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Items: 1 to 50 of 72

1.

Realizations of kinetic differential equations.

Craciun G, Johnston MD, Szederkényi G, Tonello E, Tóth J, Yu PY.

Math Biosci Eng. 2019 Nov 6;17(1):862-892. doi: 10.3934/mbe.2020046.

2.

Capability for arsenic mobilization in groundwater is distributed across broad phylogenetic lineages.

Danczak RE, Johnston MD, Kenah C, Slattery M, Wilkins MJ.

PLoS One. 2019 Sep 6;14(9):e0221694. doi: 10.1371/journal.pone.0221694. eCollection 2019.

3.

Computing Weakly Reversible Deficiency Zero Network Translations Using Elementary Flux Modes.

Johnston MD, Burton E.

Bull Math Biol. 2019 May;81(5):1613-1644. doi: 10.1007/s11538-019-00579-z. Epub 2019 Feb 21.

PMID:
30790189
4.

A Deficiency-Based Approach to Parametrizing Positive Equilibria of Biochemical Reaction Systems.

Johnston MD, Müller S, Pantea C.

Bull Math Biol. 2019 Apr;81(4):1143-1172. doi: 10.1007/s11538-018-00562-0. Epub 2018 Dec 31.

5.

Viruses control dominant bacteria colonizing the terrestrial deep biosphere after hydraulic fracturing.

Daly RA, Roux S, Borton MA, Morgan DM, Johnston MD, Booker AE, Hoyt DW, Meulia T, Wolfe RA, Hanson AJ, Mouser PJ, Moore JD, Wunch K, Sullivan MB, Wrighton KC, Wilkins MJ.

Nat Microbiol. 2019 Feb;4(2):352-361. doi: 10.1038/s41564-018-0312-6. Epub 2018 Dec 3.

6.

Members of the Genus Methylobacter Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland.

Smith GJ, Angle JC, Solden LM, Borton MA, Morin TH, Daly RA, Johnston MD, Stefanik KC, Wolfe R, Gil B, Wrighton KC.

mBio. 2018 Nov 6;9(6). pii: e00815-18. doi: 10.1128/mBio.00815-18.

7.

Zeeman spectroscopy as a method for determining the magnetic field distribution in self-magnetic-pinch diodes (invited).

Patel SG, Johnston MD, Webb TJ, Bennett NL, Welch DR, Gilgenbach RM, Cuneo ME, Kiefer ML, Leckbee JJ, Mazarakis MG, Muron DJ, Renk TJ, Simpson SC, Doron R, Biswas S, Mikitchuk D, Maron Y.

Rev Sci Instrum. 2018 Oct;89(10):10D123. doi: 10.1063/1.5039386.

PMID:
30399676
8.

Photofragment Imaging, Spectroscopy, and Theory of MnO.

Johnston MD, Gentry MR, Metz RB.

J Phys Chem A. 2018 Oct 11;122(40):8047-8053. doi: 10.1021/acs.jpca.8b07849. Epub 2018 Oct 2.

PMID:
30226771
9.

Network Translation and Steady-State Properties of Chemical Reaction Systems.

Tonello E, Johnston MD.

Bull Math Biol. 2018 Sep;80(9):2306-2337. doi: 10.1007/s11538-018-0458-7. Epub 2018 Aug 7.

PMID:
30088181
10.

Microbial Community Cohesion Mediates Community Turnover in Unperturbed Aquifers.

Danczak RE, Johnston MD, Kenah C, Slattery M, Wilkins MJ.

mSystems. 2018 Jul 3;3(4). pii: e00066-18. doi: 10.1128/mSystems.00066-18. eCollection 2018 Jul-Aug.

11.

Photofragment imaging and electronic spectroscopy of Al2.

Johnston MD, Lockwood SP, Metz RB.

J Chem Phys. 2018 Jun 7;148(21):214308. doi: 10.1063/1.5034353.

PMID:
29884057
12.

A velocity map imaging mass spectrometer for photofragments of fast ion beams.

Johnston MD, Pearson WL 3rd, Wang G, Metz RB.

Rev Sci Instrum. 2018 Jan;89(1):014102. doi: 10.1063/1.5012896.

PMID:
29390723
13.

Coral physiology and microbiome dynamics under combined warming and ocean acidification.

Grottoli AG, Dalcin Martins P, Wilkins MJ, Johnston MD, Warner ME, Cai WJ, Melman TF, Hoadley KD, Pettay DT, Levas S, Schoepf V.

PLoS One. 2018 Jan 16;13(1):e0191156. doi: 10.1371/journal.pone.0191156. eCollection 2018.

14.

A computational approach to extinction events in chemical reaction networks with discrete state spaces.

Johnston MD.

Math Biosci. 2017 Dec;294:130-142. doi: 10.1016/j.mbs.2017.10.003. Epub 2017 Oct 10.

PMID:
29024749
15.

Conditions for extinction events in chemical reaction networks with discrete state spaces.

Johnston MD, Anderson DF, Craciun G, Brijder R.

J Math Biol. 2018 May;76(6):1535-1558. doi: 10.1007/s00285-017-1182-x. Epub 2017 Sep 26.

PMID:
28951955
16.

Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities.

Danczak RE, Johnston MD, Kenah C, Slattery M, Wrighton KC, Wilkins MJ.

Microbiome. 2017 Sep 2;5(1):112. doi: 10.1186/s40168-017-0331-1.

17.

Draft Genome Sequences of Multiple Frackibacter Strains Isolated from Hydraulically Fractured Shale Environments.

Booker AE, Johnston MD, Daly RA, Wrighton KC, Wilkins MJ.

Genome Announc. 2017 Aug 10;5(32). pii: e00608-17. doi: 10.1128/genomeA.00608-17.

18.

Anoxia stimulates microbially catalyzed metal release from Animas River sediments.

Saup CM, Williams KH, Rodríguez-Freire L, Cerrato JM, Johnston MD, Wilkins MJ.

Environ Sci Process Impacts. 2017 Apr 19;19(4):578-585. doi: 10.1039/c7em00036g.

19.

Abundant carbon substrates drive extremely high sulfate reduction rates and methane fluxes in Prairie Pothole Wetlands.

Dalcin Martins P, Hoyt DW, Bansal S, Mills CT, Tfaily M, Tangen BA, Finocchiaro RG, Johnston MD, McAdams BC, Solensky MJ, Smith GJ, Chin YP, Wilkins MJ.

Glob Chang Biol. 2017 Aug;23(8):3107-3120. doi: 10.1111/gcb.13633. Epub 2017 Feb 23.

PMID:
28117550
20.

A computational approach to persistence, permanence, and endotacticity of biochemical reaction systems.

Johnston MD, Pantea C, Donnell P.

J Math Biol. 2016 Jan;72(1-2):467-98. doi: 10.1007/s00285-015-0892-1. Epub 2015 May 19.

PMID:
25986743
21.

A Computational Approach to Steady State Correspondence of Regular and Generalized Mass Action Systems.

Johnston MD.

Bull Math Biol. 2015 Jun;77(6):1065-100. doi: 10.1007/s11538-015-0077-5. Epub 2015 Apr 21.

PMID:
25895700
22.

Worsening renal function in patients with acute decompensated heart failure treated with ultrafiltration: predictors and outcomes.

Raichlin E, Haglund NA, Dumitru I, Lyden ER, Johnston MD, Mack JM, Windle JR, Lowes BD.

J Card Fail. 2014 May;20(5):376.e25-32.

PMID:
25075395
23.

Vibrational spectroscopy of Co⁺(CH₄)n and Ni⁺(CH₄)n (n = 1-4).

Kocak A, Sallese Z, Johnston MD, Metz RB.

J Phys Chem A. 2014 May 8;118(18):3253-65. doi: 10.1021/jp500617n. Epub 2014 Apr 28.

PMID:
24739017
24.

Translated chemical reaction networks.

Johnston MD.

Bull Math Biol. 2014 May;76(5):1081-116. doi: 10.1007/s11538-014-9947-5. Epub 2014 Mar 8.

PMID:
24610094
25.

Stochastic analysis of biochemical reaction networks with absolute concentration robustness.

Anderson DF, Enciso GA, Johnston MD.

J R Soc Interface. 2014 Feb 12;11(93):20130943. doi: 10.1098/rsif.2013.0943. Print 2014 Apr 6.

26.

Worsening renal function in patients with acute decompensated heart failure treated with ultrafiltration: predictors and outcomes.

Raichlin E, Haglund NA, Dumitru I, Lyden ER, Johnston MD, Mack JM, Windle JR, Lowes BD.

J Card Fail. 2013 Dec;19(12):787-94. doi: 10.1016/j.cardfail.2013.10.011. Epub 2013 Nov 8. Erratum in: J Card Fail. 2014 May;20(5):376. Corrected and republished in: J Card Fail. 2014 May;20(5):376.e25-32.

PMID:
24216101
27.

Computing weakly reversible linearly conjugate chemical reaction networks with minimal deficiency.

Johnston MD, Siegel D, Szederkényi G.

Math Biosci. 2013 Jan;241(1):88-98. doi: 10.1016/j.mbs.2012.09.008. Epub 2012 Oct 16.

PMID:
23079395
28.

Absolute calibration method for nanosecond-resolved, time-streaked, fiber optic light collection, spectroscopy systems.

Johnston MD, Oliver BV, Droemer DW, Frogget B, Crain MD, Maron Y.

Rev Sci Instrum. 2012 Aug;83(8):083108. doi: 10.1063/1.4745385.

PMID:
22938275
29.

Antibiotic resistance is prevalent in an isolated cave microbiome.

Bhullar K, Waglechner N, Pawlowski A, Koteva K, Banks ED, Johnston MD, Barton HA, Wright GD.

PLoS One. 2012;7(4):e34953. doi: 10.1371/journal.pone.0034953. Epub 2012 Apr 11.

30.

Microwave, infrared and Raman spectra, r0 structural parameters, ab initio calculations and vibrational assignment of 1-fluoro-1-silacyclopentane.

Durig JR, Panikar SS, Obenchain DA, Bills BJ, Lohan PM, Peebles RA, Peebles SA, Groner P, Guirgis GA, Johnston MD.

J Chem Phys. 2012 Jan 28;136(4):044306. doi: 10.1063/1.3673889.

PMID:
22299870
31.

Establishing equivalence for microbial-growth-inhibitory effects ("iso-hurdle rules") by analyzing disparate listeria monocytogenes data with a gamma-type predictive model.

Pujol L, Kan-King-Yu D, Le Marc Y, Johnston MD, Rama-Heuzard F, Guillou S, McClure P, Membré JM.

Appl Environ Microbiol. 2012 Feb;78(4):1069-80. doi: 10.1128/AEM.06691-11. Epub 2011 Dec 9.

32.

Infrared and Raman spectra, ab initio calculations, conformational stability and vibrational assignment of 1-bromo-1-silacyclopentane.

Guirgis GA, Panikar SS, Klaassen JJ, Purohit SS, Johnston MD, Durig JR.

Spectrochim Acta A Mol Biomol Spectrosc. 2011 Sep;79(5):858-66. doi: 10.1016/j.saa.2011.02.048. Epub 2011 May 5.

PMID:
21689977
33.

Albumin-based microbubbles bind up-regulated scavenger receptors following vascular injury.

Anderson DR, Duryee MJ, Anchan RK, Garvin RP, Johnston MD, Porter TR, Thiele GM, Klassen LW.

J Biol Chem. 2010 Dec 24;285(52):40645-53. doi: 10.1074/jbc.M110.134809. Epub 2010 Oct 21.

34.

Variable renewal rate and growth properties of cell populations in colon crypts.

Di Garbo A, Johnston MD, Chapman SJ, Maini PK.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Jun;81(6 Pt 1):061909. Epub 2010 Jun 4.

PMID:
20866442
35.

On the proportion of cancer stem cells in a tumour.

Johnston MD, Maini PK, Jonathan Chapman S, Edwards CM, Bodmer WF.

J Theor Biol. 2010 Oct 21;266(4):708-11. doi: 10.1016/j.jtbi.2010.07.031. Epub 2010 Aug 3.

PMID:
20678505
36.

Examples of mathematical modeling: tales from the crypt.

Johnston MD, Edwards CM, Bodmer WF, Maini PK, Chapman SJ.

Cell Cycle. 2007 Sep 1;6(17):2106-12. Epub 2007 Jun 27.

37.

Mathematical modeling of cell population dynamics in the colonic crypt and in colorectal cancer.

Johnston MD, Edwards CM, Bodmer WF, Maini PK, Chapman SJ.

Proc Natl Acad Sci U S A. 2007 Mar 6;104(10):4008-13. Epub 2007 Feb 28.

38.

Dynamics of vaccination strategies via projected dynamical systems.

Cojocaru MG, Bauch CT, Johnston MD.

Bull Math Biol. 2007 Jul;69(5):1453-76. Epub 2007 Jan 18.

PMID:
17235708
39.

Intertrial sources of stimulus control and delayed matching-to-sample performance in humans.

Williams DC, Johnston MD, Saunders KJ.

J Exp Anal Behav. 2006 Sep;86(2):253-67.

40.

Mechanisms of inactivation of HSV-2 during storage in frozen and lyophilized forms.

Hansen RK, Zhai S, Skepper JN, Johnston MD, Alpar HO, Slater NK.

Biotechnol Prog. 2005 May-Jun;21(3):911-7.

PMID:
15932273
41.
42.

Red cell osmotic fragility studies in hemoglobin C-beta thalassemia: osmotically resistant microspherocytes.

Sears DA, Udden MM, Johnston MD.

Clin Lab Haematol. 2003 Dec;25(6):367-72.

PMID:
14641140
43.

Membrane damage to bacteria caused by single and combined biocides.

Johnston MD, Hanlon GW, Denyer SP, Lambert RJ.

J Appl Microbiol. 2003;94(6):1015-23.

44.

Theory of antimicrobial combinations: biocide mixtures - synergy or addition?

Lambert RJ, Johnston MD, Hanlon GW, Denyer SP.

J Appl Microbiol. 2003;94(4):747-59. Erratum in: J Appl Microbiol. 2003;95(1):202.

46.

A rapid method for assessing the suitability of quenching agents for individual biocides as well as combinations.

Johnston MD, Lambert RJ, Hanlon GW, Denyer SP.

J Appl Microbiol. 2002;92(4):784-9.

47.

The effect of interfering substances on the disinfection process: a mathematical model.

Lambert RJ, Johnston MD.

J Appl Microbiol. 2001 Sep;91(3):548-55.

48.

Identity matching of consonant-vowel-consonant words by prereaders.

Saunders KJ, Johnston MD, Brady NC.

J Appl Behav Anal. 2000 Fall;33(3):309-12.

49.
50.

One explanation for the variability of the bacterial suspension test.

Johnston MD, Simons EA, Lambert RJ.

J Appl Microbiol. 2000 Feb;88(2):237-42.

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