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Items: 11

1.

Genome-Wide Association Study to Find Modifiers for Tetralogy of Fallot in the 22q11.2 Deletion Syndrome Identifies Variants in the GPR98 Locus on 5q14.3.

Guo T, Repetto GM, McDonald McGinn DM, Chung JH, Nomaru H, Campbell CL, Blonska A, Bassett AS, Chow EWC, Mlynarski EE, Swillen A, Vermeesch J, Devriendt K, Gothelf D, Carmel M, Michaelovsky E, Schneider M, Eliez S, Antonarakis SE, Coleman K, Tomita-Mitchell A, Mitchell ME, Digilio MC, Dallapiccola B, Marino B, Philip N, Busa T, Kushan-Wells L, Bearden CE, Piotrowicz M, Hawuła W, Roberts AE, Tassone F, Simon TJ, van Duin EDA, van Amelsvoort TA, Kates WR, Zackai E, Johnston HR, Cutler DJ, Agopian AJ, Goldmuntz E, Mitchell LE, Wang T, Emanuel BS, Morrow BE; International 22q11.2 Consortium/Brain and Behavior Consortium*.

Circ Cardiovasc Genet. 2017 Oct;10(5). pii: e001690. doi: 10.1161/CIRCGENETICS.116.001690.

2.

Reply to Plüss et al.: The strength of PEMapper/PECaller lies in unbiased calling using large sample sizes.

Johnston HR, Chopra P, Wingo TS, Patel V, Epstein MP, Mulle JG, Warren ST, Zwick ME, Cutler DJ.

Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):E8323. doi: 10.1073/pnas.1714535114. Epub 2017 Sep 15. No abstract available.

3.

Identifying tagging SNPs for African specific genetic variation from the African Diaspora Genome.

Johnston HR, Hu YJ, Gao J, O'Connor TD, Abecasis GR, Wojcik GL, Gignoux CR, Gourraud PA, Lizee A, Hansen M, Genuario R, Bullis D, Lawley C, Kenny EE, Bustamante C, Beaty TH, Mathias RA, Barnes KC, Qin ZS; CAAPA Consortium.

Sci Rep. 2017 Apr 21;7:46398. doi: 10.1038/srep46398.

4.

PEMapper and PECaller provide a simplified approach to whole-genome sequencing.

Johnston HR, Chopra P, Wingo TS, Patel V; International Consortium on Brain and Behavior in 22q11.2 Deletion Syndrome, Epstein MP, Mulle JG, Warren ST, Zwick ME, Cutler DJ.

Proc Natl Acad Sci U S A. 2017 Mar 7;114(10):E1923-E1932. doi: 10.1073/pnas.1618065114. Epub 2017 Feb 21.

5.

A continuum of admixture in the Western Hemisphere revealed by the African Diaspora genome.

Mathias RA, Taub MA, Gignoux CR, Fu W, Musharoff S, O'Connor TD, Vergara C, Torgerson DG, Pino-Yanes M, Shringarpure SS, Huang L, Rafaels N, Boorgula MP, Johnston HR, Ortega VE, Levin AM, Song W, Torres R, Padhukasahasram B, Eng C, Mejia-Mejia DA, Ferguson T, Qin ZS, Scott AF, Yazdanbakhsh M, Wilson JG, Marrugo J, Lange LA, Kumar R, Avila PC, Williams LK, Watson H, Ware LB, Olopade C, Olopade O, Oliveira R, Ober C, Nicolae DL, Meyers D, Mayorga A, Knight-Madden J, Hartert T, Hansel NN, Foreman MG, Ford JG, Faruque MU, Dunston GM, Caraballo L, Burchard EG, Bleecker E, Araujo MI, Herrera-Paz EF, Gietzen K, Grus WE, Bamshad M, Bustamante CD, Kenny EE, Hernandez RD, Beaty TH, Ruczinski I, Akey J; CAAPA, Barnes KC.

Nat Commun. 2016 Oct 11;7:12522. doi: 10.1038/ncomms12522.

6.

Testing Rare-Variant Association without Calling Genotypes Allows for Systematic Differences in Sequencing between Cases and Controls.

Hu YJ, Liao P, Johnston HR, Allen AS, Satten GA.

PLoS Genet. 2016 May 6;12(5):e1006040. doi: 10.1371/journal.pgen.1006040. eCollection 2016 May.

7.

One Size Doesn't Fit All - RefEditor: Building Personalized Diploid Reference Genome to Improve Read Mapping and Genotype Calling in Next Generation Sequencing Studies.

Yuan S, Johnston HR, Zhang G, Li Y, Hu YJ, Qin ZS.

PLoS Comput Biol. 2015 Aug 12;11(8):e1004448. doi: 10.1371/journal.pcbi.1004448. eCollection 2015 Aug.

8.

Population genetics identifies challenges in analyzing rare variants.

Johnston HR, Hu Y, Cutler DJ.

Genet Epidemiol. 2015 Mar;39(3):145-8. doi: 10.1002/gepi.21881. Epub 2015 Jan 12.

9.

A comprehensive search for recombinogenic motifs in the human genome.

Johnston HR, Cutler DJ.

PLoS One. 2013 Apr 23;8(4):e62920. doi: 10.1371/journal.pone.0062920. Print 2013.

10.

Population demographic history can cause the appearance of recombination hotspots.

Johnston HR, Cutler DJ.

Am J Hum Genet. 2012 May 4;90(5):774-83. doi: 10.1016/j.ajhg.2012.03.011.

11.

Chemicals for subterranean termite control: results of long-term tests.

Johnston HR, Smith VK, Beal RH.

J Econ Entomol. 1971 Jun;64(3):745-8. No abstract available.

PMID:
5558285

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