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Empirical Anti-MRSA vs Standard Antibiotic Therapy and Risk of 30-Day Mortality in Patients Hospitalized for Pneumonia.

Jones BE, Ying J, Stevens V, Haroldsen C, He T, Nevers M, Christensen MA, Nelson RE, Stoddard GJ, Sauer BC, Yarbrough PM, Jones MM, Goetz MB, Greene T, Samore MH.

JAMA Intern Med. 2020 Feb 17. doi: 10.1001/jamainternmed.2019.7495. [Epub ahead of print]


Validation of the SHEA/IDSA severity criteria to predict poor outcomes among inpatients and outpatients with Clostridioides difficile infection.

Stevens VW, Shoemaker HE, Jones MM, Jones BE, Nelson RE, Khader K, Samore MH, Rubin MA.

Infect Control Hosp Epidemiol. 2020 Jan 30:1-7. doi: 10.1017/ice.2020.8. [Epub ahead of print]


Summary for Clinicians: Clinical Practice Guideline for the Diagnosis and Treatment of Community-acquired Pneumonia.

Jones BE, Herman DD, Dela Cruz CS, Waterer GW, Metlay JP, Ruminjo JK, Thomson CC.

Ann Am Thorac Soc. 2020 Feb;17(2):133-138. doi: 10.1513/AnnalsATS.201909-704CME. No abstract available.


Pneumonia and Electronic Health Records-a window into disease, a mirror of our behavior, or just another streetlight?

Jones BE, Jones MM.

Clin Infect Dis. 2019 Oct 29. pii: ciz1053. doi: 10.1093/cid/ciz1053. [Epub ahead of print] No abstract available.


Potential Impact of Hospital-acquired Pneumonia Guidelines on Empiric Antibiotics. An Evaluation of 113 Veterans Affairs Medical Centers.

Bostwick AD, Jones BE, Paine R, Goetz MB, Samore M, Jones M.

Ann Am Thorac Soc. 2019 Nov;16(11):1392-1398. doi: 10.1513/AnnalsATS.201902-162OC.


Microbiomics of Namib Desert habitats.

Cowan DA, Hopkins DW, Jones BE, Maggs-Kölling G, Majewska R, Ramond JB.

Extremophiles. 2020 Jan;24(1):17-29. doi: 10.1007/s00792-019-01122-7. Epub 2019 Aug 2. Review.


Autoimmune receptor encephalitis in mice induced by active immunization with conformationally stabilized holoreceptors.

Jones BE, Tovar KR, Goehring A, Jalali-Yazdi F, Okada NJ, Gouaux E, Westbrook GL.

Sci Transl Med. 2019 Jul 10;11(500). pii: eaaw0044. doi: 10.1126/scitranslmed.aaw0044.


Arousal and sleep circuits.

Jones BE.

Neuropsychopharmacology. 2020 Jan;45(1):6-20. doi: 10.1038/s41386-019-0444-2. Epub 2019 Jun 19. Review.


Development of a high-throughput solubility screening assay for use in antibody discovery.

Chai Q, Shih J, Weldon C, Phan S, Jones BE.

MAbs. 2019 May/Jun;11(4):747-756. doi: 10.1080/19420862.2019.1589851. Epub 2019 Mar 26.


CDS in a Learning Health Care System: Identifying Physicians' Reasons for Rejection of Best-Practice Recommendations in Pneumonia through Computerized Clinical Decision Support.

Jones BE, Collingridge DS, Vines CG, Post H, Holmen J, Allen TL, Haug P, Weir CR, Dean NC.

Appl Clin Inform. 2019 Jan;10(1):1-9. doi: 10.1055/s-0038-1676587. Epub 2019 Jan 2.


IL-6: a cytokine at the crossroads of autoimmunity.

Jones BE, Maerz MD, Buckner JH.

Curr Opin Immunol. 2018 Dec;55:9-14. doi: 10.1016/j.coi.2018.09.002. Epub 2018 Sep 21. Review.


Discharge and Role of Acetylcholine Pontomesencephalic Neurons in Cortical Activity and Sleep-Wake States Examined by Optogenetics and Juxtacellular Recording in Mice.

Cissé Y, Toossi H, Ishibashi M, Mainville L, Leonard CS, Adamantidis A, Jones BE.

eNeuro. 2018 Sep 13;5(4). pii: ENEURO.0270-18.2018. doi: 10.1523/ENEURO.0270-18.2018. eCollection 2018 Jul-Aug.


Corrigendum to: The Effect of Aging on Acetaminophen Pharmacokinetics, Toxicity and Nrf2 in Fischer 344 Rats.

Mach J, Huizer-Pajkos A, Cogger VC, McKenzie C, Le Couteur DG, Jones BE, de Cabo R, Hilmer SN.

J Gerontol A Biol Sci Med Sci. 2019 Feb 15;74(3):332. doi: 10.1093/gerona/gly160. No abstract available.


The mysteries of sleep and waking unveiled by Michel Jouvet.

Jones BE.

Sleep Med. 2018 Sep;49:14-19. doi: 10.1016/j.sleep.2018.05.030. Epub 2018 Jun 6.


Multicenter study of QuantiFERON®-TB Gold Plus in patients with active tuberculosis.

Horne DJ, Jones BE, Kamada A, Fukushima K, Winthrop KL, Siegel SAR, Kovacs A, Anthony P, Meekin KA, Bhat S, Kerndt P, Chang A, Koelle DM, Narita M.

Int J Tuberc Lung Dis. 2018 Jun 1;22(6):617-621. doi: 10.5588/ijtld.17.0721.


In Data We Trust? Comparison of Electronic Versus Manual Abstraction of Antimicrobial Prescribing Quality Metrics for Hospitalized Veterans With Pneumonia.

Jones BE, Haroldsen C, Madaras-Kelly K, Goetz MB, Ying J, Sauer B, Jones MM, Leecaster M, Greene T, Fridkin SK, Neuhauser MM, Samore MH.

Med Care. 2018 Jul;56(7):626-633. doi: 10.1097/MLR.0000000000000916.


Development and Validation of a Natural Language Processing Tool to Identify Patients Treated for Pneumonia across VA Emergency Departments.

Jones BE, South BR, Shao Y, Lu CC, Leng J, Sauer BC, Gundlapalli AV, Samore MH, Zeng Q.

Appl Clin Inform. 2018 Jan;9(1):122-128. doi: 10.1055/s-0038-1626725. Epub 2018 Feb 21.


Homeostatic Changes in GABA and Acetylcholine Muscarinic Receptors on GABAergic Neurons in the Mesencephalic Reticular Formation following Sleep Deprivation.

Toossi H, Del Cid-Pellitero E, Jones BE.

eNeuro. 2018 Jan 3;4(6). pii: ENEURO.0269-17.2017. doi: 10.1523/ENEURO.0269-17.2017. eCollection 2017 Nov-Dec.


Short-Term Air Pollution and Incident Pneumonia. A Case-Crossover Study.

Pirozzi CS, Jones BE, VanDerslice JA, Zhang Y, Paine R 3rd, Dean NC.

Ann Am Thorac Soc. 2018 Apr;15(4):449-459. doi: 10.1513/AnnalsATS.201706-495OC.


How pupils on the autism spectrum make sense of themselves in the context of their experiences in a mainstream school setting: A qualitative metasynthesis.

Williams EI, Gleeson K, Jones BE.

Autism. 2019 Jan;23(1):8-28. doi: 10.1177/1362361317723836. Epub 2017 Nov 15.


Diversity of cultivated aerobic poly-hydrolytic bacteria in saline alkaline soils.

Sorokin DY, Kolganova TV, Khijniak TV, Jones BE, Kublanov IV.

PeerJ. 2017 Sep 25;5:e3796. doi: 10.7717/peerj.3796. eCollection 2017.


Manure from biochar, bentonite and zeolite feed supplemented poultry: Moisture retention and granulation properties.

Prasai TP, Walsh KB, Midmore DJ, Jones BEH, Bhattarai SP.

J Environ Manage. 2018 Jun 15;216:82-88. doi: 10.1016/j.jenvman.2017.08.040. Epub 2017 Sep 1.


Variation in Empiric Coverage Versus Detection of Methicillin-Resistant Staphylococcus aureus and Pseudomonas aeruginosa in Hospitalizations for Community-Onset Pneumonia Across 128 US Veterans Affairs Medical Centers.

Jones BE, Brown KA, Jones MM, Huttner BD, Greene T, Sauer BC, Madaras-Kelly K, Rubin MA, Bidwell Goetz M, Samore MH.

Infect Control Hosp Epidemiol. 2017 Aug;38(8):937-944. doi: 10.1017/ice.2017.98. Epub 2017 Jun 21.


Antibiotic Overuse: Clinicians Are the Solution.

Jones BE, Samore MH.

Ann Intern Med. 2017 Jun 6;166(11):844-845. doi: 10.7326/M17-1061. Epub 2017 May 9. No abstract available.


Principal cell types of sleep-wake regulatory circuits.

Jones BE.

Curr Opin Neurobiol. 2017 Jun;44:101-109. doi: 10.1016/j.conb.2017.03.018. Epub 2017 Apr 19. Review.


Homeostatic Changes in GABA and Glutamate Receptors on Excitatory Cortical Neurons during Sleep Deprivation and Recovery.

Del Cid-Pellitero E, Plavski A, Mainville L, Jones BE.

Front Syst Neurosci. 2017 Mar 31;11:17. doi: 10.3389/fnsys.2017.00017. eCollection 2017.


Respiratory Health Benefits and Risks of Living at Moderate Altitude.

Grissom CK, Jones BE.

High Alt Med Biol. 2018 Jun;19(2):109-115. doi: 10.1089/ham.2016.0142. Epub 2017 Apr 4. Review.


Homeostatic regulation through GABA and acetylcholine muscarinic receptors of motor trigeminal neurons following sleep deprivation.

Toossi H, Del Cid-Pellitero E, Jones BE.

Brain Struct Funct. 2017 Sep;222(7):3163-3178. doi: 10.1007/s00429-017-1392-4. Epub 2017 Mar 15.


Neuroscience: What Are Cortical Neurons Doing during Sleep?

Jones BE.

Curr Biol. 2016 Nov 7;26(21):R1147-R1150. doi: 10.1016/j.cub.2016.09.027.


Gene-Specific DNA Methylation Changes Predict Remission in Patients with ANCA-Associated Vasculitis.

Jones BE, Yang J, Muthigi A, Hogan SL, Hu Y, Starmer J, Henderson CD, Poulton CJ, Brant EJ, Pendergraft WF 3rd, Jennette JC, Falk RJ, Ciavatta DJ.

J Am Soc Nephrol. 2017 Apr;28(4):1175-1187. doi: 10.1681/ASN.2016050548. Epub 2016 Nov 7.


Histone modification signature at myeloperoxidase and proteinase 3 in patients with anti-neutrophil cytoplasmic autoantibody-associated vasculitis.

Yang J, Ge H, Poulton CJ, Hogan SL, Hu Y, Jones BE, Henderson CD, McInnis EA, Pendergraft WF 3rd, Jennette JC, Falk RJ, Ciavatta DJ.

Clin Epigenetics. 2016 Aug 12;8:85. doi: 10.1186/s13148-016-0251-0. eCollection 2016.


Performance of a Natural Language Processing (NLP) Tool to Extract Pulmonary Function Test (PFT) Reports from Structured and Semistructured Veteran Affairs (VA) Data.

Sauer BC, Jones BE, Globe G, Leng J, Lu CC, He T, Teng CC, Sullivan P, Zeng Q.

EGEMS (Wash DC). 2016 Jun 1;4(1):1217. doi: 10.13063/2327-9214.1217. eCollection 2016.


GABA Receptors on Orexin and Melanin-Concentrating Hormone Neurons Are Differentially Homeostatically Regulated Following Sleep Deprivation.

Toossi H, Del Cid-Pellitero E, Jones BE.

eNeuro. 2016 Jun 9;3(3). pii: ENEURO.0077-16.2016. doi: 10.1523/ENEURO.0077-16.2016. eCollection 2016 May-Jun.


Structural Brain Alterations Associated with Rapid Eye Movement Sleep Behavior Disorder in Parkinson's Disease.

Boucetta S, Salimi A, Dadar M, Jones BE, Collins DL, Dang-Vu TT.

Sci Rep. 2016 Jun 1;6:26782. doi: 10.1038/srep26782.


Statistical tools and control of internal lubricant content of inhalation grade HPMC capsules during manufacture.

Ayala G, Díez F, Gassó MT, Jones BE, Martín-Portugués R, Ramiro-Aparicio J.

Int J Pharm. 2016 Apr 30;503(1-2):36-40. doi: 10.1016/j.ijpharm.2016.02.017. Epub 2016 Feb 18.


Orexin Neurons Respond Differentially to Auditory Cues Associated with Appetitive versus Aversive Outcomes.

Hassani OK, Krause MR, Mainville L, Cordova CA, Jones BE.

J Neurosci. 2016 Feb 3;36(5):1747-57. doi: 10.1523/JNEUROSCI.3903-15.2016.


Pleural Effusions at First ED Encounter Predict Worse Clinical Outcomes in Patients With Pneumonia.

Dean NC, Griffith PP, Sorensen JS, McCauley L, Jones BE, Lee YC.

Chest. 2016 Jun;149(6):1509-15. doi: 10.1016/j.chest.2015.12.027. Epub 2016 Jan 16.


Evaluating the sensitivity, reproducibility and flexibility of a method to test hard shell capsules intended for use in dry powder inhalers.

Chong RH, Jones BE, Díez F, Birchall JC, Coulman SA.

Int J Pharm. 2016 Mar 16;500(1-2):316-25. doi: 10.1016/j.ijpharm.2016.01.034. Epub 2016 Jan 19.


Namib Desert dune/interdune transects exhibit habitat-specific edaphic bacterial communities.

Ronca S, Ramond JB, Jones BE, Seely M, Cowan DA.

Front Microbiol. 2015 Sep 4;6:845. doi: 10.3389/fmicb.2015.00845. eCollection 2015.


Trends in Antibiotic Use and Nosocomial Pathogens in Hospitalized Veterans With Pneumonia at 128 Medical Centers, 2006-2010.

Jones BE, Jones MM, Huttner B, Stoddard G, Brown KA, Stevens VW, Greene T, Sauer B, Madaras-Kelly K, Rubin M, Goetz MB, Samore M.

Clin Infect Dis. 2015 Nov 1;61(9):1403-10. doi: 10.1093/cid/civ629. Epub 2015 Jul 29.


Investigation on the aerosol performance of dry powder inhalation hypromellose capsules with different lubricant levels.

Saleem IY, Diez F, Jones BE, Kayali N, Polo L.

Int J Pharm. 2015 Aug 15;492(1-2):258-63. doi: 10.1016/j.ijpharm.2015.07.034. Epub 2015 Jul 18.


Variation in Outpatient Antibiotic Prescribing for Acute Respiratory Infections in the Veteran Population: A Cross-sectional Study.

Jones BE, Sauer B, Jones MM, Campo J, Damal K, He T, Ying J, Greene T, Goetz MB, Neuhauser MM, Hicks LA, Samore MH.

Ann Intern Med. 2015 Jul 21;163(2):73-80. doi: 10.7326/M14-1933.


Myostatin Neutralization Results in Preservation of Muscle Mass and Strength in Preclinical Models of Tumor-Induced Muscle Wasting.

Smith RC, Cramer MS, Mitchell PJ, Capen A, Huber L, Wang R, Myers L, Jones BE, Eastwood BJ, Ballard D, Hanson J, Credille KM, Wroblewski VJ, Lin BK, Heuer JG.

Mol Cancer Ther. 2015 Jul;14(7):1661-70. doi: 10.1158/1535-7163.MCT-14-0681. Epub 2015 Apr 23.


Impact of an Electronic Clinical Decision Support Tool for Emergency Department Patients With Pneumonia.

Dean NC, Jones BE, Jones JP, Ferraro JP, Post HB, Aronsky D, Vines CG, Allen TL, Haug PJ.

Ann Emerg Med. 2015 Nov;66(5):511-20. doi: 10.1016/j.annemergmed.2015.02.003. Epub 2015 Feb 26.


Diagnosis of latent tuberculosis infection with T-SPOT(®).TB in a predominantly immigrant population with rheumatologic disorders.

Escalante P, Kooda KJ, Khan R, Aye SS, Christianakis S, Arkfeld DG, Ehresmann GR, Kort JJ, Jones BE.

Lung. 2015 Feb;193(1):3-11. doi: 10.1007/s00408-014-9655-9. Epub 2014 Oct 16.


Validating hospital admission criteria for decision support in pneumonia.

Jones BE, Jones JP, Vines CG, Dean NC.

BMC Pulm Med. 2014 Sep 22;14:149. doi: 10.1186/1471-2466-14-149.


Discharge profiles across the sleep-waking cycle of identified cholinergic, GABAergic, and glutamatergic neurons in the pontomesencephalic tegmentum of the rat.

Boucetta S, Cissé Y, Mainville L, Morales M, Jones BE.

J Neurosci. 2014 Mar 26;34(13):4708-27. doi: 10.1523/JNEUROSCI.2617-13.2014.


Disseminating contingency management: impacts of staff training and implementation at an opiate treatment program.

Hartzler B, Jackson TR, Jones BE, Beadnell B, Calsyn DA.

J Subst Abuse Treat. 2014 Apr;46(4):429-38. doi: 10.1016/j.jsat.2013.12.007. Epub 2013 Dec 21.


Aquatic ecosystem response to timber harvesting for the purpose of restoring aspen.

Jones BE, Krupa M, Tate KW.

PLoS One. 2013 Dec 20;8(12):e84561. doi: 10.1371/journal.pone.0084561. eCollection 2013.


The role of Hcrt/Orx and MCH neurons in sleep-wake state regulation.

Jones BE, Hassani OK.

Sleep. 2013 Dec 1;36(12):1769-72. doi: 10.5665/sleep.3188. Review. No abstract available.

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