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Items: 33

1.

Probing the contribution of individual polypeptide GalNAc-transferase isoforms to the O-glycoproteome by inducible expression in isogenic cell lines.

Hintze J, Ye Z, Narimatsu Y, Madsen TD, Joshi HJ, Goth CK, Linstedt A, Bachert C, Mandel U, Bennett EP, Vakhrushev SY, Schjoldager KT.

J Biol Chem. 2018 Dec 7;293(49):19064-19077. doi: 10.1074/jbc.RA118.004516. Epub 2018 Oct 16.

PMID:
30327431
2.

Viral glycoproteomes: technologies for characterization and outlook for vaccine design.

Bagdonaite I, Vakhrushev SY, Joshi HJ, Wandall HH.

FEBS Lett. 2018 Dec;592(23):3898-3920. doi: 10.1002/1873-3468.13177. Epub 2018 Jul 12. Review.

PMID:
29961944
3.

TAILS N-terminomics and proteomics reveal complex regulation of proteolytic cleavage by O-glycosylation.

King SL, Goth CK, Eckhard U, Joshi HJ, Haue AD, Vakhrushev SY, Schjoldager KT, Overall CM, Wandall HH.

J Biol Chem. 2018 May 18;293(20):7629-7644. doi: 10.1074/jbc.RA118.001978. Epub 2018 Mar 28.

PMID:
29593093
4.

Glycosyltransferase genes that cause monogenic congenital disorders of glycosylation are distinct from glycosyltransferase genes associated with complex diseases.

Joshi HJ, Hansen L, Narimatsu Y, Freeze HH, Henrissat B, Bennett E, Wandall HH, Clausen H, Schjoldager KT.

Glycobiology. 2018 May 1;28(5):284-294. doi: 10.1093/glycob/cwy015.

PMID:
29579191
5.

Fine-Tuning Limited Proteolysis: A Major Role for Regulated Site-Specific O-Glycosylation.

Goth CK, Vakhrushev SY, Joshi HJ, Clausen H, Schjoldager KT.

Trends Biochem Sci. 2018 Apr;43(4):269-284. doi: 10.1016/j.tibs.2018.02.005. Epub 2018 Mar 2. Review.

PMID:
29506880
6.

SnapShot: O-Glycosylation Pathways across Kingdoms.

Joshi HJ, Narimatsu Y, Schjoldager KT, Tytgat HLP, Aebi M, Clausen H, Halim A.

Cell. 2018 Jan 25;172(3):632-632.e2. doi: 10.1016/j.cell.2018.01.016. Review.

7.

A validated gRNA library for CRISPR/Cas9 targeting of the human glycosyltransferase genome.

Narimatsu Y, Joshi HJ, Yang Z, Gomes C, Chen YH, Lorenzetti FC, Furukawa S, Schjoldager KT, Hansen L, Clausen H, Bennett EP, Wandall HH.

Glycobiology. 2018 May 1;28(5):295-305. doi: 10.1093/glycob/cwx101.

PMID:
29315387
8.

Characterizing the O-glycosylation landscape of human plasma, platelets, and endothelial cells.

King SL, Joshi HJ, Schjoldager KT, Halim A, Madsen TD, Dziegiel MH, Woetmann A, Vakhrushev SY, Wandall HH.

Blood Adv. 2017 Feb 23;1(7):429-442. doi: 10.1182/bloodadvances.2016002121. eCollection 2017 Feb 28.

9.

GlycoDomainViewer: a bioinformatics tool for contextual exploration of glycoproteomes.

Joshi HJ, Jørgensen A, Schjoldager KT, Halim A, Dworkin LA, Steentoft C, Wandall HH, Clausen H, Vakhrushev SY.

Glycobiology. 2018 Mar 1;28(3):131-136. doi: 10.1093/glycob/cwx104.

PMID:
29267884
10.

Discovery of an O-mannosylation pathway selectively serving cadherins and protocadherins.

Larsen ISB, Narimatsu Y, Joshi HJ, Siukstaite L, Harrison OJ, Brasch J, Goodman KM, Hansen L, Shapiro L, Honig B, Vakhrushev SY, Clausen H, Halim A.

Proc Natl Acad Sci U S A. 2017 Oct 17;114(42):11163-11168. doi: 10.1073/pnas.1708319114. Epub 2017 Oct 2.

11.

Mammalian O-mannosylation of cadherins and plexins is independent of protein O-mannosyltransferases 1 and 2.

Larsen ISB, Narimatsu Y, Joshi HJ, Yang Z, Harrison OJ, Brasch J, Shapiro L, Honig B, Vakhrushev SY, Clausen H, Halim A.

J Biol Chem. 2017 Jul 7;292(27):11586-11598. doi: 10.1074/jbc.M117.794487. Epub 2017 May 16.

12.

Global Mapping of O-Glycosylation of Varicella Zoster Virus, Human Cytomegalovirus, and Epstein-Barr Virus.

Bagdonaite I, Nordén R, Joshi HJ, King SL, Vakhrushev SY, Olofsson S, Wandall HH.

J Biol Chem. 2016 Jun 3;291(23):12014-28. doi: 10.1074/jbc.M116.721746. Epub 2016 Apr 15.

13.

Mapping the O-Mannose Glycoproteome in Saccharomyces cerevisiae.

Neubert P, Halim A, Zauser M, Essig A, Joshi HJ, Zatorska E, Larsen IS, Loibl M, Castells-Ballester J, Aebi M, Clausen H, Strahl S.

Mol Cell Proteomics. 2016 Apr;15(4):1323-37. doi: 10.1074/mcp.M115.057505. Epub 2016 Jan 13.

14.

Discovery of a nucleocytoplasmic O-mannose glycoproteome in yeast.

Halim A, Larsen IS, Neubert P, Joshi HJ, Petersen BL, Vakhrushev SY, Strahl S, Clausen H.

Proc Natl Acad Sci U S A. 2015 Dec 22;112(51):15648-53. doi: 10.1073/pnas.1511743112. Epub 2015 Dec 7.

15.

Deconstruction of O-glycosylation--GalNAc-T isoforms direct distinct subsets of the O-glycoproteome.

Schjoldager KT, Joshi HJ, Kong Y, Goth CK, King SL, Wandall HH, Bennett EP, Vakhrushev SY, Clausen H.

EMBO Rep. 2015 Dec;16(12):1713-22. doi: 10.15252/embr.201540796. Epub 2015 Nov 13.

16.

A strategy for O-glycoproteomics of enveloped viruses--the O-glycoproteome of herpes simplex virus type 1.

Bagdonaite I, Nordén R, Joshi HJ, Dabelsteen S, Nyström K, Vakhrushev SY, Olofsson S, Wandall HH.

PLoS Pathog. 2015 Apr 1;11(4):e1004784. doi: 10.1371/journal.ppat.1004784. eCollection 2015 Apr.

17.

Eukaryotic glycosylation: online methods for site prediction on protein sequences.

Joshi HJ, Gupta R.

Methods Mol Biol. 2015;1273:127-37. doi: 10.1007/978-1-4939-2343-4_9.

PMID:
25753707
18.

A glycogene mutation map for discovery of diseases of glycosylation.

Hansen L, Lind-Thomsen A, Joshi HJ, Pedersen NB, Have CT, Kong Y, Wang S, Sparso T, Grarup N, Vester-Christensen MB, Schjoldager K, Freeze HH, Hansen T, Pedersen O, Henrissat B, Mandel U, Clausen H, Wandall HH, Bennett EP.

Glycobiology. 2015 Feb;25(2):211-24. doi: 10.1093/glycob/cwu104. Epub 2014 Sep 28.

19.

Probing polypeptide GalNAc-transferase isoform substrate specificities by in vitro analysis.

Kong Y, Joshi HJ, Schjoldager KT, Madsen TD, Gerken TA, Vester-Christensen MB, Wandall HH, Bennett EP, Levery SB, Vakhrushev SY, Clausen H.

Glycobiology. 2015 Jan;25(1):55-65. doi: 10.1093/glycob/cwu089. Epub 2014 Aug 25.

20.

Managing the green proteomes for the next decade of plant research.

Carroll AW, Joshi HJ, Heazlewood JL.

Front Plant Sci. 2013 Dec 16;4:501. doi: 10.3389/fpls.2013.00501. eCollection 2013. No abstract available.

21.

MASCP gator: an overview of the Arabidopsis proteomic aggregation portal.

Mann GW, Calley PC, Joshi HJ, Heazlewood JL.

Front Plant Sci. 2013 Oct 23;4:411. doi: 10.3389/fpls.2013.00411. Review.

22.

Mining the O-mannose glycoproteome reveals cadherins as major O-mannosylated glycoproteins.

Vester-Christensen MB, Halim A, Joshi HJ, Steentoft C, Bennett EP, Levery SB, Vakhrushev SY, Clausen H.

Proc Natl Acad Sci U S A. 2013 Dec 24;110(52):21018-23. doi: 10.1073/pnas.1313446110. Epub 2013 Oct 7.

23.

Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.

Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H.

EMBO J. 2013 May 15;32(10):1478-88. doi: 10.1038/emboj.2013.79. Epub 2013 Apr 12.

24.

Proteome coverage of the model plant Arabidopsis thaliana: implications for shotgun proteomic studies.

Mann GW, Joshi HJ, Petzold CJ, Heazlewood JL.

J Proteomics. 2013 Feb 21;79:195-9. doi: 10.1016/j.jprot.2012.12.009. Epub 2012 Dec 23.

PMID:
23268116
25.

1001 Proteomes: a functional proteomics portal for the analysis of Arabidopsis thaliana accessions.

Joshi HJ, Christiansen KM, Fitz J, Cao J, Lipzen A, Martin J, Smith-Moritz AM, Pennacchio LA, Schackwitz WS, Weigel D, Heazlewood JL.

Bioinformatics. 2012 May 15;28(10):1303-6. doi: 10.1093/bioinformatics/bts133. Epub 2012 Mar 25.

PMID:
22451271
26.

An integrative approach to the identification of Arabidopsis and rice genes involved in xylan and secondary wall development.

Oikawa A, Joshi HJ, Rennie EA, Ebert B, Manisseri C, Heazlewood JL, Scheller HV.

PLoS One. 2010 Nov 23;5(11):e15481. doi: 10.1371/journal.pone.0015481.

27.

EUROCarbDB: An open-access platform for glycoinformatics.

von der Lieth CW, Freire AA, Blank D, Campbell MP, Ceroni A, Damerell DR, Dell A, Dwek RA, Ernst B, Fogh R, Frank M, Geyer H, Geyer R, Harrison MJ, Henrick K, Herget S, Hull WE, Ionides J, Joshi HJ, Kamerling JP, Leeflang BR, Lütteke T, Lundborg M, Maass K, Merry A, Ranzinger R, Rosen J, Royle L, Rudd PM, Schloissnig S, Stenutz R, Vranken WF, Widmalm G, Haslam SM.

Glycobiology. 2011 Apr;21(4):493-502. doi: 10.1093/glycob/cwq188. Epub 2010 Nov 23.

28.

MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data.

Joshi HJ, Hirsch-Hoffmann M, Baerenfaller K, Gruissem W, Baginsky S, Schmidt R, Schulze WX, Sun Q, van Wijk KJ, Egelhofer V, Wienkoop S, Weckwerth W, Bruley C, Rolland N, Toyoda T, Nakagami H, Jones AM, Briggs SP, Castleden I, Tanz SK, Millar AH, Heazlewood JL.

Plant Physiol. 2011 Jan;155(1):259-70. doi: 10.1104/pp.110.168195. Epub 2010 Nov 12.

29.

A rare case of plasma cell leukemia in a 35 year old.

Dosi RV, Ambaliya A, Patell RD, Joshi HJ.

Indian J Med Sci. 2010 Jun;64(6):281-4. doi: 10.4103/0019-5359.99607.

PMID:
22885320
30.

GlycoViewer: a tool for visual summary and comparative analysis of the glycome.

Joshi HJ, von der Lieth CW, Packer NH, Wilkins MR.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W667-70. doi: 10.1093/nar/gkq446. Epub 2010 May 25.

31.

Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de.

Toukach P, Joshi HJ, Ranzinger R, Knirel Y, von der Lieth CW.

Nucleic Acids Res. 2007 Jan;35(Database issue):D280-6.

32.

Development of a mass fingerprinting tool for automated interpretation of oligosaccharide fragmentation data.

Joshi HJ, Harrison MJ, Schulz BL, Cooper CA, Packer NH, Karlsson NG.

Proteomics. 2004 Jun;4(6):1650-64.

PMID:
15174134
33.

GlycoSuiteDB: a curated relational database of glycoprotein glycan structures and their biological sources. 2003 update.

Cooper CA, Joshi HJ, Harrison MJ, Wilkins MR, Packer NH.

Nucleic Acids Res. 2003 Jan 1;31(1):511-3.

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