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Phage combination therapies for bacterial wilt disease in tomato.

Wang X, Wei Z, Yang K, Wang J, Jousset A, Xu Y, Shen Q, Friman VP.

Nat Biotechnol. 2019 Dec;37(12):1513-1520. doi: 10.1038/s41587-019-0328-3. Epub 2019 Dec 2.


A 2.5-years within-patient evolution of a Pseudomonas aeruginosa with in vivo acquisition of ceftolozane-tazobactam and ceftazidime-avibactam resistance upon treatment.

Boulant T, Jousset AB, Bonnin RA, Barrail-Tran A, Borgel A, Oueslati S, Naas T, Dortet L.

Antimicrob Agents Chemother. 2019 Oct 21. pii: AAC.01637-19. doi: 10.1128/AAC.01637-19. [Epub ahead of print]


Initial soil microbiome composition and functioning predetermine future plant health.

Wei Z, Gu Y, Friman VP, Kowalchuk GA, Xu Y, Shen Q, Jousset A.

Sci Adv. 2019 Sep 25;5(9):eaaw0759. doi: 10.1126/sciadv.aaw0759. eCollection 2019 Sep.


Root-associated microorganisms reprogram plant life history along the growth-stress resistance tradeoff.

Ravanbakhsh M, Kowalchuk GA, Jousset A.

ISME J. 2019 Dec;13(12):3093-3101. doi: 10.1038/s41396-019-0501-1. Epub 2019 Sep 11.


Optimization of plant hormonal balance by microorganisms prevents plant heavy metal accumulation.

Ravanbakhsh M, Kowalchuk GA, Jousset A.

J Hazard Mater. 2019 Nov 5;379:120787. doi: 10.1016/j.jhazmat.2019.120787. Epub 2019 Jun 17.


Unravelling ceftazidime/avibactam resistance of KPC-28, a KPC-2 variant lacking carbapenemase activity.

Oueslati S, Iorga BI, Tlili L, Exilie C, Zavala A, Dortet L, Jousset AB, Bernabeu S, Bonnin RA, Naas T.

J Antimicrob Chemother. 2019 Aug 1;74(8):2239-2246. doi: 10.1093/jac/dkz209.


Resource stoichiometry shapes community invasion resistance via productivity-mediated species identity effects.

Yang T, Han G, Yang Q, Friman VP, Gu S, Wei Z, Kowalchuk GA, Xu Y, Shen Q, Jousset A.

Proc Biol Sci. 2018 Dec 19;285(1893):20182035. doi: 10.1098/rspb.2018.2035.


False-Positive Carbapenem-Hydrolyzing Confirmatory Tests Due to ACT-28, a Chromosomally Encoded AmpC with Weak Carbapenemase Activity from Enterobacter kobei.

Jousset AB, Oueslati S, Bernabeu S, Takissian J, Creton E, Vogel A, Sauvadet A, Cotellon G, Gauthier L, Bonnin RA, Dortet L, Naas T.

Antimicrob Agents Chemother. 2019 Apr 25;63(5). pii: e02388-18. doi: 10.1128/AAC.02388-18. Print 2019 May.


Transcriptional Landscape of a bla KPC-2 Plasmid and Response to Imipenem Exposure in Escherichia coli TOP10.

Jousset AB, Rosinski-Chupin I, Takissian J, Glaser P, Bonnin RA, Naas T.

Front Microbiol. 2018 Dec 3;9:2929. doi: 10.3389/fmicb.2018.02929. eCollection 2018.


Facilitation promotes invasions in plant-associated microbial communities.

Li M, Wei Z, Wang J, Jousset A, Friman VP, Xu Y, Shen Q, Pommier T.

Ecol Lett. 2019 Jan;22(1):149-158. doi: 10.1111/ele.13177. Epub 2018 Nov 20.


Protists: Puppet Masters of the Rhizosphere Microbiome.

Gao Z, Karlsson I, Geisen S, Kowalchuk G, Jousset A.

Trends Plant Sci. 2019 Feb;24(2):165-176. doi: 10.1016/j.tplants.2018.10.011. Epub 2018 Nov 13. Review.


Development and validation of a multiplex polymerase chain reaction assay for detection of the five families of plasmid-encoded colistin resistance.

Jousset AB, Bernabeu S, Bonnin RA, Creton E, Cotellon G, Sauvadet A, Naas T, Dortet L.

Int J Antimicrob Agents. 2019 Mar;53(3):302-309. doi: 10.1016/j.ijantimicag.2018.10.022. Epub 2018 Nov 3.


Legacy of land use history determines reprogramming of plant physiology by soil microbiome.

Li X, Jousset A, de Boer W, Carrión VJ, Zhang T, Wang X, Kuramae EE.

ISME J. 2019 Mar;13(3):738-751. doi: 10.1038/s41396-018-0300-0. Epub 2018 Oct 27.


Molecular characterization of plasmid-encoded Tripoli MBL 1 (TMB-1) in Enterobacteriaceae.

Gauthier L, Dortet L, Jousset AB, Mihaila L, Golse N, Naas T, Bonnin RA.

J Antimicrob Chemother. 2019 Jan 1;74(1):42-47. doi: 10.1093/jac/dky372.


Rapid detection and discrimination of chromosome- and MCR-plasmid-mediated resistance to polymyxins by MALDI-TOF MS in Escherichia coli: the MALDIxin test.

Dortet L, Bonnin RA, Pennisi I, Gauthier L, Jousset AB, Dabos L, Furniss RCD, Mavridou DAI, Bogaerts P, Glupczynski Y, Potron A, Plesiat P, Beyrouthy R, Robin F, Bonnet R, Naas T, Filloux A, Larrouy-Maumus G.

J Antimicrob Chemother. 2018 Dec 1;73(12):3359-3367. doi: 10.1093/jac/dky330.


Genetic and Biochemical Characterization of OXA-535, a Distantly Related OXA-48-Like β-Lactamase.

Dabos L, Jousset AB, Bonnin RA, Fortineau N, Zavala A, Retailleau P, Iorga BI, Naas T.

Antimicrob Agents Chemother. 2018 Sep 24;62(10). pii: e01198-18. doi: 10.1128/AAC.01198-18. Print 2018 Oct.


Novel Enterobacter Lineage as Leading Cause of Nosocomial Outbreak Involving Carbapenemase-Producing Strains.

Beyrouthy R, Barets M, Marion E, Dananché C, Dauwalder O, Robin F, Gauthier L, Jousset A, Dortet L, Guérin F, Bénet T, Cassier P, Vanhems P, Bonnet R.

Emerg Infect Dis. 2018 Aug;24(8):1505-1515. doi: 10.3201/eid2408.180151.


MALDI-TOF for the rapid detection of carbapenemase-producing Enterobacteriaceae: comparison of the commercialized MBT STAR®-Carba IVD Kit with two in-house MALDI-TOF techniques and the RAPIDEC® CARBA NP.

Dortet L, Tandé D, de Briel D, Bernabeu S, Lasserre C, Gregorowicz G, Jousset AB, Naas T.

J Antimicrob Chemother. 2018 Sep 1;73(9):2352-2359. doi: 10.1093/jac/dky209.


Elevated CO2 accelerates polycyclic aromatic hydrocarbon accumulation in a paddy soil grown with rice.

Ai F, Eisenhauer N, Xie Y, Zhu J, Jousset A, Du W, Yin Y, Zhang X, Ji R, Guo H.

PLoS One. 2018 Apr 24;13(4):e0196439. doi: 10.1371/journal.pone.0196439. eCollection 2018.


A 4.5-Year Within-Patient Evolution of a Colistin-Resistant Klebsiella pneumoniae Carbapenemase-Producing K. pneumoniae Sequence Type 258.

Jousset AB, Bonnin RA, Rosinski-Chupin I, Girlich D, Cuzon G, Cabanel N, Frech H, Farfour E, Dortet L, Glaser P, Naas T.

Clin Infect Dis. 2018 Oct 15;67(9):1388-1394. doi: 10.1093/cid/ciy293.


Elevated tropospheric CO2 and O3 concentrations impair organic pollutant removal from grassland soil.

Ai F, Eisenhauer N, Jousset A, Butenschoen O, Ji R, Guo H.

Sci Rep. 2018 Apr 3;8(1):5519. doi: 10.1038/s41598-018-23522-z.


Microbial modulation of plant ethylene signaling: ecological and evolutionary consequences.

Ravanbakhsh M, Sasidharan R, Voesenek LACJ, Kowalchuk GA, Jousset A.

Microbiome. 2018 Mar 21;6(1):52. doi: 10.1186/s40168-018-0436-1. Review.


In cell mutational interference mapping experiment (in cell MIME) identifies the 5' polyadenylation signal as a dual regulator of HIV-1 genomic RNA production and packaging.

Smyth RP, Smith MR, Jousset AC, Despons L, Laumond G, Decoville T, Cattenoz P, Moog C, Jossinet F, Mougel M, Paillart JC, von Kleist M, Marquet R.

Nucleic Acids Res. 2018 May 18;46(9):e57. doi: 10.1093/nar/gky152.


Soil protists: a fertile frontier in soil biology research.

Geisen S, Mitchell EAD, Adl S, Bonkowski M, Dunthorn M, Ekelund F, Fernández LD, Jousset A, Krashevska V, Singer D, Spiegel FW, Walochnik J, Lara E.

FEMS Microbiol Rev. 2018 May 1;42(3):293-323. doi: 10.1093/femsre/fuy006. Review.


Sub-lethal doses of widespread nanoparticles promote antifungal activity in Pseudomonas protegens CHA0.

Khan ST, Ahmad J, Ahamed M, Jousset A.

Sci Total Environ. 2018 Jun 15;627:658-662. doi: 10.1016/j.scitotenv.2018.01.257. Epub 2018 Feb 3.


A multiplex lateral flow immunoassay for the rapid identification of NDM-, KPC-, IMP- and VIM-type and OXA-48-like carbapenemase-producing Enterobacteriaceae.

Boutal H, Vogel A, Bernabeu S, Devilliers K, Creton E, Cotellon G, Plaisance M, Oueslati S, Dortet L, Jousset A, Simon S, Naas T, Volland H.

J Antimicrob Chemother. 2018 Apr 1;73(4):909-915. doi: 10.1093/jac/dkx521.


Functionality of Root-Associated Bacteria along a Salt Marsh Primary Succession.

Wang M, Li E, Liu C, Jousset A, Salles JF.

Front Microbiol. 2017 Oct 30;8:2102. doi: 10.3389/fmicb.2017.02102. eCollection 2017.


Seasonal variation in the biocontrol efficiency of bacterial wilt is driven by temperature-mediated changes in bacterial competitive interactions.

Wei Z, Huang J, Yang T, Jousset A, Xu Y, Shen Q, Friman VP.

J Appl Ecol. 2017 Oct;54(5):1440-1448. doi: 10.1111/1365-2664.12873. Epub 2017 Feb 23.


CTX-M-15-Producing Shewanella Species Clinical Isolate Expressing OXA-535, a Chromosome-Encoded OXA-48 Variant, Putative Progenitor of the Plasmid-Encoded OXA-436.

Jousset AB, Dabos L, Bonnin RA, Girlich D, Potron A, Cabanel N, Dortet L, Glaser P, Naas T.

Antimicrob Agents Chemother. 2017 Dec 21;62(1). pii: e01879-17. doi: 10.1128/AAC.01879-17. Print 2018 Jan.


Soil protist communities form a dynamic hub in the soil microbiome.

Xiong W, Jousset A, Guo S, Karlsson I, Zhao Q, Wu H, Kowalchuk GA, Shen Q, Li R, Geisen S.

ISME J. 2018 Feb;12(2):634-638. doi: 10.1038/ismej.2017.171. Epub 2017 Oct 13.


Plant Breeding Goes Microbial.

Wei Z, Jousset A.

Trends Plant Sci. 2017 Jul;22(7):555-558. doi: 10.1016/j.tplants.2017.05.009. Epub 2017 Jun 4.


Integrating HIV and Maternal, Neonatal and Child Health Services in Rural Malawi: An Evaluation of the Implementation Processes and Challenges.

Gunda A, Jousset A, Tchereni T, Joseph J, Mwapasa V.

J Acquir Immune Defic Syndr. 2017 Jun 1;75 Suppl 2:S132-S139. doi: 10.1097/QAI.0000000000001367. Erratum in: J Acquir Immune Defic Syndr. 2018 Sep 1;79(1):e51.


Impact of Mother-Infant Pair Clinics and Short-Text Messaging Service (SMS) Reminders on Retention of HIV-Infected Women and HIV-Exposed Infants in eMTCT Care in Malawi: A Cluster Randomized Trial.

Mwapasa V, Joseph J, Tchereni T, Jousset A, Gunda A.

J Acquir Immune Defic Syndr. 2017 Jun 1;75 Suppl 2:S123-S131. doi: 10.1097/QAI.0000000000001340.


Prospective evaluation of the OKN K-SeT assay, a new multiplex immunochromatographic test for the rapid detection of OXA-48-like, KPC and NDM carbapenemases.

Glupczynski Y, Jousset A, Evrard S, Bonnin RA, Huang TD, Dortet L, Bogaerts P, Naas T.

J Antimicrob Chemother. 2017 Jul 1;72(7):1955-1960. doi: 10.1093/jac/dkx089.


Promoter characterization and expression of the blaKPC-2 gene in Escherichia coli, Pseudomonas aeruginosa and Acinetobacter baumannii.

Girlich D, Bonnin RA, Jousset A, Naas T.

J Antimicrob Chemother. 2017 Jun 1;72(6):1597-1601. doi: 10.1093/jac/dkx044.


Resource availability modulates biodiversity-invasion relationships by altering competitive interactions.

Yang T, Wei Z, Friman VP, Xu Y, Shen Q, Kowalchuk GA, Jousset A.

Environ Microbiol. 2017 Aug;19(8):2984-2991. doi: 10.1111/1462-2920.13708. Epub 2017 Mar 20.


Where less may be more: how the rare biosphere pulls ecosystems strings.

Jousset A, Bienhold C, Chatzinotas A, Gallien L, Gobet A, Kurm V, Küsel K, Rillig MC, Rivett DW, Salles JF, van der Heijden MG, Youssef NH, Zhang X, Wei Z, Hol WH.

ISME J. 2017 Apr;11(4):853-862. doi: 10.1038/ismej.2016.174. Epub 2017 Jan 10.


Detection of GES-5 Carbapenemase in Klebsiella pneumoniae, a Newcomer in France.

Bonnin RA, Jousset AB, Urvoy N, Gauthier L, Tlili L, Creton E, Cotellon G, Arthur F, Dortet L, Naas T.

Antimicrob Agents Chemother. 2017 Feb 23;61(3). pii: e02263-16. doi: 10.1128/AAC.02263-16. Print 2017 Mar. No abstract available.


Probiotic Diversity Enhances Rhizosphere Microbiome Function and Plant Disease Suppression.

Hu J, Wei Z, Friman VP, Gu SH, Wang XF, Eisenhauer N, Yang TJ, Ma J, Shen QR, Xu YC, Jousset A.

MBio. 2016 Dec 13;7(6). pii: e01790-16. doi: 10.1128/mBio.01790-16.


Parasites and competitors suppress bacterial pathogen synergistically due to evolutionary trade-offs.

Wang X, Wei Z, Li M, Wang X, Shan A, Mei X, Jousset A, Shen Q, Xu Y, Friman VP.

Evolution. 2017 Mar;71(3):733-746. doi: 10.1111/evo.13143. Epub 2016 Dec 27.


Flood-Induced Changes in Soil Microbial Functions as Modified by Plant Diversity.

González Macé O, Steinauer K, Jousset A, Eisenhauer N, Scheu S.

PLoS One. 2016 Nov 21;11(11):e0166349. doi: 10.1371/journal.pone.0166349. eCollection 2016.


High functional diversity stimulates diversification in experimental microbial communities.

Jousset A, Eisenhauer N, Merker M, Mouquet N, Scheu S.

Sci Adv. 2016 Jun 24;2(6):e1600124. doi: 10.1126/sciadv.1600124. eCollection 2016 Jun.


Unravelling Linkages between Plant Community Composition and the Pathogen-Suppressive Potential of Soils.

Latz E, Eisenhauer N, Rall BC, Scheu S, Jousset A.

Sci Rep. 2016 Mar 29;6:23584. doi: 10.1038/srep23584.


Prospective evaluation of the OXA-48 K-SeT assay, an immunochromatographic test for the rapid detection of OXA-48-type carbapenemases.

Dortet L, Jousset A, Sainte-Rose V, Cuzon G, Naas T.

J Antimicrob Chemother. 2016 Jul;71(7):1834-40. doi: 10.1093/jac/dkw058. Epub 2016 Mar 10.


Coprophilic amoebae and flagellates, including Guttulinopsis, Rosculus and Helkesimastix, characterise a divergent and diverse rhizarian radiation and contribute to a large diversity of faecal-associated protists.

Bass D, Silberman JD, Brown MW, Pearce RA, Tice AK, Jousset A, Geisen S, Hartikainen H.

Environ Microbiol. 2016 May;18(5):1604-19. doi: 10.1111/1462-2920.13235. Epub 2016 Apr 7.


Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health.

Wei Z, Yang T, Friman VP, Xu Y, Shen Q, Jousset A.

Nat Commun. 2015 Sep 24;6:8413. doi: 10.1038/ncomms9413.


A new family of secreted toxins in pathogenic Neisseria species.

Jamet A, Jousset AB, Euphrasie D, Mukorako P, Boucharlat A, Ducousso A, Charbit A, Nassif X.

PLoS Pathog. 2015 Jan 8;11(1):e1004592. doi: 10.1371/journal.ppat.1004592. eCollection 2015 Jan.


Biodiversity and species identity shape the antifungal activity of bacterial communities.

Jousset A, Becker J, Chatterjee S, Karlovsky P, Scheu S, Eisenhauer N.

Ecology. 2014 May;95(5):1184-90.


Full-Genome Sequence of the Plant Growth-Promoting Bacterium Pseudomonas protegens CHA0.

Jousset A, Schuldes J, Keel C, Maurhofer M, Daniel R, Scheu S, Thuermer A.

Genome Announc. 2014 Apr 24;2(2). pii: e00322-14. doi: 10.1128/genomeA.00322-14.


The freshwater sponge Ephydatia fluviatilis harbours diverse Pseudomonas species (Gammaproteobacteria, Pseudomonadales) with broad-spectrum antimicrobial activity.

Keller-Costa T, Jousset A, van Overbeek L, van Elsas JD, Costa R.

PLoS One. 2014 Feb 12;9(2):e88429. doi: 10.1371/journal.pone.0088429. eCollection 2014.

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