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The comparative genomics and complex population history of Papio baboons.

Rogers J, Raveendran M, Harris RA, Mailund T, Leppälä K, Athanasiadis G, Schierup MH, Cheng J, Munch K, Walker JA, Konkel MK, Jordan V, Steely CJ, Beckstrom TO, Bergey C, Burrell A, Schrempf D, Noll A, Kothe M, Kopp GH, Liu Y, Murali S, Billis K, Martin FJ, Muffato M, Cox L, Else J, Disotell T, Muzny DM, Phillips-Conroy J, Aken B, Eichler EE, Marques-Bonet T, Kosiol C, Batzer MA, Hahn MW, Tung J, Zinner D, Roos C, Jolly CJ, Gibbs RA, Worley KC; Baboon Genome Analysis Consortium.

Sci Adv. 2019 Jan 30;5(1):eaau6947. doi: 10.1126/sciadv.aau6947. eCollection 2019 Jan.


A Novel Method for Clinical Cochlear Duct Length Estimation toward Patient-Specific Cochlear Implant Selection.

Schurzig D, Timm ME, Batsoulis C, Salcher R, Sieber D, Jolly C, Lenarz T, Zoka-Assadi M.

OTO Open. 2018 Oct 2;2(4):2473974X18800238. doi: 10.1177/2473974X18800238. eCollection 2018 Oct-Dec.


Comparison of vitamin D metabolites in wild and captive baboons.

Ziegler TE, Kapoor A, Binkley NC, Rice KS, Rogers J, Jolly CJ, Phillips-Conroy JE.

Am J Primatol. 2018 Dec;80(12):e22935. doi: 10.1002/ajp.22935.


Evolution of DNA Methylation in Papio Baboons.

Vilgalys TP, Rogers J, Jolly CJ, Mukherjee S, Tung J.

Mol Biol Evol. 2019 Mar 1;36(3):527-540. doi: 10.1093/molbev/msy227.


An Atypical Parvovirus Drives Chronic Tubulointerstitial Nephropathy and Kidney Fibrosis.

Roediger B, Lee Q, Tikoo S, Cobbin JCA, Henderson JM, Jormakka M, O'Rourke MB, Padula MP, Pinello N, Henry M, Wynne M, Santagostino SF, Brayton CF, Rasmussen L, Lisowski L, Tay SS, Harris DC, Bertram JF, Dowling JP, Bertolino P, Lai JH, Wu W, Bachovchin WW, Wong JJ, Gorrell MD, Shaban B, Holmes EC, Jolly CJ, Monette S, Weninger W.

Cell. 2018 Oct 4;175(2):530-543.e24. doi: 10.1016/j.cell.2018.08.013. Epub 2018 Sep 13.


Genetic regulation of antibody responsiveness to immunization in substrains of BALB/c mice.

Poyntz HC, Jones A, Jauregui R, Young W, Gestin A, Mooney A, Lamiable O, Altermann E, Schmidt A, Gasser O, Weyrich L, Jolly CJ, Linterman MA, Gros GL, Hawkins ED, Forbes-Blom E.

Immunol Cell Biol. 2019 Jan;97(1):39-53. doi: 10.1111/imcb.12199. Epub 2018 Oct 14.


The utility of HepaRG cells for bioenergetic investigation and detection of drug-induced mitochondrial toxicity.

Kamalian L, Douglas O, Jolly CE, Snoeys J, Simic D, Monshouwer M, Williams DP, Kevin Park B, Chadwick AE.

Toxicol In Vitro. 2018 Dec;53:136-147. doi: 10.1016/j.tiv.2018.08.001. Epub 2018 Aug 7.


Timing somatic events in the evolution of cancer.

Jolly C, Van Loo P.

Genome Biol. 2018 Jul 24;19(1):95. doi: 10.1186/s13059-018-1476-3. Review.


Characterization of Wild and Captive Baboon Gut Microbiota and Their Antibiotic Resistomes.

Tsukayama P, Boolchandani M, Patel S, Pehrsson EC, Gibson MK, Chiou KL, Jolly CJ, Rogers J, Phillips-Conroy JE, Dantas G.

mSystems. 2018 Jun 26;3(3). pii: e00016-18. doi: 10.1128/mSystems.00016-18. eCollection 2018 May-Jun.


The perils of paradise: an endangered species conserved on an island loses antipredator behaviours within 13 generations.

Jolly CJ, Webb JK, Phillips BL.

Biol Lett. 2018 Jun;14(6). pii: 20180222. doi: 10.1098/rsbl.2018.0222.


Challenging aspects of contemporary cochlear implant electrode array design.

Mistrík P, Jolly C, Sieber D, Hochmair I.

World J Otorhinolaryngol Head Neck Surg. 2018 Mar 30;3(4):192-199. doi: 10.1016/j.wjorl.2017.12.007. eCollection 2017 Dec. Review.


SAMHD1 enhances immunoglobulin hypermutation by promoting transversion mutation.

Thientosapol ES, Bosnjak D, Durack T, Stevanovski I, van Geldermalsen M, Holst J, Jahan Z, Shepard C, Weninger W, Kim B, Brink R, Jolly CJ.

Proc Natl Acad Sci U S A. 2018 May 8;115(19):4921-4926. doi: 10.1073/pnas.1719771115. Epub 2018 Apr 18.


A computational reconstruction of Papio phylogeny using Alu insertion polymorphisms.

Jordan VE, Walker JA, Beckstrom TO, Steely CJ, McDaniel CL, St Romain CP; Baboon Genome Analysis Consortium, Worley KC, Phillips-Conroy J, Jolly CJ, Rogers J, Konkel MK, Batzer MA.

Mob DNA. 2018 Apr 5;9:13. doi: 10.1186/s13100-018-0118-3. eCollection 2018.


Morphological variation in the genus Chlorocebus: Ecogeographic and anthropogenically mediated variation in body mass, postcranial morphology, and growth.

Turner TR, Schmitt CA, Cramer JD, Lorenz J, Grobler JP, Jolly CJ, Freimer NB.

Am J Phys Anthropol. 2018 Jul;166(3):682-707. doi: 10.1002/ajpa.23459. Epub 2018 Mar 25.


An overview of cochlear implant electrode array designs.

Dhanasingh A, Jolly C.

Hear Res. 2017 Dec;356:93-103. doi: 10.1016/j.heares.2017.10.005. Epub 2017 Oct 18. Review.


Alu Insertion Polymorphisms as Evidence for Population Structure in Baboons.

Steely CJ, Walker JA, Jordan VE, Beckstrom TO, McDaniel CL, St Romain CP, Bennett EC, Robichaux A, Clement BN, Raveendran M; Baboon Genome Analysis Consortium, Worley KC, Phillips-Conroy J, Jolly CJ, Rogers J, Konkel MK, Batzer MA.

Genome Biol Evol. 2017 Sep 1;9(9):2418-2427. doi: 10.1093/gbe/evx184.


Effects of Obesity on the Regulation of Macrophage Population in the Prostate Tumor Microenvironment.

Galván GC, Johnson CB, Price RS, Liss MA, Jolly CA, deGraffenried LA.

Nutr Cancer. 2017 Oct;69(7):996-1002. doi: 10.1080/01635581.2017.1359320. Epub 2017 Sep 25.


Local inner ear application of dexamethasone in cochlear implant models is safe for auditory neurons and increases the neuroprotective effect of chronic electrical stimulation.

Scheper V, Hessler R, Hütten M, Wilk M, Jolly C, Lenarz T, Paasche G.

PLoS One. 2017 Aug 31;12(8):e0183820. doi: 10.1371/journal.pone.0183820. eCollection 2017.


NANOCI-Nanotechnology Based Cochlear Implant With Gapless Interface to Auditory Neurons.

Senn P, Roccio M, Hahnewald S, Frick C, Kwiatkowska M, Ishikawa M, Bako P, Li H, Edin F, Liu W, Rask-Andersen H, Pyykkö I, Zou J, Mannerström M, Keppner H, Homsy A, Laux E, Llera M, Lellouche JP, Ostrovsky S, Banin E, Gedanken A, Perkas N, Wank U, Wiesmüller KH, Mistrík P, Benav H, Garnham C, Jolly C, Gander F, Ulrich P, Müller M, Löwenheim H.

Otol Neurotol. 2017 Sep;38(8):e224-e231. doi: 10.1097/MAO.0000000000001439. Review.


Preclinical Evaluation of the Short-Term Toxicity of 4-(N)-Docosahexaenoyl 2´, 2´- Difluorodeoxycytidine (DHA-dFdC).

Valdes S, Naguib YW, Finch RA, Baze WB, Jolly CA, Cui Z.

Pharm Res. 2017 Jun;34(6):1224-1232. doi: 10.1007/s11095-017-2139-x. Epub 2017 Mar 28.


Seroprevalence of Zika Virus in Wild African Green Monkeys and Baboons.

Buechler CR, Bailey AL, Weiler AM, Barry GL, Breitbach ME, Stewart LM, Jasinska AJ, Freimer NB, Apetrei C, Phillips-Conroy JE, Jolly CJ, Rogers J, Friedrich TC, O'Connor DH.

mSphere. 2017 Mar 8;2(2). pii: e00392-16. doi: 10.1128/mSphere.00392-16. eCollection 2017 Mar-Apr.


Combination antiretroviral therapy and cell-cell spread of wild-type and drug-resistant human immunodeficiency virus-1.

Titanji BK, Pillay D, Jolly C.

J Gen Virol. 2017 Apr;98(4):821-834. doi: 10.1099/jgv.0.000728. Epub 2017 May 5.


HIV-1 Activates T Cell Signaling Independently of Antigen to Drive Viral Spread.

Len ACL, Starling S, Shivkumar M, Jolly C.

Cell Rep. 2017 Jan 24;18(4):1062-1074. doi: 10.1016/j.celrep.2016.12.057.


Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast.

Jeffares DC, Jolly C, Hoti M, Speed D, Shaw L, Rallis C, Balloux F, Dessimoz C, Bähler J, Sedlazeck FJ.

Nat Commun. 2017 Jan 24;8:14061. doi: 10.1038/ncomms14061.


Proximity to AGCT sequences dictates MMR-independent versus MMR-dependent mechanisms for AID-induced mutation via UNG2.

Thientosapol ES, Sharbeen G, Lau KKE, Bosnjak D, Durack T, Stevanovski I, Weninger W, Jolly CJ.

Nucleic Acids Res. 2017 Apr 7;45(6):3146-3157. doi: 10.1093/nar/gkw1300.


The pro-fibrotic role of dipeptidyl peptidase 4 in carbon tetrachloride-induced experimental liver injury.

Wang XM, Holz LE, Chowdhury S, Cordoba SP, Evans KA, Gall MG, Vieira de Ribeiro AJ, Zheng YZ, Levy MT, Yu DM, Yao TW, Polak N, Jolly CJ, Bertolino P, McCaughan GW, Gorrell MD.

Immunol Cell Biol. 2017 May;95(5):443-453. doi: 10.1038/icb.2016.116. Epub 2016 Nov 30.


LFA-1 Engagement Triggers T Cell Polarization at the HIV-1 Virological Synapse.

Starling S, Jolly C.

J Virol. 2016 Oct 14;90(21):9841-9854. doi: 10.1128/JVI.01152-16. Print 2016 Nov 1.


Functional Characterisation of Eel Dopamine D2 Receptors and Involvement in the Direct Inhibition of Pituitary Gonadotrophins.

Jolly C, Rousseau K, Prézeau L, Vol C, Tomkiewicz J, Dufour S, Pasqualini C.

J Neuroendocrinol. 2016 Sep;28(9). doi: 10.1111/jne.12411.


Optimal electrode length to match patient specific cochlear anatomy.

Mistrík P, Jolly C.

Eur Ann Otorhinolaryngol Head Neck Dis. 2016 Jun;133 Suppl 1:S68-71. doi: 10.1016/j.anorl.2016.05.001. Epub 2016 May 27. Review.


Dopamine pathway is highly diverged in primate species that differ markedly in social behavior.

Bergey CM, Phillips-Conroy JE, Disotell TR, Jolly CJ.

Proc Natl Acad Sci U S A. 2016 May 31;113(22):6178-81. doi: 10.1073/pnas.1525530113. Epub 2016 May 2.


Versatile, mild, and selective reduction of various carbonyl groups using an electron-deficient boron catalyst.

Lucas KM, Kleman AF, Sadergaski LR, Jolly CL, Bollinger BS, Mackesey BL, McGrath NA.

Org Biomol Chem. 2016 Jun 15;14(24):5774-8. doi: 10.1039/c6ob00127k.


Sources of variation in hair cortisol in wild and captive non-human primates.

Fourie NH, Brown JL, Jolly CJ, Phillips-Conroy JE, Rogers J, Bernstein RM.

Zoology (Jena). 2016 Apr;119(2):119-125. doi: 10.1016/j.zool.2016.01.001. Epub 2016 Feb 2.


Impedance Changes and Fibrous Tissue Growth after Cochlear Implantation Are Correlated and Can Be Reduced Using a Dexamethasone Eluting Electrode.

Wilk M, Hessler R, Mugridge K, Jolly C, Fehr M, Lenarz T, Scheper V.

PLoS One. 2016 Feb 3;11(2):e0147552. doi: 10.1371/journal.pone.0147552. eCollection 2016.


Mitochondrial Glycerol-3-Phosphate Acyltransferase-Dependent Phospholipid Synthesis Modulates Phospholipid Mass and IL-2 Production in Jurkat T Cells.

Faris R, Weber MM, Seeger DR, Cavazos D, de Graffenried L, Murphy EJ, Jolly CA.

Lipids. 2016 Mar;51(3):291-301. doi: 10.1007/s11745-016-4121-5. Epub 2016 Jan 21.


Zoonotic Potential of Simian Arteriviruses.

Bailey AL, Lauck M, Sibley SD, Friedrich TC, Kuhn JH, Freimer NB, Jasinska AJ, Phillips-Conroy JE, Jolly CJ, Marx PA, Apetrei C, Rogers J, Goldberg TL, O'Connor DH.

J Virol. 2015 Nov 11;90(2):630-5. doi: 10.1128/JVI.01433-15. Print 2016 Jan 15. Review.


The impact of invasive cane toads on native wildlife in southern Australia.

Jolly CJ, Shine R, Greenlees MJ.

Ecol Evol. 2015 Aug 24;5(18):3879-94. doi: 10.1002/ece3.1657. eCollection 2015 Sep.


Cesarean analgesia using levobupivacaine continuous wound infiltration: a randomized trial.

Jolly C, Jathières F, Keïta H, Jaouen E, Guyot B, Torre A.

Eur J Obstet Gynecol Reprod Biol. 2015 Nov;194:125-30. doi: 10.1016/j.ejogrb.2015.08.023. Epub 2015 Aug 25.


In vitro and in vivo pharmacokinetic study of a dexamethasone-releasing silicone for cochlear implants.

Liu Y, Jolly C, Braun S, Stark T, Scherer E, Plontke SK, Kiefer J.

Eur Arch Otorhinolaryngol. 2016 Jul;273(7):1745-53. doi: 10.1007/s00405-015-3760-0. Epub 2015 Aug 29.


Cochlear Dummy Electrodes for Insertion Training and Research Purposes: Fabrication, Mechanical Characterization, and Experimental Validation.

Kobler JP, Dhanasingh A, Kiran R, Jolly C, Ortmaier T.

Biomed Res Int. 2015;2015:574209. doi: 10.1155/2015/574209. Epub 2015 Jul 5.


Effects of a dexamethasone-releasing implant on cochleae: A functional, morphological and pharmacokinetic study.

Liu Y, Jolly C, Braun S, Janssen T, Scherer E, Steinhoff J, Ebenhoch H, Lohner A, Stark T, Kiefer J.

Hear Res. 2015 Sep;327:89-101. doi: 10.1016/j.heares.2015.04.019. Epub 2015 May 15.


Management of refractory overactive bladder in children by transcutaneous posterior tibial nerve stimulation: A controlled study.

Boudaoud N, Binet A, Line A, Chaouadi D, Jolly C, Fiquet CF, Ripert T, Merol ML.

J Pediatr Urol. 2015 Jun;11(3):138.e1-10. doi: 10.1016/j.jpurol.2014.09.013. Epub 2015 Mar 31.


Variation of hair cortisol concentrations among wild populations of two baboon species (Papio anubis, P. hamadryas) and a population of their natural hybrids.

Fourie NH, Jolly CJ, Phillips-Conroy JE, Brown JL, Bernstein RM.

Primates. 2015 Jul;56(3):259-72. doi: 10.1007/s10329-015-0469-z. Epub 2015 Apr 23.


Hybrid spreading mechanisms and T cell activation shape the dynamics of HIV-1 infection.

Zhang C, Zhou S, Groppelli E, Pellegrino P, Williams I, Borrow P, Chain BM, Jolly C.

PLoS Comput Biol. 2015 Apr 2;11(4):e1004179. doi: 10.1371/journal.pcbi.1004179. eCollection 2015 Apr.


Neutralisation of HIV-1 cell-cell spread by human and llama antibodies.

McCoy LE, Groppelli E, Blanchetot C, de Haard H, Verrips T, Rutten L, Weiss RA, Jolly C.

Retrovirology. 2014 Oct 2;11:83. doi: 10.1186/s12977-014-0083-y.


Imaging cochlear implantation with round window insertion in human temporal bones and cochlear morphological variation using high-resolution cone beam CT.

Zou J, Lähelmä J, Koivisto J, Dhanasingh A, Jolly C, Aarnisalo A, Wolff J, Pyykkö I.

Acta Otolaryngol. 2015 May;135(5):466-72. doi: 10.3109/00016489.2014.993090. Epub 2015 Feb 13.


Age-related increase in IL-17 activates pro-inflammatory signaling in prostate cells.

De Angulo A, Faris R, Daniel B, Jolly C, deGraffenried L.

Prostate. 2015 Apr 1;75(5):449-62. doi: 10.1002/pros.22931. Epub 2015 Jan 5.


Deep electrode insertion and sound coding in cochlear implants.

Hochmair I, Hochmair E, Nopp P, Waller M, Jolly C.

Hear Res. 2015 Apr;322:14-23. doi: 10.1016/j.heares.2014.10.006. Epub 2014 Oct 22. Review.


ARHGAP18: an endogenous inhibitor of angiogenesis, limiting tip formation and stabilizing junctions.

Chang GH, Lay AJ, Ting KK, Zhao Y, Coleman PR, Powter EE, Formaz-Preston A, Jolly CJ, Bower NI, Hogan BM, Rinkwitz S, Becker TS, Vadas MA, Gamble JR.

Small GTPases. 2014;5(3):1-15. doi: 10.4161/21541248.2014.975002.


Retromer regulates HIV-1 envelope glycoprotein trafficking and incorporation into virions.

Groppelli E, Len AC, Granger LA, Jolly C.

PLoS Pathog. 2014 Nov 13;10(10):e1004518. doi: 10.1371/journal.ppat.1004518. eCollection 2014 Oct.


Gene expression pattern after insertion of dexamethasone-eluting electrode into the guinea pig cochlea.

Takumi Y, Nishio SY, Mugridge K, Oguchi T, Hashimoto S, Suzuki N, Iwasaki S, Jolly C, Usami S.

PLoS One. 2014 Oct 20;9(10):e110238. doi: 10.1371/journal.pone.0110238. eCollection 2014.

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