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Items: 49

1.

Video Imprint.

Gao Z, Wang L, Jojic N, Niu Z, Zheng N, Hua G.

IEEE Trans Pattern Anal Mach Intell. 2018 Aug 20. doi: 10.1109/TPAMI.2018.2866114. [Epub ahead of print]

PMID:
30130178
2.

Deep learning of the regulatory grammar of yeast 5' untranslated regions from 500,000 random sequences.

Cuperus JT, Groves B, Kuchina A, Rosenberg AB, Jojic N, Fields S, Seelig G.

Genome Res. 2017 Dec;27(12):2015-2024. doi: 10.1101/gr.224964.117. Epub 2017 Nov 2.

3.

Traveling on discrete embeddings of gene expression.

Lovato P, Bicego M, Kesa M, Jojic N, Murino V, Perina A.

Artif Intell Med. 2016 Jun;70:1-11. doi: 10.1016/j.artmed.2016.05.002. Epub 2016 May 27.

PMID:
27431033
4.

European experience with methotrexate treatment in Crohn's disease: a multicenter retrospective analysis.

Kopylov U, Katsanos KH, van der Woude CJ, Karmiris K, Hernandez V, Odes S, Papamichael K, Koutroubakis IE, Bojic D, Kaimakliotis I, Fiorino G, Papageorgiou N, Pineda JR, Strongili K, Sanroman L, Mantzaris GJ, Jojic N, Paspatis G, Christodoulou DK, Ben-Horin S, Tsianos EV.

Eur J Gastroenterol Hepatol. 2016 Jul;28(7):802-6. doi: 10.1097/MEG.0000000000000609.

PMID:
26894634
5.

Optic Neuritis Associated or Not with TNF Antagonists in Patients with Inflammatory Bowel Disease.

Alexandre B, Vandermeeren Y, Dewit O, Moreels T, de Boer N, Dhar A, Ziady C, Shitrit AB, Steinwurz F, Jojic N, Costantino G, Bihin B, Rahier JF, Katsanos KH; ECCO CONFER investigators.

J Crohns Colitis. 2016 May;10(5):541-8. doi: 10.1093/ecco-jcc/jjw003. Epub 2016 Jan 12.

6.

Supranormal thymic output up to 2 decades after HIV-1 infection.

Aguilera-Sandoval CR, Yang OO, Jojic N, Lovato P, Chen DY, Boechat MI, Cooper P, Zuo J, Ramirez C, Belzer M, Church JA, Krogstad P.

AIDS. 2016 Mar 13;30(5):701-11. doi: 10.1097/QAD.0000000000001010.

7.

HLA-A is a Predictor of Hepatitis B e Antigen Status in HIV-Positive African Adults.

Matthews PC, Carlson JM, Beloukas A, Malik A, Jooste P, Ogwu A, Shapiro R, Riddell L, Chen F, Luzzi G, Jesuthasan G, Jeffery K, Jojic N, Ndung'u T, Carrington M, Goulder PJ, Geretti AM, Klenerman P.

J Infect Dis. 2016 Apr 15;213(8):1248-52. doi: 10.1093/infdis/jiv592. Epub 2015 Dec 9.

8.

Capturing Spatial Interdependence in Image Features: The Counting Grid, an Epitomic Representation for Bags of Features.

Perina A, Jojic N.

IEEE Trans Pattern Anal Mach Intell. 2015 Dec;37(12):2374-87. doi: 10.1109/TPAMI.2015.2424864.

PMID:
26539844
9.

RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease.

Xiong HY, Alipanahi B, Lee LJ, Bretschneider H, Merico D, Yuen RK, Hua Y, Gueroussov S, Najafabadi HS, Hughes TR, Morris Q, Barash Y, Krainer AR, Jojic N, Scherer SW, Blencowe BJ, Frey BJ.

Science. 2015 Jan 9;347(6218):1254806. doi: 10.1126/science.1254806. Epub 2014 Dec 18.

10.

Mapping brains on grids of features for schizophrenia analysis.

Perina A, Peruzzo D, Maria Kesa, Jojic N, Murino V, Bellani M, Brambilla P, Castellani U.

Med Image Comput Comput Assist Interv. 2014;17(Pt 2):805-12.

PMID:
25485454
11.

The effectiveness and safety of rescue treatments in 108 patients with steroid-refractory ulcerative colitis with sequential rescue therapies in a subgroup of patients.

Protic M, Seibold F, Schoepfer A, Radojicic Z, Juillerat P, Bojic D, Mwinyi J, Mottet C, Jojic N, Beglinger C, Vavricka S, Rogler G, Frei P.

J Crohns Colitis. 2014 Nov;8(11):1427-37. doi: 10.1016/j.crohns.2014.05.004. Epub 2014 Jun 5.

PMID:
24908178
12.

Differential T-cell responses of semi-immune and susceptible malaria subjects to in silico predicted and synthetic peptides of Plasmodium falciparum.

Dinga JN, Kimbung Mbandi S, Cho-Ngwa F, Fon NP, Moliki J, Efeti RM, Nyasa BR, Anong DN, Jojic N, Heckerman D, Wang R, Titanji VP.

Acta Trop. 2014 Jul;135:104-21. doi: 10.1016/j.actatropica.2014.03.007. Epub 2014 Mar 26.

PMID:
24681218
13.

Bags of words models of epitope sets: HIV viral load regression with counting grids.

Perina A, Lovato P, Jojic N.

Pac Symp Biocomput. 2014:288-99.

14.

HLA targeting efficiency correlates with human T-cell response magnitude and with mortality from influenza A infection.

Hertz T, Oshansky CM, Roddam PL, DeVincenzo JP, Caniza MA, Jojic N, Mallal S, Phillips E, James I, Halloran ME, Thomas PG, Corey L.

Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13492-7. doi: 10.1073/pnas.1221555110. Epub 2013 Jul 22.

15.

Hypolipidemic and antioxidant effects of buckwheat leaf and flower mixture in hyperlipidemic rats.

Ðurendić-Brenesel M, Popović T, Pilija V, Arsić A, Milić M, Kojić D, Jojić N, Milić N.

Bosn J Basic Med Sci. 2013 May;13(2):100-8.

16.

Clinical and pathological tools for identifying microsatellite instability in colorectal cancer.

Krivokapić Z, Marković S, Antić J, Dimitrijević I, Bojić D, Svorcan P, Jojić N, Damjanović S.

Croat Med J. 2012 Aug;53(4):328-35.

17.

Autoimmune polyglandular syndrome type 2, alopecia universalis and Crohn's disease.

Protic M, Gligorijevic V, Bojic D, Popovic B, Damjanovic S, Jojic N.

J Crohns Colitis. 2013 May;7(4):318-21. doi: 10.1016/j.crohns.2012.05.009. Epub 2012 Jun 5.

PMID:
22677116
18.

Challenges in estimating percent inclusion of alternatively spliced junctions from RNA-seq data.

Kakaradov B, Xiong HY, Lee LJ, Jojic N, Frey BJ.

BMC Bioinformatics. 2012 Apr 19;13 Suppl 6:S11. doi: 10.1186/1471-2105-13-S6-S11.

19.

Free Energy Score Spaces: Using Generative Information in Discriminative Classifiers.

Perina A, Cristani M, Castellani U, Murino V, Jojic N.

IEEE Trans Pattern Anal Mach Intell. 2012 Jul;34(7):1249-62. doi: 10.1109/TPAMI.2011.241. Epub 2012 Jan 3.

PMID:
22156097
20.

Nonparametric combinatorial sequence models.

Wauthier FL, Jordan MI, Jojic N.

J Comput Biol. 2011 Nov;18(11):1649-60. doi: 10.1089/cmb.2011.0175. Epub 2011 Nov 2.

PMID:
22047543
21.

Machine learning competition in immunology - Prediction of HLA class I binding peptides.

Zhang GL, Ansari HR, Bradley P, Cawley GC, Hertz T, Hu X, Jojic N, Kim Y, Kohlbacher O, Lund O, Lundegaard C, Magaret CA, Nielsen M, Papadopoulos H, Raghava GP, Tal VS, Xue LC, Yanover C, Zhu S, Rock MT, Crowe JE, Panayiotou C, Polycarpou MM, Duch W, Brusic V.

J Immunol Methods. 2011 Nov 30;374(1-2):1-4. doi: 10.1016/j.jim.2011.09.010. Epub 2011 Sep 29. No abstract available.

PMID:
21986107
22.

Expression analysis of genes involved in epigenetic regulation and apoptosis in human malignant haematopoietic cell lines treated with 5-azacytidine.

Stankov K, Bogdanovic G, Kojic V, Stankov S, Jojic N, Popovic L, Popovic S.

J BUON. 2011 Jan-Mar;16(1):116-22.

PMID:
21674861
23.

Increased breadth and depth of cytotoxic T lymphocytes responses against HIV-1-B Nef by inclusion of epitope variant sequences.

Rolland M, Frahm N, Nickle DC, Jojic N, Deng W, Allen TM, Brander C, Heckerman DE, Mullins JI.

PLoS One. 2011 Mar 28;6(3):e17969. doi: 10.1371/journal.pone.0017969.

24.

Mapping the landscape of host-pathogen coevolution: HLA class I binding and its relationship with evolutionary conservation in human and viral proteins.

Hertz T, Nolan D, James I, John M, Gaudieri S, Phillips E, Huang JC, Riadi G, Mallal S, Jojic N.

J Virol. 2011 Feb;85(3):1310-21. doi: 10.1128/JVI.01966-10. Epub 2010 Nov 17.

25.

The role of pelvic MRI in assesment of combined surgical and infliximab treatment for perianal Crohn's disease.

Gligorijević V, Spasić N, Bojić D, Protić M, Svorcan P, Maksimovic B, Marković V, Krivokapić Z, Jojić Nj.

Acta Chir Iugosl. 2010;57(3):89-95.

PMID:
21066991
26.

Modeling major histocompatibility complex binding by nonparametric averaging of multiple predictors and sequence encodings.

Huang JC, Jojic N.

J Immunol Methods. 2011 Nov 30;374(1-2):35-42. doi: 10.1016/j.jim.2010.10.001. Epub 2010 Oct 8.

PMID:
20934429
27.

Delayed-release oral mesalamine 4.8 g/day (800-mg tablet) is effective for patients with moderately active ulcerative colitis.

Sandborn WJ, Regula J, Feagan BG, Belousova E, Jojic N, Lukas M, Yacyshyn B, Krzeski P, Yeh CH, Messer CA, Hanauer SB.

Gastroenterology. 2009 Dec;137(6):1934-43.e1-3. doi: 10.1053/j.gastro.2009.08.069. Epub 2009 Sep 18.

PMID:
19766640
28.

Different levels of humoral immunoreactivity to different wheat cultivars gliadin are present in patients with celiac disease and in patients with multiple myeloma.

Konic-Ristic A, Dodig D, Krstic R, Jelic S, Stankovic I, Ninkovic A, Radic J, Besu I, Bonaci-Nikolic B, Jojic N, Djordjevic M, Popovic D, Juranic Z.

BMC Immunol. 2009 May 31;10:32. doi: 10.1186/1471-2172-10-32.

29.

Design, expression, and processing of epitomized hepatitis C virus-encoded CTL epitopes.

Yerly D, Heckerman D, Allen T, Suscovich TJ, Jojic N, Kadie C, Pichler WJ, Cerny A, Brander C.

J Immunol. 2008 Nov 1;181(9):6361-70.

30.

CARD15 gene polymorphisms in Serbian patients with Crohn's disease: genotype-phenotype analysis.

Protic MB, Pavlovic ST, Bojic DZ, Krstic MN, Radojicic ZA, Tarabar DK, Stevanovic AZ, Karan Djurasevic TZ, Godjevac MV, Svorcan PV, Dapcevic BD, Jojic NZ.

Eur J Gastroenterol Hepatol. 2008 Oct;20(10):978-84. doi: 10.1097/MEG.0b013e328302f45e.

PMID:
18787464
31.

Shift-invariant adaptive double threading: learning MHC II-peptide binding.

Zaitlen N, Reyes-Gomez M, Heckerman D, Jojic N.

J Comput Biol. 2008 Sep;15(7):927-42. doi: 10.1089/cmb.2007.0183.

PMID:
18771399
32.

Comparison of immunogen designs that optimize peptide coverage: reply to Fischer et al.

Nickle DC, Jojic N, Heckerman D, Jojic V, Kirovski D, Rolland M, Kosakovsky Pond S, Mullins JI.

PLoS Comput Biol. 2008 Jan;4(1):e25. doi: 10.1371/journal.pcbi.0040025. No abstract available. Erratum in: PLoS Comput Biol. 2008 Mar;4(3). doi: 10.1371/annotation/da2fae86-8f92-4d32-aefe-a30a1de7a8f8.

33.

Population sequencing using short reads: HIV as a case study.

Jojic V, Hertz T, Jojic N.

Pac Symp Biocomput. 2008:114-25.

34.

Recognition of HIV-1 peptides by host CTL is related to HIV-1 similarity to human proteins.

Rolland M, Nickle DC, Deng W, Frahm N, Brander C, Learn GH, Heckerman D, Jojic N, Jojic V, Walker BD, Mullins JI.

PLoS One. 2007 Sep 5;2(9):e823.

35.

Extensive HLA class I allele promiscuity among viral CTL epitopes.

Frahm N, Yusim K, Suscovich TJ, Adams S, Sidney J, Hraber P, Hewitt HS, Linde CH, Kavanagh DG, Woodberry T, Henry LM, Faircloth K, Listgarten J, Kadie C, Jojic N, Sango K, Brown NV, Pae E, Zaman MT, Bihl F, Khatri A, John M, Mallal S, Marincola FM, Walker BD, Sette A, Heckerman D, Korber BT, Brander C.

Eur J Immunol. 2007 Sep;37(9):2419-33.

36.

Structural polymorphism and diversifying selection on the pregnancy malaria vaccine candidate VAR2CSA.

Bockhorst J, Lu F, Janes JH, Keebler J, Gamain B, Awadalla P, Su XZ, Samudrala R, Jojic N, Smith JD.

Mol Biochem Parasitol. 2007 Oct;155(2):103-12. Epub 2007 Jun 26.

PMID:
17669514
37.

Coping with viral diversity in HIV vaccine design.

Nickle DC, Rolland M, Jensen MA, Pond SL, Deng W, Seligman M, Heckerman D, Mullins JI, Jojic N.

PLoS Comput Biol. 2007 Apr 27;3(4):e75.

38.

Learning MHC I--peptide binding.

Jojic N, Reyes-Gomez M, Heckerman D, Kadie C, Schueler-Furman O.

Bioinformatics. 2006 Jul 15;22(14):e227-35.

PMID:
16873476
39.

Mechanism of diarrhea in microscopic colitis.

Protic M, Jojic N, Bojic D, Milutinovic S, Necic D, Bojic B, Svorcan P, Krstic M, Popovic O.

World J Gastroenterol. 2005 Sep 21;11(35):5535-9.

40.

A comparison of algorithms for inference and learning in probabilistic graphical models.

Frey BJ, Jojic N.

IEEE Trans Pattern Anal Mach Intell. 2005 Sep;27(9):1392-416.

PMID:
16173184
41.

Circulating insulin-like growth factors in patients infected with Helicobacter pylori.

Baricević I, Nedić O, Nikolić JA, Bojić B, Jojić N.

Clin Biochem. 2004 Nov;37(11):997-1001.

PMID:
15498528
42.

Efficient approximations for learning phylogenetic HMM models from data.

Jojic V, Jojic N, Meek C, Geiger D, Siepel A, Haussler D, Heckerman D.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i161-8.

PMID:
15262795
43.

Primary malignant mesothelioma of the peritoneum.

Svorcan P, Djordjevic J, Colic N, Jojic N, Vukcevic V, Bojovic S, Dapcevic B.

Rom J Gastroenterol. 2003 Jun;12(2):135-7.

PMID:
12854001
44.

[Pharmacotherapy of inflammatory bowel disease].

Jojić N.

Acta Chir Iugosl. 2000;47(1-2):51-5. Review. Croatian.

PMID:
10953366
45.

Cholylsarcosine for bile acid deficiency caused by ileal resection.

Popović OS, Jojić N, Necić D.

Dig Dis Sci. 1999 Sep;44(9):1931-2. No abstract available.

PMID:
10505737
46.

Recurrent hemolytic uremic syndrome with hypocomplementemia and intestinal lymphangiectasia.

Bogdanović R, Stanković I, Jojić N, Ognjanović M, Zlatković M, Popović O, Nikolić V.

Nephron. 1997;76(4):481-4.

PMID:
9274848
47.

Propranolol for metronidazole-resistant giardiasis.

Popovic O, Jojic N, Milutinovic-Djuric S, Djurdjevic D, Milovic V.

Ital J Gastroenterol. 1991 Jul-Aug;23(6):359. No abstract available.

PMID:
1742528
48.

[The oral milk provocation test in patients with chronic urticaria].

Paranos S, Despotović N, Vidanović M, Bojović S, Jojić Nj.

Srp Arh Celok Lek. 1990 Jul-Aug;118(7-8):295-301. Serbian.

PMID:
2097779
49.

Sarcoidosis and protein losing enteropathy.

Popović OS, Brkić S, Bojić P, Kenić V, Jojić N, Djurić V, Djordjević N.

Gastroenterology. 1980 Jan;78(1):119-25.

PMID:
7350018

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