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Development of Daptomycin Susceptibility Breakpoints for Enterococcus faecium and Revision of the Breakpoints for other Enterococcal species by the Clinical and Laboratory Standards Institute.

Satlin MJ, Nicolau DP, Humphries RM, Kuti JL, Campeau SA, Lewis JS, Weinstein MP, Jorgensen JH; CLSI Subcommittee on Antimicrobial Susceptibility Testing and Ad Hoc Working Group on Revision of Daptomycin Enterococcal Breakpoints.

Clin Infect Dis. 2019 Aug 26. pii: ciz845. doi: 10.1093/cid/ciz845. [Epub ahead of print]


Length-Dependent Evolution of Type II Heterojunctions in Bottom-Up-Synthesized Graphene Nanoribbons.

Rizzo DJ, Wu M, Tsai HZ, Marangoni T, Durr RA, Omrani AA, Liou F, Bronner C, Joshi T, Nguyen GD, Rodgers GF, Choi WW, Jørgensen JH, Fischer FR, Louie SG, Crommie MF.

Nano Lett. 2019 May 8;19(5):3221-3228. doi: 10.1021/acs.nanolett.9b00758. Epub 2019 Apr 24.


Exciting H2 Molecules for Graphene Functionalization.

Kyhl L, Bisson R, Balog R, Groves MN, Kolsbjerg EL, Cassidy AM, Jørgensen JH, Halkjær S, Miwa JA, Grubišić Čabo A, Angot T, Hofmann P, Arman MA, Urpelainen S, Lacovig P, Bignardi L, Bluhm H, Knudsen J, Hammer B, Hornekaer L.

ACS Nano. 2018 Jan 23;12(1):513-520. doi: 10.1021/acsnano.7b07079. Epub 2018 Jan 5.


Erratum: Self-assembly of ordered graphene nanodot arrays.

Camilli L, Jørgensen JH, Tersoff J, Stoot AC, Balog R, Cassidy A, Sadowski JT, Bøggild P, Hornekær L.

Nat Commun. 2017 Oct 24;8(1):1155. doi: 10.1038/s41467-017-00725-y.


Self-assembly of ordered graphene nanodot arrays.

Camilli L, Jørgensen JH, Tersoff J, Stoot AC, Balog R, Cassidy A, Sadowski JT, Bøggild P, Hornekær L.

Nat Commun. 2017 Jun 29;8(1):47. doi: 10.1038/s41467-017-00042-4. Erratum in: Nat Commun. 2017 Oct 24;8(1):1155.


Symmetry-Driven Band Gap Engineering in Hydrogen Functionalized Graphene.

Jørgensen JH, Čabo AG, Balog R, Kyhl L, Groves MN, Cassidy AM, Bruix A, Bianchi M, Dendzik M, Arman MA, Lammich L, Pascual JI, Knudsen J, Hammer B, Hofmann P, Hornekaer L.

ACS Nano. 2016 Dec 27;10(12):10798-10807. doi: 10.1021/acsnano.6b04671. Epub 2016 Nov 17.


Comparative Genome Analysis of the Daptomycin-Resistant Streptococcus anginosus Strain J4206 Associated with Breakthrough Bacteremia.

Rahman M, Nguyen SV, McCullor KA, King CJ, Jorgensen JH, McShan WM.

Genome Biol Evol. 2016 Dec 31;8(11):3446-3459. doi: 10.1093/gbe/evw241.


Effectiveness of 13-valent pneumococcal conjugate vaccine for prevention of invasive pneumococcal disease in children in the USA: a matched case-control study.

Moore MR, Link-Gelles R, Schaffner W, Lynfield R, Holtzman C, Harrison LH, Zansky SM, Rosen JB, Reingold A, Scherzinger K, Thomas A, Guevara RE, Motala T, Eason J, Barnes M, Petit S, Farley MM, McGee L, Jorgensen JH, Whitney CG.

Lancet Respir Med. 2016 May;4(5):399-406. doi: 10.1016/S2213-2600(16)00052-7. Epub 2016 Mar 14.


Complete Genome Sequence of Streptococcus anginosus J4211, a Clinical Isolate.

Rahman M, Nguyen SV, McCullor KA, King CJ, Jorgensen JH, McShan WM.

Genome Announc. 2015 Dec 17;3(6). pii: e01440-15. doi: 10.1128/genomeA.01440-15.


Effect of use of 13-valent pneumococcal conjugate vaccine in children on invasive pneumococcal disease in children and adults in the USA: analysis of multisite, population-based surveillance.

Moore MR, Link-Gelles R, Schaffner W, Lynfield R, Lexau C, Bennett NM, Petit S, Zansky SM, Harrison LH, Reingold A, Miller L, Scherzinger K, Thomas A, Farley MM, Zell ER, Taylor TH Jr, Pondo T, Rodgers L, McGee L, Beall B, Jorgensen JH, Whitney CG.

Lancet Infect Dis. 2015 Mar;15(3):301-9. doi: 10.1016/S1473-3099(14)71081-3. Epub 2015 Feb 3.


Evidence for clonal expansion after antibiotic selection pressure: pneumococcal multilocus sequence types before and after mass azithromycin treatments.

Keenan JD, Klugman KP, McGee L, Vidal JE, Chochua S, Hawkins P, Cevallos V, Gebre T, Tadesse Z, Emerson PM, Jorgensen JH, Gaynor BD, Lietman TM.

J Infect Dis. 2015 Mar 15;211(6):988-94. doi: 10.1093/infdis/jiu552. Epub 2014 Oct 6.


Mitigation of methane emission from an old unlined landfill in Klintholm, Denmark using a passive biocover system.

Scheutz C, Pedersen RB, Petersen PH, Jørgensen JH, Ucendo IM, Mønster JG, Samuelsson J, Kjeldsen P.

Waste Manag. 2014 Jul;34(7):1179-90. doi: 10.1016/j.wasman.2014.03.015. Epub 2014 Apr 20.


Failure of clindamycin to eradicate infection with beta-hemolytic streptococci inducibly resistant to clindamycin in an animal model and in human infections.

Lewis JS 2nd, Lepak AJ, Thompson GR 3rd, Craig WA, Andes DR, Sabol-Dzintars KE, Jorgensen JH.

Antimicrob Agents Chemother. 2014;58(3):1327-31. doi: 10.1128/AAC.01877-13. Epub 2013 Dec 9.


Treatment of KPC-2 Enterobacter cloacae empyema with cefepime and levofloxacin.

Cardile AP, Briggs H, Burguete SR, Herrera M, Wickes BL, Jorgensen JH.

Diagn Microbiol Infect Dis. 2014 Feb;78(2):199-200. doi: 10.1016/j.diagmicrobio.2013.10.012. Epub 2013 Oct 22.


Rapid emergence of echinocandin resistance in Candida glabrata resulting in clinical and microbiologic failure.

Lewis JS 2nd, Wiederhold NP, Wickes BL, Patterson TF, Jorgensen JH.

Antimicrob Agents Chemother. 2013 Sep;57(9):4559-61. doi: 10.1128/AAC.01144-13. Epub 2013 Jul 1.


Invasive pneumococcal disease among children with and without sickle cell disease in the United States, 1998 to 2009.

Payne AB, Link-Gelles R, Azonobi I, Hooper WC, Beall BW, Jorgensen JH, Juni B, Moore M; Active Bacterial Core Surveillance Team.

Pediatr Infect Dis J. 2013 Dec;32(12):1308-12. doi: 10.1097/INF.0b013e3182a11808.


Development of doxycycline MIC and disk diffusion interpretive breakpoints and revision of tetracycline breakpoints for Streptococcus pneumoniae.

Dallas SD, McGee L, Limbago B, Patel JB, McElmeel ML, Fulcher LC, Lonsway DR, Jorgensen JH.

J Clin Microbiol. 2013 Jun;51(6):1798-802. doi: 10.1128/JCM.00125-13. Epub 2013 Apr 3.


Key diagnostic features of granulomatous interstitial nephritis due to Encephalitozoon cuniculi in a lung transplant recipient.

Levine DJ, Riley DJ, Jorgensen JH, McClain WD, Tio F, Visvesvara GS, Abboud-Werner SL.

Am J Surg Pathol. 2013 Mar;37(3):447-52. doi: 10.1097/PAS.0b013e31827e1968.


Detection systems for carbapenemase gene identification should include the SME serine carbapenemase.

Bush K, Pannell M, Lock JL, Queenan AM, Jorgensen JH, Lee RM, Lewis JS, Jarrett D.

Int J Antimicrob Agents. 2013 Jan;41(1):1-4. doi: 10.1016/j.ijantimicag.2012.08.008. Epub 2012 Dec 4.


Community-associated extended-spectrum β-lactamase-producing Escherichia coli infection in the United States.

Doi Y, Park YS, Rivera JI, Adams-Haduch JM, Hingwe A, Sordillo EM, Lewis JS 2nd, Howard WJ, Johnson LE, Polsky B, Jorgensen JH, Richter SS, Shutt KA, Paterson DL.

Clin Infect Dis. 2013 Mar;56(5):641-8. doi: 10.1093/cid/cis942. Epub 2012 Nov 13.


Putting the New CLSI Cephalosporin and Carbapenem Breakpoint Changes Into Practice in Clinical Microbiology Laboratories.

Jorgensen JH.

J Pediatric Infect Dis Soc. 2012 Jun;1(2):169-70. doi: 10.1093/jpids/pis047. No abstract available.


Convex optimization problem prototyping for image reconstruction in computed tomography with the Chambolle-Pock algorithm.

Sidky EY, Jørgensen JH, Pan X.

Phys Med Biol. 2012 May 21;57(10):3065-91. doi: 10.1088/0031-9155/57/10/3065. Epub 2012 Apr 27.


Molecular epidemiological analysis of Escherichia coli sequence type ST131 (O25:H4) and blaCTX-M-15 among extended-spectrum-β-lactamase-producing E. coli from the United States, 2000 to 2009.

Johnson JR, Urban C, Weissman SJ, Jorgensen JH, Lewis JS 2nd, Hansen G, Edelstein PH, Robicsek A, Cleary T, Adachi J, Paterson D, Quinn J, Hanson ND, Johnston BD, Clabots C, Kuskowski MA; AMERECUS Investigators.

Antimicrob Agents Chemother. 2012 May;56(5):2364-70. doi: 10.1128/AAC.05824-11. Epub 2012 Feb 21.


Clinical and microbiologic characteristics of cephalosporin-resistant Escherichia coli at three centers in the United States.

Park YS, Adams-Haduch JM, Shutt KA, Yarabinec DM 3rd, Johnson LE, Hingwe A, Lewis JS 2nd, Jorgensen JH, Doi Y.

Antimicrob Agents Chemother. 2012 Apr;56(4):1870-6. doi: 10.1128/AAC.05650-11. Epub 2012 Jan 30.


Streptococcus pneumoniae in biofilms are unable to cause invasive disease due to altered virulence determinant production.

Sanchez CJ, Kumar N, Lizcano A, Shivshankar P, Dunning Hotopp JC, Jorgensen JH, Tettelin H, Orihuela CJ.

PLoS One. 2011;6(12):e28738. doi: 10.1371/journal.pone.0028738. Epub 2011 Dec 8.


Detection of favorable oral cephalosporin-clavulanate interactions by in vitro disk approximation susceptibility testing of extended-spectrum-Beta-lactamase-producing members of the enterobacteriaceae.

Campbell JD, Lewis JS 2nd, McElmeel ML, Fulcher LC, Jorgensen JH.

J Clin Microbiol. 2012 Mar;50(3):1023-6. doi: 10.1128/JCM.06248-11. Epub 2011 Dec 14.


The outpatient institutional antibiogram does not accurately reflect the susceptibility of prepartum group B streptococcal isolates to erythromycin and clindamycin.

Gray KL, Fulcher LC, McElmeel ML, Xenakis EM, Jorgensen JH.

Diagn Microbiol Infect Dis. 2011 Dec;71(4):457-9. doi: 10.1016/j.diagmicrobio.2011.08.015. Epub 2011 Oct 5.


Dose of trimethoprim-sulfamethoxazole to treat skin and skin structure infections caused by methicillin-resistant Staphylococcus aureus.

Cadena J, Nair S, Henao-Martinez AF, Jorgensen JH, Patterson JE, Sreeramoju PV.

Antimicrob Agents Chemother. 2011 Dec;55(12):5430-2. doi: 10.1128/AAC.00706-11. Epub 2011 Sep 19.


Prevalence, severity, and treatment of community-acquired methicillin-resistant Staphylococcus aureus (CA-MRSA) skin and soft tissue infections in 10 medical clinics in Texas: a South Texas Ambulatory Research Network (STARNet) study.

Forcade NA, Parchman ML, Jorgensen JH, Du LC, Nyren NR, Treviño LB, Peña J, Mann MW, Muñoz A, Treviño SB, Mortensen EM, Wickes BL, Pollock BH, Frei CR.

J Am Board Fam Med. 2011 Sep-Oct;24(5):543-50. doi: 10.3122/jabfm.2011.05.110073.


Evaluation of disk approximation and single-well broth tests for detection of inducible clindamycin resistance in Streptococcus pneumoniae.

Jorgensen JH, McElmeel ML, Fulcher LC, McGee L, Glennen A.

J Clin Microbiol. 2011 Sep;49(9):3332-3. doi: 10.1128/JCM.00960-11. Epub 2011 Jul 20.


Collaborative evaluation of an erythromycin-clindamycin combination well for detection of inducible clindamycin resistance in beta-hemolytic streptococci by use of the CLSI broth microdilution method.

Jorgensen JH, McElmeel ML, Fulcher LC, McGee L, Richter SS, Heilmann KP, Ferraro MJ, Spargo J, Glennen A.

J Clin Microbiol. 2011 Aug;49(8):2884-6. doi: 10.1128/JCM.00912-11. Epub 2011 Jun 22.


Disseminated Burkholderia gladioli infection in a lung transplant recipient with underlying hypocomplementemic urticarial vasculitis.

Thompson GR 3rd, Wickes BL, Herrera ML, Haman TC, Lewis JS 2nd, Jorgensen JH.

Transpl Infect Dis. 2011 Dec;13(6):641-5. doi: 10.1111/j.1399-3062.2011.00638.x. Epub 2011 Apr 19.


Breakthrough bacteremia and septic shock due to Streptococcus anginosus resistant to daptomycin in a patient receiving daptomycin therapy.

Palacio F, Lewis JS 2nd, Sadkowski L, Echevarria K, Jorgensen JH.

Antimicrob Agents Chemother. 2011 Jul;55(7):3639-40. doi: 10.1128/AAC.00231-11. Epub 2011 Apr 18. No abstract available.


Antibiotic selection pressure and macrolide resistance in nasopharyngeal Streptococcus pneumoniae: a cluster-randomized clinical trial.

Skalet AH, Cevallos V, Ayele B, Gebre T, Zhou Z, Jorgensen JH, Zerihun M, Habte D, Assefa Y, Emerson PM, Gaynor BD, Porco TC, Lietman TM, Keenan JD.

PLoS Med. 2010 Dec 14;7(12):e1000377. doi: 10.1371/journal.pmed.1000377.


Detection of inducible clindamycin resistance in beta-hemolytic streptococci by using the CLSI broth microdilution test and erythromycin-clindamycin combinations.

Bowling JE, Owens AE, McElmeel ML, Fulcher LC, Herrera ML, Wickes BL, Jorgensen JH.

J Clin Microbiol. 2010 Jun;48(6):2275-7. doi: 10.1128/JCM.00663-10. Epub 2010 Apr 14.


Mechanisms of carbapenem resistance among a collection of Enterobacteriaceae clinical isolates in a Texas city.

Bennett JW, Mende K, Herrera ML, Yu X, Lewis JS 2nd, Wickes BL, Jorgensen JH, Murray CK.

Diagn Microbiol Infect Dis. 2010 Apr;66(4):445-8. doi: 10.1016/j.diagmicrobio.2009.11.013.


Stability of antibacterial self-assembled monolayers on hydroxyapatite.

Torres N, Oh S, Appleford M, Dean DD, Jorgensen JH, Ong JL, Agrawal CM, Mani G.

Acta Biomater. 2010 Aug;6(8):3242-55. doi: 10.1016/j.actbio.2010.02.032. Epub 2010 Feb 25.


Increased penicillin nonsusceptibility of nonvaccine-serotype invasive pneumococci other than serotypes 19A and 6A in post-7-valent conjugate vaccine era.

Gertz RE Jr, Li Z, Pimenta FC, Jackson D, Juni BA, Lynfield R, Jorgensen JH, Carvalho Mda G, Beall BW; Active Bacterial Core Surveillance Team.

J Infect Dis. 2010 Mar;201(5):770-5.


Detection of SHV-type extended-spectrum beta-lactamase in Enterobacter isolates.

Towne TG, Lewis JS 2nd, Herrera M, Wickes B, Jorgensen JH.

J Clin Microbiol. 2010 Jan;48(1):298-9. doi: 10.1128/JCM.01875-09. Epub 2009 Nov 18.


Detection of CTX-M-type extended-spectrum beta-lactamase (ESBLs) by testing with MicroScan overnight and ESBL confirmation panels.

Jorgensen JH, McElmeel ML, Fulcher LC, Zimmer BL.

J Clin Microbiol. 2010 Jan;48(1):120-3. doi: 10.1128/JCM.01507-09. Epub 2009 Nov 4.


Antimicrobial susceptibility testing: a review of general principles and contemporary practices.

Jorgensen JH, Ferraro MJ.

Clin Infect Dis. 2009 Dec 1;49(11):1749-55. doi: 10.1086/647952. Review.


Presence and molecular epidemiology of virulence factors in methicillin-resistant Staphylococcus aureus strains colonizing and infecting soldiers.

Ellis MW, Griffith ME, Jorgensen JH, Hospenthal DR, Mende K, Patterson JE.

J Clin Microbiol. 2009 Apr;47(4):940-5. doi: 10.1128/JCM.02352-08. Epub 2009 Feb 11.


Effect of pneumococcal conjugate vaccine on pneumococcal meningitis.

Hsu HE, Shutt KA, Moore MR, Beall BW, Bennett NM, Craig AS, Farley MM, Jorgensen JH, Lexau CA, Petit S, Reingold A, Schaffner W, Thomas A, Whitney CG, Harrison LH.

N Engl J Med. 2009 Jan 15;360(3):244-56. doi: 10.1056/NEJMoa0800836.


Oral and parenteral therapeutic options for outpatient urinary infections caused by enterobacteriaceae producing CTX-M extended-spectrum beta-lactamases.

Prakash V, Lewis JS 2nd, Herrera ML, Wickes BL, Jorgensen JH.

Antimicrob Agents Chemother. 2009 Mar;53(3):1278-80. doi: 10.1128/AAC.01519-08. Epub 2009 Jan 5.


KPC-2-producing Enterobacter cloacae and pseudomonas putida coinfection in a liver transplant recipient.

Bennett JW, Herrera ML, Lewis JS 2nd, Wickes BW, Jorgensen JH.

Antimicrob Agents Chemother. 2009 Jan;53(1):292-4. doi: 10.1128/AAC.00931-08. Epub 2008 Oct 13.


Vancomycin MICs for methicillin-resistant Staphylococcus aureus isolates differ based upon the susceptibility test method used.

Prakash V, Lewis JS 2nd, Jorgensen JH.

Antimicrob Agents Chemother. 2008 Dec;52(12):4528. doi: 10.1128/AAC.00904-08. Epub 2008 Oct 6. No abstract available.


Population snapshot of emergent Streptococcus pneumoniae serotype 19A in the United States, 2005.

Moore MR, Gertz RE Jr, Woodbury RL, Barkocy-Gallagher GA, Schaffner W, Lexau C, Gershman K, Reingold A, Farley M, Harrison LH, Hadler JL, Bennett NM, Thomas AR, McGee L, Pilishvili T, Brueggemann AB, Whitney CG, Jorgensen JH, Beall B.

J Infect Dis. 2008 Apr 1;197(7):1016-27. doi: 10.1086/528996.


Activity of the Diaminopyrimidine AR-709 against recently collected multidrug-resistant isolates of invasive Streptococcus pneumoniae from North America.

Ressner RA, Moore MR, Jorgensen JH.

Antimicrob Agents Chemother. 2008 Mar;52(3):1147-9. doi: 10.1128/AAC.01387-07. Epub 2008 Jan 7.


Diminished vancomycin and daptomycin susceptibility during prolonged bacteremia with methicillin-resistant Staphylococcus aureus.

Bennett JW, Murray CK, Holmes RL, Patterson JE, Jorgensen JH.

Diagn Microbiol Infect Dis. 2008 Apr;60(4):437-40. Epub 2007 Dec 21.


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