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Items: 26

1.

In cell mutational interference mapping experiment (in cell MIME) identifies the 5' polyadenylation signal as a dual regulator of HIV-1 genomic RNA production and packaging.

Smyth RP, Smith MR, Jousset AC, Despons L, Laumond G, Decoville T, Cattenoz P, Moog C, Jossinet F, Mougel M, Paillart JC, von Kleist M, Marquet R.

Nucleic Acids Res. 2018 May 18;46(9):e57. doi: 10.1093/nar/gky152.

2.

Transient compartmentalization of RNA replicators prevents extinction due to parasites.

Matsumura S, Kun Á, Ryckelynck M, Coldren F, Szilágyi A, Jossinet F, Rick C, Nghe P, Szathmáry E, Griffiths AD.

Science. 2016 Dec 9;354(6317):1293-1296.

PMID:
27940874
3.

Genome engineering in the yeast pathogen Candida glabrata using the CRISPR-Cas9 system.

Enkler L, Richer D, Marchand AL, Ferrandon D, Jossinet F.

Sci Rep. 2016 Oct 21;6:35766. doi: 10.1038/srep35766.

4.

Quantitative and predictive model of kinetic regulation by E. coli TPP riboswitches.

Guedich S, Puffer-Enders B, Baltzinger M, Hoffmann G, Da Veiga C, Jossinet F, Thore S, Bec G, Ennifar E, Burnouf D, Dumas P.

RNA Biol. 2016;13(4):373-90. doi: 10.1080/15476286.2016.1142040. Epub 2016 Mar 1.

5.

Elaborate uORF/IRES features control expression and localization of human glycyl-tRNA synthetase.

Alexandrova J, Paulus C, Rudinger-Thirion J, Jossinet F, Frugier M.

RNA Biol. 2015;12(12):1301-13. doi: 10.1080/15476286.2015.1086866.

6.

Mutational interference mapping experiment (MIME) for studying RNA structure and function.

Smyth RP, Despons L, Huili G, Bernacchi S, Hijnen M, Mak J, Jossinet F, Weixi L, Paillart JC, von Kleist M, Marquet R.

Nat Methods. 2015 Sep;12(9):866-72. doi: 10.1038/nmeth.3490. Epub 2015 Aug 3.

PMID:
26237229
7.

Preface.

Jossinet F, Ponty Y, Waldispühl J.

J Comput Biol. 2015 Mar;22(3):189. doi: 10.1089/cmb.2015.010P. No abstract available.

PMID:
25768234
8.

Specific recognition of the HIV-1 genomic RNA by the Gag precursor.

Abd El-Wahab EW, Smyth RP, Mailler E, Bernacchi S, Vivet-Boudou V, Hijnen M, Jossinet F, Mak J, Paillart JC, Marquet R.

Nat Commun. 2014 Jul 2;5:4304. doi: 10.1038/ncomms5304.

PMID:
24986025
9.

A universal RNA structural motif docking the elbow of tRNA in the ribosome, RNAse P and T-box leaders.

Lehmann J, Jossinet F, Gautheret D.

Nucleic Acids Res. 2013 May 1;41(10):5494-502. doi: 10.1093/nar/gkt219. Epub 2013 Apr 10.

10.

High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome.

Hashem Y, des Georges A, Fu J, Buss SN, Jossinet F, Jobe A, Zhang Q, Liao HY, Grassucci RA, Bajaj C, Westhof E, Madison-Antenucci S, Frank J.

Nature. 2013 Feb 21;494(7437):385-9. doi: 10.1038/nature11872. Epub 2013 Feb 10.

11.

Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.

Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Söding J, Westhof E, Wilson DN, Beckmann R.

Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19748-53. doi: 10.1073/pnas.1009999107. Epub 2010 Oct 27.

12.

Localization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome.

Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Söding J, Westhof E, Wilson DN, Beckmann R.

Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19754-9. doi: 10.1073/pnas.1010005107. Epub 2010 Oct 25.

13.

Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels.

Jossinet F, Ludwig TE, Westhof E.

Bioinformatics. 2010 Aug 15;26(16):2057-9. doi: 10.1093/bioinformatics/btq321. Epub 2010 Jun 18.

14.

Predicting and modeling RNA architecture.

Westhof E, Masquida B, Jossinet F.

Cold Spring Harb Perspect Biol. 2011 Feb 1;3(2). pii: a003632. doi: 10.1101/cshperspect.a003632. Review.

15.

Visualization of macromolecular structures.

O'Donoghue SI, Goodsell DS, Frangakis AS, Jossinet F, Laskowski RA, Nilges M, Saibil HR, Schafferhans A, Wade RC, Westhof E, Olson AJ.

Nat Methods. 2010 Mar;7(3 Suppl):S42-55. doi: 10.1038/nmeth.1427. Epub 2010 Mar 1. Review.

PMID:
20195256
16.

Visualization of multiple alignments, phylogenies and gene family evolution.

Procter JB, Thompson J, Letunic I, Creevey C, Jossinet F, Barton GJ.

Nat Methods. 2010 Mar;7(3 Suppl):S16-25. doi: 10.1038/nmeth.1434. Review.

PMID:
20195253
17.

Base pairing constraints drive structural epistasis in ribosomal RNA sequences.

Dutheil JY, Jossinet F, Westhof E.

Mol Biol Evol. 2010 Aug;27(8):1868-76. doi: 10.1093/molbev/msq069. Epub 2010 Mar 8.

PMID:
20211929
18.

Exploring RNA structure by integrative molecular modelling.

Masquida B, Beckert B, Jossinet F.

N Biotechnol. 2010 Jul 31;27(3):170-83. doi: 10.1016/j.nbt.2010.02.022. Epub 2010 Mar 3. Review.

PMID:
20206310
19.

Structure of monomeric yeast and mammalian Sec61 complexes interacting with the translating ribosome.

Becker T, Bhushan S, Jarasch A, Armache JP, Funes S, Jossinet F, Gumbart J, Mielke T, Berninghausen O, Schulten K, Westhof E, Gilmore R, Mandon EC, Beckmann R.

Science. 2009 Dec 4;326(5958):1369-73. doi: 10.1126/science.1178535. Epub 2009 Oct 29.

20.

The RNA structure alignment ontology.

Brown JW, Birmingham A, Griffiths PE, Jossinet F, Kachouri-Lafond R, Knight R, Lang BF, Leontis N, Steger G, Stombaugh J, Westhof E.

RNA. 2009 Sep;15(9):1623-31. doi: 10.1261/rna.1601409. Epub 2009 Jul 21.

21.

RNA structure: bioinformatic analysis.

Jossinet F, Ludwig TE, Westhof E.

Curr Opin Microbiol. 2007 Jun;10(3):279-85. Epub 2007 Jun 4. Review.

PMID:
17548241
22.

The RNA Ontology Consortium: an open invitation to the RNA community.

Leontis NB, Altman RB, Berman HM, Brenner SE, Brown JW, Engelke DR, Harvey SC, Holbrook SR, Jossinet F, Lewis SE, Major F, Mathews DH, Richardson JS, Williamson JR, Westhof E.

RNA. 2006 Apr;12(4):533-41. Epub 2006 Feb 16.

23.

Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structure.

Jossinet F, Westhof E.

Bioinformatics. 2005 Aug 1;21(15):3320-1. Epub 2005 May 19.

PMID:
15905274
24.

Tools for the automatic identification and classification of RNA base pairs.

Yang H, Jossinet F, Leontis N, Chen L, Westbrook J, Berman H, Westhof E.

Nucleic Acids Res. 2003 Jul 1;31(13):3450-60.

25.

Identification of the in vitro HIV-2/SIV RNA dimerization site reveals striking differences with HIV-1.

Jossinet F, Lodmell JS, Ehresmann C, Ehresmann B, Marquet R.

J Biol Chem. 2001 Feb 23;276(8):5598-604. Epub 2000 Nov 22.

26.

Dimerization of HIV-1 genomic RNA of subtypes A and B: RNA loop structure and magnesium binding.

Jossinet F, Paillart JC, Westhof E, Hermann T, Skripkin E, Lodmell JS, Ehresmann C, Ehresmann B, Marquet R.

RNA. 1999 Sep;5(9):1222-34.

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