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IMPRes-Pro: A high dimensional multiomics integration method for in silico hypothesis generation.

Jiang Y, Wang D, Xu D, Joshi T.

Methods. 2019 Jun 17. pii: S1046-2023(19)30087-8. doi: 10.1016/j.ymeth.2019.06.013. [Epub ahead of print]


Early genistein exposure of California mice and gut microbiota-brain axis effects.

Marshall BL, Liu Y, Farrington MJ, Mao J, Helferich W, Schenk AK, Bivens NJ, Sarma SJ, Lei Z, Sumner LW, Joshi T, Rosenfeld CS.

J Endocrinol. 2019 Jun 1. pii: JOE-19-0214.R1. doi: 10.1530/JOE-19-0214. [Epub ahead of print]


A Dynamic Programming Approach to Integrate Gene Expression Data and Network Information for Pathway Model Generation.

Jiang Y, Liang Y, Wang D, Xu D, Joshi T.

Bioinformatics. 2019 Jun 6. pii: btz467. doi: 10.1093/bioinformatics/btz467. [Epub ahead of print]


Advances in Nuclear Radiation Sensing: Enabling 3-D Gamma-Ray Vision.

Vetter K, Barnowski R, Cates JW, Haefner A, Joshi THY, Pavlovsky R, Quiter BJ.

Sensors (Basel). 2019 Jun 4;19(11). pii: E2541. doi: 10.3390/s19112541.


12-Hydroxy-jasmonoyl-L-isoleucine is an active jasmonate that signals through CORONATINE INSENSITIVE 1 and contributes to the wound response in Arabidopsis.

Poudel AN, Holtsclaw RE, Kimberlin A, Sen S, Zeng S, Joshi T, Lei Z, Sumner LW, Singh K, Matsuura H, Koo AJ.

Plant Cell Physiol. 2019 May 31. pii: pcz109. doi: 10.1093/pcp/pcz109. [Epub ahead of print]


Transcriptomics Analysis Reveals New Insights into the Roles of Notch1 Signaling on Macrophage Polarization.

Hans CP, Sharma N, Sen S, Zeng S, Dev R, Jiang Y, Mahajan A, Joshi T.

Sci Rep. 2019 May 29;9(1):7999. doi: 10.1038/s41598-019-44266-4.


Synthesis, Structural Characterization and Photodecarbonylation Study of a Dicarbonyl Ruthenium(II)-Bisquinoline Complex.

Kubeil M, Joshi T, Wood BR, Stephan H.

ChemistryOpen. 2019 May 22;8(5):637-642. doi: 10.1002/open.201900111. eCollection 2019 May.


Silencing AXL by covalent siRNA-gelatin-antibody nanoconjugate inactivates mTOR/EMT pathway and stimulates p53 for TKI sensitization in NSCLC.

Suresh D, Zambre A, Mukherjee S, Ghoshdastidar S, Jiang Y, Joshi T, Upendran A, Kannan R.

Nanomedicine. 2019 May 12. pii: S1549-9634(19)30091-7. doi: 10.1016/j.nano.2019.04.010. [Epub ahead of print]


Impact of a Mobilized Stress Management Program (Pep-Pal) for Caregivers of Oncology Patients: Mixed-Methods Study.

Carr AL, Jones J, Mikulich Gilbertson S, Laudenslager ML, Kutner JS, Kilbourn K, Sannes TS, Brewer BW, Kolva E, Joshi T, Amoyal Pensak N.

JMIR Cancer. 2019 May 3;5(1):e11406. doi: 10.2196/11406.


A novel and easy technique for restoring grossly decayed mandibular molar with a modified cast-post.

Joshi TJ, Mistry G, Shetty D, Shetty O, Singh S, Rumde S.

Pan Afr Med J. 2018 Oct 22;31:129. doi: 10.11604/pamj.2018.31.129.14394. eCollection 2018.


Impact of Phosphodiesterase 4 Inhibition on the Operational Efficacy, Response Maxima, and Kinetics of Indacaterol-Induced Gene Expression Changes in BEAS-2B Airway Epithelial Cells: A Global Transcriptomic Analysis.

Joshi R, Yan D, Hamed O, Mostafa MM, Joshi T, Newton R, Giembycz MA.

Mol Pharmacol. 2019 Jul;96(1):56-72. doi: 10.1124/mol.118.115311. Epub 2019 Apr 29.


Length-Dependent Evolution of Type II Heterojunctions in Bottom-Up-Synthesized Graphene Nanoribbons.

Rizzo DJ, Wu M, Tsai HZ, Marangoni T, Durr RA, Omrani AA, Liou F, Bronner C, Joshi T, Nguyen GD, Rodgers GF, Choi WW, Jørgensen JH, Fischer FR, Louie SG, Crommie MF.

Nano Lett. 2019 May 8;19(5):3221-3228. doi: 10.1021/acs.nanolett.9b00758. Epub 2019 Apr 24.


Asbestos in commercial indian talc.

Fitzgerald S, Harty E, Joshi TK, Frank AL.

Am J Ind Med. 2019 May;62(5):385-392. doi: 10.1002/ajim.22969. Epub 2019 Mar 27.


Targeting AMPK signaling pathway by natural products for treatment of diabetes mellitus and its complications.

Joshi T, Singh AK, Haratipour P, Sah AN, Pandey AK, Naseri R, Juyal V, Farzaei MH.

J Cell Physiol. 2019 Aug;234(10):17212-17231. doi: 10.1002/jcp.28528. Epub 2019 Mar 27. Review.


Local Electronic Structure of Molecular Heterojunctions in a Single-Layer 2D Covalent Organic Framework.

Joshi T, Chen C, Li H, Diercks CS, Wang G, Waller PJ, Li H, Bredas JL, Yaghi OM, Crommie MF.

Adv Mater. 2019 Jan;31(3):e1805941. doi: 10.1002/adma.201805941. Epub 2018 Nov 28.


The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family.

Galli M, Khakhar A, Lu Z, Chen Z, Sen S, Joshi T, Nemhauser JL, Schmitz RJ, Gallavotti A.

Nat Commun. 2018 Oct 30;9(1):4526. doi: 10.1038/s41467-018-06977-6.


Phosphate Deficiency Negatively Affects Early Steps of the Symbiosis between Common Bean and Rhizobia.

Isidra-Arellano MC, Reyero-Saavedra MDR, Sánchez-Correa MDS, Pingault L, Sen S, Joshi T, Girard L, Castro-Guerrero NA, Mendoza-Cozatl DG, Libault M, Valdés-López O.

Genes (Basel). 2018 Oct 15;9(10). pii: E498. doi: 10.3390/genes9100498.


Towards Utilising Photocrosslinking of Polydiacetylenes for the Preparation of "Stealth" Upconverting Nanoparticles.

Nsubuga A, Zarschler K, Sgarzi M, Graham B, Stephan H, Joshi T.

Angew Chem Int Ed Engl. 2018 Dec 3;57(49):16036-16040. doi: 10.1002/anie.201811003. Epub 2018 Nov 7.


Parvovirus minute virus of mice interacts with sites of cellular DNA damage to establish and amplify its lytic infection.

Majumder K, Wang J, Boftsi M, Fuller MS, Rede JE, Joshi T, Pintel DJ.

Elife. 2018 Jul 20;7. pii: e37750. doi: 10.7554/eLife.37750.


Evidence for plant-derived xenomiRs based on a large-scale analysis of public small RNA sequencing data from human samples.

Zhao Q, Liu Y, Zhang N, Hu M, Zhang H, Joshi T, Xu D.

PLoS One. 2018 Jun 27;13(6):e0187519. doi: 10.1371/journal.pone.0187519. eCollection 2018.


Concentration Dependence of Dopant Electronic Structure in Bottom-up Graphene Nanoribbons.

Pedramrazi Z, Chen C, Zhao F, Cao T, Nguyen GD, Omrani AA, Tsai HZ, Cloke RR, Marangoni T, Rizzo DJ, Joshi T, Bronner C, Choi WW, Fischer FR, Louie SG, Crommie MF.

Nano Lett. 2018 Jun 13;18(6):3550-3556. doi: 10.1021/acs.nanolett.8b00651. Epub 2018 Jun 4.


Prevention-intervention strategies to reduce exposure to e-waste.

Heacock M, Trottier B, Adhikary S, Asante KA, Basu N, Brune MN, Caravanos J, Carpenter D, Cazabon D, Chakraborty P, Chen A, Barriga FD, Ericson B, Fobil J, Haryanto B, Huo X, Joshi TK, Landrigan P, Lopez A, Magalini F, Navasumrit P, Pascale A, Sambandam S, Aslia Kamil US, Sly L, Sly P, Suk A, Suraweera I, Tamin R, Vicario E, Suk W.

Rev Environ Health. 2018 Jun 27;33(2):219-228. doi: 10.1515/reveh-2018-0014.


Understanding genetic control of root system architecture in soybean: Insights into the genetic basis of lateral root number.

Prince SJ, Valliyodan B, Ye H, Yang M, Tai S, Hu W, Murphy M, Durnell LA, Song L, Joshi T, Liu Y, Van de Velde J, Vandepoele K, Grover Shannon J, Nguyen HT.

Plant Cell Environ. 2019 Jan;42(1):212-229. doi: 10.1111/pce.13333. Epub 2018 Jun 15.


Facile preparation of multifunctionalisable 'stealth' upconverting nanoparticles for biomedical applications.

Nsubuga A, Sgarzi M, Zarschler K, Kubeil M, Hübner R, Steudtner R, Graham B, Joshi T, Stephan H.

Dalton Trans. 2018 Jul 14;47(26):8595-8604. doi: 10.1039/c8dt00241j. Epub 2018 Apr 25.


Glycaemic optimization for patients with cardiac disease-A before-and-after study.

Joshi T, Pullen SJ, Gebuehr A, Oldmeadow C, Attia JR, Acharya SH.

Int J Clin Pract. 2018 Apr;72(4):e13086. doi: 10.1111/ijcp.13086. Epub 2018 Apr 19.


Analysis of the Indacaterol-Regulated Transcriptome in Human Airway Epithelial Cells Implicates Gene Expression Changes in the Adverse and Therapeutic Effects of β2-Adrenoceptor Agonists.

Yan D, Hamed O, Joshi T, Mostafa MM, Jamieson KC, Joshi R, Newton R, Giembycz MA.

J Pharmacol Exp Ther. 2018 Jul;366(1):220-236. doi: 10.1124/jpet.118.249292. Epub 2018 Apr 13.


Gene expression profiles of ion channels and receptors in mouse resistance arteries: Effects of cell type, vascular bed, and age.

Boerman EM, Sen S, Shaw RL, Joshi T, Segal SS.

Microcirculation. 2018 May;25(4):e12452. doi: 10.1111/micc.12452.


Capturing the Dynamics of a Hybrid Multiscale Cancer Model with a Continuum Model.

Joshi TV, Avitabile D, Owen MR.

Bull Math Biol. 2018 Jun;80(6):1435-1475. doi: 10.1007/s11538-018-0406-6. Epub 2018 Mar 16.


Changes in iron availability in Arabidopsis are rapidly sensed in the leaf vasculature and impaired sensing leads to opposite transcriptional programs in leaves and roots.

Khan MA, Castro-Guerrero NA, McInturf SA, Nguyen NT, Dame AN, Wang J, Bindbeutel RK, Joshi T, Jurisson SS, Nusinow DA, Mendoza-Cozatl DG.

Plant Cell Environ. 2018 Oct;41(10):2263-2276. doi: 10.1111/pce.13192. Epub 2018 Jun 19.


Rapid Synthesis of Sub-10 nm Hexagonal NaYF4-Based Upconverting Nanoparticles using Therminol® 66.

Hesse J, Klier DT, Sgarzi M, Nsubuga A, Bauer C, Grenzer J, Hübner R, Wislicenus M, Joshi T, Kumke MU, Stephan H.

ChemistryOpen. 2018 Jan 25;7(2):159-168. doi: 10.1002/open.201700186. eCollection 2018 Feb.


Relationship of antioxidant system and reactive oxygen species with clinical semen parameters in infertile men.

Tomar G, Joshi T, Varghes A, Sasidharan S, Kural MR.

J Family Med Prim Care. 2017 Jul-Sep;6(3):574-577. doi: 10.4103/2249-4863.222051.


No appendix necessary: Fecal transplants and antibiotics can resolve Clostridium difficile infection.

Joshi T, Elderd BD, Abbott KC.

J Theor Biol. 2018 Apr 7;442:139-148. doi: 10.1016/j.jtbi.2018.01.013.


Spectroscopic Studies on Photoinduced Reactions of the Anticancer Prodrug, trans,trans,trans-[Pt(N3 )2 (OH)2 (py)2 ].

Vernooij RR, Joshi T, Horbury MD, Graham B, Izgorodina EI, Stavros VG, Sadler PJ, Spiccia L, Wood BR.

Chemistry. 2018 Apr 17;24(22):5790-5803. doi: 10.1002/chem.201705349. Epub 2018 Feb 5.


Local Electronic Structure of a Single-Layer Porphyrin-Containing Covalent Organic Framework.

Chen C, Joshi T, Li H, Chavez AD, Pedramrazi Z, Liu PN, Li H, Dichtel WR, Bredas JL, Crommie MF.

ACS Nano. 2018 Jan 23;12(1):385-391. doi: 10.1021/acsnano.7b06529. Epub 2017 Dec 26.


Prion seeding activity and infectivity in skin samples from patients with sporadic Creutzfeldt-Jakob disease.

Orrú CD, Yuan J, Appleby BS, Li B, Li Y, Winner D, Wang Z, Zhan YA, Rodgers M, Rarick J, Wyza RE, Joshi T, Wang GX, Cohen ML, Zhang S, Groveman BR, Petersen RB, Ironside JW, Quiñones-Mateu ME, Safar JG, Kong Q, Caughey B, Zou WQ.

Sci Transl Med. 2017 Nov 22;9(417). pii: eaam7785. doi: 10.1126/scitranslmed.aam7785.


MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction.

Wang D, Zeng S, Xu C, Qiu W, Liang Y, Joshi T, Xu D.

Bioinformatics. 2017 Dec 15;33(24):3909-3916. doi: 10.1093/bioinformatics/btx496.


Adsorption combined with superconducting high gradient magnetic separation technique used for removal of arsenic and antimony.

Qi Z, Joshi TP, Liu R, Li Y, Liu H, Qu J.

J Hazard Mater. 2018 Feb 5;343:36-48. doi: 10.1016/j.jhazmat.2017.09.007. Epub 2017 Sep 7.


Correction of: Development of a Web-Based Intervention for Addressing Distress in Caregivers of Patients Receiving Stem Cell Transplants: Formative Evaluation With Qualitative Interviews and Focus Groups.

Pensak NA, Joshi T, Simoneau T, Kilbourn K, Carr A, Kutner J, Laudenslager ML.

JMIR Res Protoc. 2017 Aug 15;6(8):e130. doi: 10.2196/resprot.8322.


A novel prototype 3/5 laparoscopic needle driver: A validation study with conventional laparoscopic needle driver.

Ganpule AP, Deshmukh CS, Joshi T.

J Minim Access Surg. 2018 Jan-Mar;14(1):83-86. doi: 10.4103/jmas.JMAS_191_16.


Development of a Web-Based Intervention for Addressing Distress in Caregivers of Patients Receiving Stem Cell Transplants: Formative Evaluation With Qualitative Interviews and Focus Groups

Pensak NA, Joshi T, Simoneau T, Kilbourn K, Carr A, Kutner J, Laudenslager ML.

JMIR Res Protoc. 2017 Jun 22;6(6):e120. doi: 10.2196/resprot.7075. Erratum in: JMIR Res Protoc. 2017 Aug 15;6(8):e130.


The removal efficiency and insight into the mechanism of para arsanilic acid adsorption on Fe-Mn framework.

Joshi TP, Zhang G, Koju R, Qi Z, Liu R, Liu H, Qu J.

Sci Total Environ. 2017 Dec 1;601-602:713-722. doi: 10.1016/j.scitotenv.2017.05.219. Epub 2017 Jun 1.


Coupled One-Dimensional Plasmons and Two-Dimensional Phonon Polaritons in Hybrid Silver Nanowire/Silicon Carbide Structures.

Joshi T, Kang JH, Jiang L, Wang S, Tarigo T, Lyu T, Kahn S, Shi Z, Shen YR, Crommie MF, Wang F.

Nano Lett. 2017 Jun 14;17(6):3662-3667. doi: 10.1021/acs.nanolett.7b00845. Epub 2017 May 3.


Plant-derived phosphocholine facilitates cellular uptake of anti-pulmonary fibrotic HJT-sRNA-m7.

Du J, Liang Z, Xu J, Zhao Y, Li X, Zhang Y, Zhao D, Chen R, Liu Y, Joshi T, Chang J, Wang Z, Zhang Y, Zhu J, Liu Q, Xu D, Jiang C.

Sci China Life Sci. 2019 Mar;62(3):309-320. doi: 10.1007/s11427-017-9026-7. Epub 2017 Mar 31.


Pyranocarbazoles from Murraya koenigii (L.) Spreng. as antimicrobial agents.

Joshi T, Jain T, Mahar R, Singh SK, Srivastava P, Shukla SK, Mishra DK, Bhatta RS, Banerjee D, Kanojiya S.

Nat Prod Res. 2018 Feb;32(4):430-434. doi: 10.1080/14786419.2017.1308363. Epub 2017 Apr 3.


Transformation of para arsanilic acid by manganese oxide: Adsorption, oxidation, and influencing factors.

Joshi TP, Zhang G, Cheng H, Liu R, Liu H, Qu J.

Water Res. 2017 Jun 1;116:126-134. doi: 10.1016/j.watres.2017.03.028. Epub 2017 Mar 18.


Comments on "Factitious disorder (Munchausen's syndrome) in oncology: Case report and literature review" by Baig and colleagues (2015).

Nguyen DH, Joshi T, Williams C.

Psychooncology. 2017 Mar;26(3):412. doi: 10.1002/pon.4369. No abstract available.


The duration of intrapartum maternal hyperglycaemia predicts neonatal hypoglycaemia in women with pre-existing diabetes.

Joshi T, Oldmeadow C, Attia J, Wynne K.

Diabet Med. 2017 May;34(5):725-731. doi: 10.1111/dme.13337. Epub 2017 Mar 8.


Synthesis of Ce(III)-doped Fe3O4 magnetic particles for efficient removal of antimony from aqueous solution.

Qi Z, Joshi TP, Liu R, Liu H, Qu J.

J Hazard Mater. 2017 May 5;329:193-204. doi: 10.1016/j.jhazmat.2017.01.007. Epub 2017 Jan 7.


Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs.

Hossain MS, Kawakatsu T, Kim KD, Zhang N, Nguyen CT, Khan SM, Batek JM, Joshi T, Schmutz J, Grimwood J, Schmitz RJ, Xu D, Jackson SA, Ecker JR, Stacey G.

New Phytol. 2017 Apr;214(2):808-819. doi: 10.1111/nph.14421. Epub 2017 Jan 20.


Water-deficit-induced changes in transcription factor expression in maize seedlings.

Seeve CM, Cho IJ, Hearne LB, Srivastava GP, Joshi T, Smith DO, Sharp RE, Oliver MJ.

Plant Cell Environ. 2017 May;40(5):686-701. doi: 10.1111/pce.12891. Epub 2017 Jan 20.


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