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Items: 33

1.

Effects of microcompartmentation on flux distribution and metabolic pools in Chlamydomonas reinhardtii chloroplasts.

Küken A, Sommer F, Yaneva-Roder L, Mackinder LC, Höhne M, Geimer S, Jonikas MC, Schroda M, Stitt M, Nikoloski Z, Mettler-Altmann T.

Elife. 2018 Oct 11;7. pii: e37960. doi: 10.7554/eLife.37960.

2.

The ER membrane protein complex interacts cotranslationally to enable biogenesis of multipass membrane proteins.

Shurtleff MJ, Itzhak DN, Hussmann JA, Schirle Oakdale NT, Costa EA, Jonikas M, Weibezahn J, Popova KD, Jan CH, Sinitcyn P, Vembar SS, Hernandez H, Cox J, Burlingame AL, Brodsky JL, Frost A, Borner GH, Weissman JS.

Elife. 2018 May 29;7. pii: e37018. doi: 10.7554/eLife.37018.

3.

Stem cell modeling of mitochondrial parkinsonism reveals key functions of OPA1.

Jonikas M, Madill M, Mathy A, Zekoll T, Zois CE, Wigfield S, Kurzawa-Akanbi M, Browne C, Sims D, Chinnery PF, Cowley SA, Tofaris GK.

Ann Neurol. 2018 May;83(5):915-925. doi: 10.1002/ana.25221. Epub 2018 Apr 25.

4.

The Eukaryotic CO2-Concentrating Organelle Is Liquid-like and Exhibits Dynamic Reorganization.

Freeman Rosenzweig ES, Xu B, Kuhn Cuellar L, Martinez-Sanchez A, Schaffer M, Strauss M, Cartwright HN, Ronceray P, Plitzko JM, Förster F, Wingreen NS, Engel BD, Mackinder LCM, Jonikas MC.

Cell. 2017 Sep 21;171(1):148-162.e19. doi: 10.1016/j.cell.2017.08.008.

5.

A Spatial Interactome Reveals the Protein Organization of the Algal CO2-Concentrating Mechanism.

Mackinder LCM, Chen C, Leib RD, Patena W, Blum SR, Rodman M, Ramundo S, Adams CM, Jonikas MC.

Cell. 2017 Sep 21;171(1):133-147.e14. doi: 10.1016/j.cell.2017.08.044.

6.

Differentiation and Transplantation of Embryonic Stem Cell-Derived Cone Photoreceptors into a Mouse Model of End-Stage Retinal Degeneration.

Kruczek K, Gonzalez-Cordero A, Goh D, Naeem A, Jonikas M, Blackford SJI, Kloc M, Duran Y, Georgiadis A, Sampson RD, Maswood RN, Smith AJ, Decembrini S, Arsenijevic Y, Sowden JC, Pearson RA, West EL, Ali RR.

Stem Cell Reports. 2017 Jun 6;8(6):1659-1674. doi: 10.1016/j.stemcr.2017.04.030. Epub 2017 May 25.

7.

An atlas of human kinase regulation.

Ochoa D, Jonikas M, Lawrence RT, El Debs B, Selkrig J, Typas A, Villén J, Santos SD, Beltrao P.

Mol Syst Biol. 2016 Dec 1;12(12):888. doi: 10.15252/msb.20167295.

8.

Regulation and Levels of the Thylakoid K+/H+ Antiporter KEA3 Shape the Dynamic Response of Photosynthesis in Fluctuating Light.

Armbruster U, Leonelli L, Correa Galvis V, Strand D, Quinn EH, Jonikas MC, Niyogi KK.

Plant Cell Physiol. 2016 Jul;57(7):1557-1567. Epub 2016 May 6.

9.

A repeat protein links Rubisco to form the eukaryotic carbon-concentrating organelle.

Mackinder LC, Meyer MT, Mettler-Altmann T, Chen VK, Mitchell MC, Caspari O, Freeman Rosenzweig ES, Pallesen L, Reeves G, Itakura A, Roth R, Sommer F, Geimer S, Mühlhaus T, Schroda M, Goodenough U, Stitt M, Griffiths H, Jonikas MC.

Proc Natl Acad Sci U S A. 2016 May 24;113(21):5958-63. doi: 10.1073/pnas.1522866113. Epub 2016 May 10.

10.

High-Throughput Genetics Strategies for Identifying New Components of Lipid Metabolism in the Green Alga Chlamydomonas reinhardtii.

Li X, Jonikas MC.

Subcell Biochem. 2016;86:223-47. doi: 10.1007/978-3-319-25979-6_10.

PMID:
27023238
11.

An Indexed, Mapped Mutant Library Enables Reverse Genetics Studies of Biological Processes in Chlamydomonas reinhardtii.

Li X, Zhang R, Patena W, Gang SS, Blum SR, Ivanova N, Yue R, Robertson JM, Lefebvre PA, Fitz-Gibbon ST, Grossman AR, Jonikas MC.

Plant Cell. 2016 Feb;28(2):367-87. doi: 10.1105/tpc.15.00465. Epub 2016 Jan 13.

12.

Critical role of Chlamydomonas reinhardtii ferredoxin-5 in maintaining membrane structure and dark metabolism.

Yang W, Wittkopp TM, Li X, Warakanont J, Dubini A, Catalanotti C, Kim RG, Nowack EC, Mackinder LC, Aksoy M, Page MD, D'Adamo S, Saroussi S, Heinnickel M, Johnson X, Richaud P, Alric J, Boehm M, Jonikas MC, Benning C, Merchant SS, Posewitz MC, Grossman AR.

Proc Natl Acad Sci U S A. 2015 Dec 1;112(48):14978-83. doi: 10.1073/pnas.1515240112. Epub 2015 Nov 16.

13.

Introducing an algal carbon-concentrating mechanism into higher plants: location and incorporation of key components.

Atkinson N, Feike D, Mackinder LC, Meyer MT, Griffiths H, Jonikas MC, Smith AM, McCormick AJ.

Plant Biotechnol J. 2016 May;14(5):1302-15. doi: 10.1111/pbi.12497. Epub 2015 Nov 5.

14.

Molecular techniques to interrogate and edit the Chlamydomonas nuclear genome.

Jinkerson RE, Jonikas MC.

Plant J. 2015 May;82(3):393-412. doi: 10.1111/tpj.12801. Epub 2015 Mar 16. Review.

15.

Ion antiport accelerates photosynthetic acclimation in fluctuating light environments.

Armbruster U, Carrillo LR, Venema K, Pavlovic L, Schmidtmann E, Kornfeld A, Jahns P, Berry JA, Kramer DM, Jonikas MC.

Nat Commun. 2014 Nov 13;5:5439. doi: 10.1038/ncomms6439.

16.

Alternative acetate production pathways in Chlamydomonas reinhardtii during dark anoxia and the dominant role of chloroplasts in fermentative acetate production.

Yang W, Catalanotti C, D'Adamo S, Wittkopp TM, Ingram-Smith CJ, Mackinder L, Miller TE, Heuberger AL, Peers G, Smith KS, Jonikas MC, Grossman AR, Posewitz MC.

Plant Cell. 2014 Nov;26(11):4499-518. doi: 10.1105/tpc.114.129965. Epub 2014 Nov 7.

17.

Waking sleeping algal cells.

Li X, Umen JG, Jonikas MC.

Proc Natl Acad Sci U S A. 2014 Nov 4;111(44):15610-1. doi: 10.1073/pnas.1418295111. Epub 2014 Oct 23. No abstract available. Erratum in: Proc Natl Acad Sci U S A. 2015 Feb 10;112(6):E596.

18.

A fluorescence-activated cell sorting-based strategy for rapid isolation of high-lipid Chlamydomonas mutants.

Terashima M, Freeman ES, Jinkerson RE, Jonikas MC.

Plant J. 2015 Jan;81(1):147-59. doi: 10.1111/tpj.12682. Epub 2014 Oct 25.

19.

Actin is required for IFT regulation in Chlamydomonas reinhardtii.

Avasthi P, Onishi M, Karpiak J, Yamamoto R, Mackinder L, Jonikas MC, Sale WS, Shoichet B, Pringle JR, Marshall WF.

Curr Biol. 2014 Sep 8;24(17):2025-32. doi: 10.1016/j.cub.2014.07.038. Epub 2014 Aug 21.

20.

High-Throughput Genotyping of Green Algal Mutants Reveals Random Distribution of Mutagenic Insertion Sites and Endonucleolytic Cleavage of Transforming DNA.

Zhang R, Patena W, Armbruster U, Gang SS, Blum SR, Jonikas MC.

Plant Cell. 2014 Apr;26(4):1398-1409. Epub 2014 Apr 4.

21.

Early detection of poor adherers to statins: applying individualized surveillance to pay for performance.

Zimolzak AJ, Spettell CM, Fernandes J, Fusaro VA, Palmer NP, Saria S, Kohane IS, Jonikas MA, Mandl KD.

PLoS One. 2013 Nov 4;8(11):e79611. doi: 10.1371/journal.pone.0079611. eCollection 2013.

22.

Scalable decision support at the point of care: a substitutable electronic health record app for monitoring medication adherence.

Bosl W, Mandel J, Jonikas M, Ramoni RB, Kohane IS, Mandl KD.

Interact J Med Res. 2013 Jul 22;2(2):e13. doi: 10.2196/ijmr.2480.

23.

Understanding the role of three-dimensional topology in determining the folding intermediates of group I introns.

Chen C, Mitra S, Jonikas M, Martin J, Brenowitz M, Laederach A.

Biophys J. 2013 Mar 19;104(6):1326-37. doi: 10.1016/j.bpj.2013.02.007. Epub 2013 Mar 19.

24.

Surveillance of medication use: early identification of poor adherence.

Jonikas MA, Mandl KD.

J Am Med Inform Assoc. 2012 Jul-Aug;19(4):649-54. doi: 10.1136/amiajnl-2011-000416. Epub 2011 Nov 19.

25.

Automated identification of pathways from quantitative genetic interaction data.

Battle A, Jonikas MC, Walter P, Weissman JS, Koller D.

Mol Syst Biol. 2010 Jun 8;6:379. doi: 10.1038/msb.2010.27.

26.

J domain co-chaperone specificity defines the role of BiP during protein translocation.

Vembar SS, Jonikas MC, Hendershot LM, Weissman JS, Brodsky JL.

J Biol Chem. 2010 Jul 16;285(29):22484-94. doi: 10.1074/jbc.M110.102186. Epub 2010 Apr 29.

27.

Knowledge-based instantiation of full atomic detail into coarse-grain RNA 3D structural models.

Jonikas MA, Radmer RJ, Altman RB.

Bioinformatics. 2009 Dec 15;25(24):3259-66. doi: 10.1093/bioinformatics/btp576. Epub 2009 Oct 7.

28.

Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum.

Jonikas MC, Collins SR, Denic V, Oh E, Quan EM, Schmid V, Weibezahn J, Schwappach B, Walter P, Weissman JS, Schuldiner M.

Science. 2009 Mar 27;323(5922):1693-7. doi: 10.1126/science.1167983.

29.

Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters.

Jonikas MA, Radmer RJ, Laederach A, Das R, Pearlman S, Herschlag D, Altman RB.

RNA. 2009 Feb;15(2):189-99. doi: 10.1261/rna.1270809.

30.

Structural inference of native and partially folded RNA by high-throughput contact mapping.

Das R, Kudaravalli M, Jonikas M, Laederach A, Fong R, Schwans JP, Baker D, Piccirilli JA, Altman RB, Herschlag D.

Proc Natl Acad Sci U S A. 2008 Mar 18;105(11):4144-9. doi: 10.1073/pnas.0709032105. Epub 2008 Mar 5.

31.

Identification of yeast proteins necessary for cell-surface function of a potassium channel.

Haass FA, Jonikas M, Walter P, Weissman JS, Jan YN, Jan LY, Schuldiner M.

Proc Natl Acad Sci U S A. 2007 Nov 13;104(46):18079-84. Epub 2007 Nov 7.

32.

Distinct contribution of electrostatics, initial conformational ensemble, and macromolecular stability in RNA folding.

Laederach A, Shcherbakova I, Jonikas MA, Altman RB, Brenowitz M.

Proc Natl Acad Sci U S A. 2007 Apr 24;104(17):7045-50. Epub 2007 Apr 16.

33.

Influence of three-dimensional scaffold on the expression of osteogenic differentiation markers by human dermal fibroblasts.

Hee CK, Jonikas MA, Nicoll SB.

Biomaterials. 2006 Feb;27(6):875-84. Epub 2005 Aug 15.

PMID:
16102817

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