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EGFR Signaling Stimulates Autophagy to Regulate Stem Cell Maintenance and Lipid Homeostasis in the Drosophila Testis.

Sênos Demarco R, Uyemura BS, Jones DL.

Cell Rep. 2020 Jan 28;30(4):1101-1116.e5. doi: 10.1016/j.celrep.2019.12.086.


Multiple Lines of Evidence Identify U(V) as a Key Intermediate during U(VI) Reduction by Shewanella oneidensis MR1.

Vettese GF, Morris K, Natrajan LS, Shaw S, Vitova T, Galanzew J, Jones DL, Lloyd JR.

Environ Sci Technol. 2020 Feb 18;54(4):2268-2276. doi: 10.1021/acs.est.9b05285. Epub 2020 Jan 28.


Microbial diversity dynamics during the self-acidification of dairy slurry.

Bastami MS, Jones DL, Chadwick DR.

Environ Technol. 2020 Jan 7:1-11. doi: 10.1080/09593330.2019.1706644. [Epub ahead of print]


Impact of water table levels and winter cover crops on greenhouse gas emissions from cultivated peat soils.

Wen Y, Zang H, Ma Q, Freeman B, Chadwick DR, Evans CD, Jones DL.

Sci Total Environ. 2019 Nov 20:135130. doi: 10.1016/j.scitotenv.2019.135130. [Epub ahead of print]


Advancing the understanding of research during medical education through collaborative learning: the Collaboration of Practitioners and Researchers Seminar Series.

Yin C, Moszcyznski AJ, Blom JN, Johnson TPE, Jones DL.

BMC Med Educ. 2019 Dec 10;19(1):457. doi: 10.1186/s12909-019-1890-6.


Development, implementation and dissemination: Couples and Parent-Child Communication Workshops in Zambia.

Butts SA, Langlie J, Rodriguez VJ, Weiss SM, Menon A, Hapunda G, Jere-Folotiya J, Mwaba S, Jones DL.

AIDS Care. 2019 Nov 27:1-4. doi: 10.1080/09540121.2019.1695730. [Epub ahead of print]


Behavior of microplastics and plastic film residues in the soil environment: A critical review.

Qi R, Jones DL, Li Z, Liu Q, Yan C.

Sci Total Environ. 2020 Feb 10;703:134722. doi: 10.1016/j.scitotenv.2019.134722. Epub 2019 Oct 17. Review.


A multi-chamber tissue culture device for load-dependent parallel evaluation of tendon explants.

Soreide E, Denbeigh JM, Lewallen EA, Thaler R, Samsonraj RM, Jones DL, Xu W, Larson D, Nordsletten L, Kakar S, van Wijnen AJ.

BMC Musculoskelet Disord. 2019 Nov 18;20(1):549. doi: 10.1186/s12891-019-2896-2.


Differential Item Functioning by HIV Status and Sexual Orientation of the Center for Epidemiological Studies-Depression Scale: An Item Response Theory Analysis.

Radusky PD, Rodriguez VJ, Kumar M, Jones DL.

Assessment. 2019 Nov 13:1073191119887445. doi: 10.1177/1073191119887445. [Epub ahead of print]


Selective YAP/TAZ inhibition in fibroblasts via dopamine receptor D1 agonism reverses fibrosis.

Haak AJ, Kostallari E, Sicard D, Ligresti G, Choi KM, Caporarello N, Jones DL, Tan Q, Meridew J, Diaz Espinosa AM, Aravamudhan A, Maiers JL, Britt RD Jr, Roden AC, Pabelick CM, Prakash YS, Nouraie SM, Li X, Zhang Y, Kass DJ, Lagares D, Tager AM, Varelas X, Shah VH, Tschumperlin DJ.

Sci Transl Med. 2019 Oct 30;11(516). pii: eaau6296. doi: 10.1126/scitranslmed.aau6296.


Maternal Factors Associated With Infant Neurodevelopment in HIV-Exposed Uninfected Infants.

Alcaide ML, Rodriguez VJ, Abbamonte JM, Ramlagan S, Sifunda S, Weiss SM, Peltzer K, Jones DL.

Open Forum Infect Dis. 2019 Oct 9;6(10):ofz351. doi: 10.1093/ofid/ofz351. eCollection 2019 Oct.


Underdosing of Prophylactic Enoxaparin Is Common in Orthopaedic Trauma and Predicts 90-Day Venous Thromboembolism.

Jones DL, Jones WA, Fleming KI, Higgins TF, Rothberg DL, Zhang Y, Pannucci CJ.

J Orthop Trauma. 2019 Nov;33(11):570-576. doi: 10.1097/BOT.0000000000001563.


Women of Reproductive Age Living with HIV in Argentina: Unique Challenges for Reengagement in Care.

Cecchini D, Alcaide ML, Rodriguez VJ, Mandell LN, Abbamonte JM, Cassetti I, Cahn P, Sued O, Weiss SM, Jones DL.

J Int Assoc Provid AIDS Care. 2019 Jan-Dec;18:2325958219883250. doi: 10.1177/2325958219883250.


Angiosperm symbioses with non-mycorrhizal fungal partners enhance N acquisition from ancient organic matter in a warming maritime Antarctic.

Hill PW, Broughton R, Bougoure J, Havelange W, Newsham KK, Grant H, Murphy DV, Clode P, Ramayah S, Marsden KA, Quilliam RS, Roberts P, Brown C, Read DJ, Deluca TH, Bardgett RD, Hopkins DW, Jones DL.

Ecol Lett. 2019 Dec;22(12):2111-2119. doi: 10.1111/ele.13399. Epub 2019 Oct 17.


HIV and carotid atherosclerosis: a mediational model.

Alcaide ML, Rodriguez VJ, Abbamonte JM, Pallikuth S, Langlie J, Soni M, Weiss SM, Hurwitz BE, Pahwa S, Jones DL, Kumar M.

AIDS Care. 2019 Sep 23:1-5. doi: 10.1080/09540121.2019.1668527. [Epub ahead of print]


TGFβ-induced fibroblast activation requires persistent and targeted HDAC-mediated gene repression.

Jones DL, Haak AJ, Caporarello N, Choi KM, Ye Z, Yan H, Varelas X, Ordog T, Ligresti G, Tschumperlin DJ.

J Cell Sci. 2019 Oct 18;132(20). pii: jcs233486. doi: 10.1242/jcs.233486.


Nutrient enrichment induces a shift in dissolved organic carbon (DOC) metabolism in oligotrophic freshwater sediments.

Brailsford FL, Glanville HC, Golyshin PN, Marshall MR, Lloyd CE, Johnes PJ, Jones DL.

Sci Total Environ. 2019 Nov 10;690:1131-1139. doi: 10.1016/j.scitotenv.2019.07.054. Epub 2019 Jul 4.


Epidemiology and etiology of infantile developmental and epileptic encephalopathies in Tasmania.

Ware TL, Huskins SR, Grinton BE, Liu YC, Bennett MF, Harvey M, McMahon J, Andreopoulos-Malikotsinas D, Bahlo M, Howell KB, Hildebrand MS, Damiano JA, Rosenfeld A, Mackay MT, Mandelstam S, Leventer RJ, Harvey AS, Freeman JL, Scheffer IE, Jones DL, Berkovic SF.

Epilepsia Open. 2019 Jul 22;4(3):504-510. doi: 10.1002/epi4.12350. eCollection 2019 Sep.


Nitrification represents the bottle-neck of sheep urine patch N2O emissions from extensively grazed organic soils.

Marsden KA, Holmberg JA, Jones DL, Charteris AF, Cárdenas LM, Chadwick DR.

Sci Total Environ. 2019 Dec 10;695:133786. doi: 10.1016/j.scitotenv.2019.133786. Epub 2019 Aug 6.


Plant and soil communities are associated with the response of soil water repellency to environmental stress.

Seaton FM, Jones DL, Creer S, George PBL, Smart SM, Lebron I, Barrett G, Emmett BA, Robinson DA.

Sci Total Environ. 2019 Oct 15;687:929-938. doi: 10.1016/j.scitotenv.2019.06.052. Epub 2019 Jun 5.


High Levels of Syndemics and Their Association with Adherence, Viral Non-suppression, and Biobehavioral Transmission Risk in Miami, a U.S. City with an HIV/AIDS Epidemic.

Glynn TR, Safren SA, Carrico AW, Mendez NA, Duthely LM, Dale SK, Jones DL, Feaster DJ, Rodriguez AE.

AIDS Behav. 2019 Nov;23(11):2956-2965. doi: 10.1007/s10461-019-02619-0.


Microbial uptake kinetics of dissolved organic carbon (DOC) compound groups from river water and sediments.

Brailsford FL, Glanville HC, Golyshin PN, Johnes PJ, Yates CA, Jones DL.

Sci Rep. 2019 Aug 2;9(1):11229. doi: 10.1038/s41598-019-47749-6.


Negative influence of biofilm on CoCrMo corrosion.

Chuang PJ, Swaminathan V, Pavlovsky L, Marquez-Catral L, Jones DL, Song L.

J Biomed Mater Res A. 2019 Nov;107(11):2556-2566. doi: 10.1002/jbm.a.36761. Epub 2019 Aug 8.


Eliminating the effects of motion during radiofrequency lesion delivery using a novel contact-force controller.

Gelman D, Skanes AC, Jones DL, Timofeyev M, Bar-On T, Drangova M.

J Cardiovasc Electrophysiol. 2019 Sep;30(9):1652-1662. doi: 10.1111/jce.14093. Epub 2019 Aug 7.


Correction to: Long-Term Recovery of Microbial Communities in the Boreal Bryosphere Following Fire Disturbance.

Cutler NA, Arróniz-Crespo M, Street LE, Jones DL, Chaput DL, DeLuca TH.

Microb Ecol. 2020 Feb;79(2):516. doi: 10.1007/s00248-019-01408-5.


Self-Reported Long-Term Antiretroviral Adherence: A Longitudinal Study Among HIV Infected Pregnant Women in Mpumalanga, South Africa.

Ramlagan S, Rodriguez VJ, Peltzer K, Ruiter RAC, Jones DL, Sifunda S.

AIDS Behav. 2019 Sep;23(9):2576-2587. doi: 10.1007/s10461-019-02563-z.


Opinions of Speech-Language Pathologists Regarding Speech Management for Children With Cleft Lip and Palate.

Hardin-Jones M, Jones DL, Dolezal RC.

Cleft Palate Craniofac J. 2020 Jan;57(1):55-64. doi: 10.1177/1055665619857000. Epub 2019 Jun 20.


Maternal voluntary exercise mitigates oxidative stress and incidence of congenital heart defects in pre-gestational diabetes.

Saiyin T, Engineer A, Greco ER, Kim MY, Lu X, Jones DL, Feng Q.

J Cell Mol Med. 2019 Aug;23(8):5553-5565. doi: 10.1111/jcmm.14439. Epub 2019 Jun 18.


PGC1α repression in IPF fibroblasts drives a pathologic metabolic, secretory and fibrogenic state.

Caporarello N, Meridew JA, Jones DL, Tan Q, Haak AJ, Choi KM, Manlove LJ, Prakash YS, Tschumperlin DJ, Ligresti G.

Thorax. 2019 Aug;74(8):749-760. doi: 10.1136/thoraxjnl-2019-213064. Epub 2019 Jun 10.


Identification of differential item functioning by race and ethnicity in the Childhood Trauma Questionnaire.

Rodriguez VJ, Shaffer A, Are F, Madden A, Jones DL, Kumar M.

Child Abuse Negl. 2019 Aug;94:104030. doi: 10.1016/j.chiabu.2019.104030. Epub 2019 Jun 7.


Impact of male partner involvement on mother-to-child transmission of HIV and HIV-free survival among HIV-exposed infants in rural South Africa: Results from a two phase randomised controlled trial.

Sifunda S, Peltzer K, Rodriguez VJ, Mandell LN, Lee TK, Ramlagan S, Alcaide ML, Weiss SM, Jones DL.

PLoS One. 2019 Jun 5;14(6):e0217467. doi: 10.1371/journal.pone.0217467. eCollection 2019.


Two-Step Concentration of Complex Water Samples for the Detection of Viruses.

Farkas K, McDonald JE, Malham SK, Jones DL.

Methods Protoc. 2018 Sep 10;1(3). pii: E35. doi: 10.3390/mps1030035.


Mitochondrial fusion regulates lipid homeostasis and stem cell maintenance in the Drosophila testis.

Sênos Demarco R, Uyemura BS, D'Alterio C, Jones DL.

Nat Cell Biol. 2019 Jun;21(6):710-720. doi: 10.1038/s41556-019-0332-3. Epub 2019 Jun 3.


Sexual risk behavior among HIV-infected women in South Africa at 12-months postpartum.

Jones DL, Rodriguez VJ, Mandell LN, Lee TK, Weiss SM, Peltzer K.

AIDS Care. 2019 Sep;31(9):1114-1123. doi: 10.1080/09540121.2019.1620168. Epub 2019 May 23.


CBX5/G9a/H3K9me-mediated gene repression is essential to fibroblast activation during lung fibrosis.

Ligresti G, Caporarello N, Meridew JA, Jones DL, Tan Q, Choi KM, Haak AJ, Aravamudhan A, Roden AC, Prakash YS, Lomberk G, Urrutia RA, Tschumperlin DJ.

JCI Insight. 2019 May 16;5. pii: 127111. doi: 10.1172/jci.insight.127111.


Identifying factors associated with successful implementation and uptake of an evidence-based voluntary medical male circumcision program in Zambia: the Spear and Shield 2 Program.

Rodriguez VJ, Chahine A, de la Rosa A, Lee TK, Cristofari NV, Jones DL, Zulu R, Chitalu N, Weiss SM.

Transl Behav Med. 2019 May 16. pii: ibz048. doi: 10.1093/tbm/ibz048. [Epub ahead of print]


Application of Bayesian statistics to estimate nitrous oxide emission factors of three nitrogen fertilisers on UK grasslands.

Cowan N, Levy P, Drewer J, Carswell A, Shaw R, Simmons I, Bache C, Marinheiro J, Brichet J, Sanchez-Rodriguez AR, Cotton J, Hill PW, Chadwick DR, Jones DL, Misselbrook TH, Skiba U.

Environ Int. 2019 Jul;128:362-370. doi: 10.1016/j.envint.2019.04.054. Epub 2019 May 8.


Nascent Lung Organoids Reveal Epithelium- and Bone Morphogenetic Protein-mediated Suppression of Fibroblast Activation.

Tan Q, Ma XY, Liu W, Meridew JA, Jones DL, Haak AJ, Sicard D, Ligresti G, Tschumperlin DJ.

Am J Respir Cell Mol Biol. 2019 Nov;61(5):607-619. doi: 10.1165/rcmb.2018-0390OC.


Suicidal Ideation Among Adults Re-engaging in HIV Care in Argentina.

Mandell LN, Rodriguez VJ, De La Rosa A, Abbamonte JM, Sued O, Cecchini D, Cassetti I, Cahn P, Weiss SM, Jones DL; COPA Study Group.

AIDS Behav. 2019 Dec;23(12):3427-3434. doi: 10.1007/s10461-019-02526-4.


Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems.

George PBL, Lallias D, Creer S, Seaton FM, Kenny JG, Eccles RM, Griffiths RI, Lebron I, Emmett BA, Robinson DA, Jones DL.

Nat Commun. 2019 Mar 7;10(1):1107. doi: 10.1038/s41467-019-09031-1.


Viral dispersal in the coastal zone: A method to quantify water quality risk.

Robins PE, Farkas K, Cooper D, Malham SK, Jones DL.

Environ Int. 2019 May;126:430-442. doi: 10.1016/j.envint.2019.02.042. Epub 2019 Mar 2.


HIV Prevention among Zambian Itinerant Workers: Challenges and Solutions.

Kayukwa A, Butts SA, Barylski NA, Alcaide ML, Rodriguez VJ, Chitalu N, Zulu R, Weiss SM, Jones DL.

J Health Care Poor Underserved. 2019;30(1):358-377. doi: 10.1353/hpu.2019.0026.


Heterochromatin Protein 1 (HP1) inhibits stem cell proliferation induced by ectopic activation of the Jak/STAT pathway in the Drosophila testis.

Loza-Coll MA, Petrossian CC, Boyle ML, Jones DL.

Exp Cell Res. 2019 Apr 15;377(1-2):1-9. doi: 10.1016/j.yexcr.2019.02.024. Epub 2019 Feb 25.


The effect of male involvement and a prevention of mother-to-child transmission (PMTCT) intervention on depressive symptoms in perinatal HIV-infected rural South African women.

Peltzer K, Abbamonte JM, Mandell LN, Rodriguez VJ, Lee TK, Weiss SM, Jones DL.

Arch Womens Ment Health. 2020 Feb;23(1):101-111. doi: 10.1007/s00737-019-00955-7. Epub 2019 Feb 23.


Critical Evaluation of CrAssphage as a Molecular Marker for Human-Derived Wastewater Contamination in the Aquatic Environment.

Farkas K, Adriaenssens EM, Walker DI, McDonald JE, Malham SK, Jones DL.

Food Environ Virol. 2019 Jun;11(2):113-119. doi: 10.1007/s12560-019-09369-1. Epub 2019 Feb 13.


Development of Alditol Acetate Derivatives for the Determination of 15N-Enriched Amino Sugars by Gas Chromatography-Combustion-Isotope Ratio Mass Spectrometry.

Reay MK, Knowles TDJ, Jones DL, Evershed RP.

Anal Chem. 2019 Mar 5;91(5):3397-3404. doi: 10.1021/acs.analchem.8b04838. Epub 2019 Feb 22.


Adolescent and young adult couples' views of intravaginal practices: a qualitative analysis of a pilot study.

Moise IK, de Joya E, Caplan B, Rodriguez VJ, Butts S, Chisembele M, Weiss SM, Jones DL, Alcaide ML.

Int J Womens Health. 2019 Jan 18;11:49-56. doi: 10.2147/IJWH.S180233. eCollection 2019.


Archaea dominate the microbial community in an ecosystem with low-to-moderate temperature and extreme acidity.

Korzhenkov AA, Toshchakov SV, Bargiela R, Gibbard H, Ferrer M, Teplyuk AV, Jones DL, Kublanov IV, Golyshin PN, Golyshina OV.

Microbiome. 2019 Jan 28;7(1):11. doi: 10.1186/s40168-019-0623-8.


The role of sleep dysfunction in the relationship between trauma, neglect and depression in methamphetamine using men.

Jones DL, Rodriguez VJ, De La Rosa A, Dietch J, Kumar M.

Neurol Psychiatry Brain Res. 2018 Dec;30:30-34. doi: 10.1016/j.npbr.2018.05.002. Epub 2018 May 25.

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