling JD.

J Bacteriol. 2007 Aug;189(16):5996-6010. Epub 2007 Jun 1.

13.

Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation.

Brodie EL, Desantis TZ, Joyner DC, Baek SM, Larsen JT, Andersen GL, Hazen TC, Richardson PM, Herman DJ, Tokunaga TK, Wan JM, Firestone MK.

Appl Environ Microbiol. 2006 Sep;72(9):6288-98.

14.

Study of nitrate stress in Desulfovibrio vulgaris Hildenborough using iTRAQ proteomics.

Redding AM, Mukhopadhyay A, Joyner DC, Hazen TC, Keasling JD.

Brief Funct Genomic Proteomic. 2006 Jun;5(2):133-43. Epub 2006 May 23. Review.

PMID:
16772278
15.

Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach.

Mukhopadhyay A, He Z, Alm EJ, Arkin AP, Baidoo EE, Borglin SC, Chen W, Hazen TC, He Q, Holman HY, Huang K, Huang R, Joyner DC, Katz N, Keller M, Oeller P, Redding A, Sun J, Wall J, Wei J, Yang Z, Yen HC, Zhou J, Keasling JD.

J Bacteriol. 2006 Jun;188(11):4068-78.

16.

Heterogeneity of iron bioavailability on plants assessed with a whole-cell GFP-based bacterial biosensor.

Joyner DC, Lindow SE.

Microbiology. 2000 Oct;146 ( Pt 10):2435-45.

PMID:
11021920

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