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NFAT5/TonEBP controls early acquisition of notochord phenotypic markers, collagen composition, and sonic hedgehog signaling during mouse intervertebral disc embryogenesis.

Tessier S, Madhu V, Johnson ZI, Shapiro IM, Risbud MV.

Dev Biol. 2019 Jul 10. pii: S0012-1606(19)30100-9. doi: 10.1016/j.ydbio.2019.07.004. [Epub ahead of print]


Microbial communities across nearshore to offshore coastal transects are primarily shaped by distance and temperature.

Wang Z, Juarez DL, Pan JF, Blinebry SK, Gronniger J, Clark JS, Johnson ZI, Hunt DE.

Environ Microbiol. 2019 Jul 9. doi: 10.1111/1462-2920.14734. [Epub ahead of print]


Reused Cultivation Water Accumulates Dissolved Organic Carbon and Uniquely Influences Different Marine Microalgae.

Loftus SE, Johnson ZI.

Front Bioeng Biotechnol. 2019 May 14;7:101. doi: 10.3389/fbioe.2019.00101. eCollection 2019.


Pervasive iron limitation at subsurface chlorophyll maxima of the California Current.

Hogle SL, Dupont CL, Hopkinson BM, King AL, Buck KN, Roe KL, Stuart RK, Allen AE, Mann EL, Johnson ZI, Barbeau KA.

Proc Natl Acad Sci U S A. 2018 Dec 26;115(52):13300-13305. doi: 10.1073/pnas.1813192115. Epub 2018 Dec 10.


A High-Resolution Time Series Reveals Distinct Seasonal Patterns of Planktonic Fungi at a Temperate Coastal Ocean Site (Beaufort, North Carolina, USA).

Duan Y, Xie N, Song Z, Ward CS, Yung CM, Hunt DE, Johnson ZI, Wang G.

Appl Environ Microbiol. 2018 Oct 17;84(21). pii: e00967-18. doi: 10.1128/AEM.00967-18. Print 2018 Nov 1.


RNA binding protein HuR regulates extracellular matrix gene expression and pH homeostasis independent of controlling HIF-1α signaling in nucleus pulposus cells.

Pan H, Strickland A, Madhu V, Johnson ZI, Chand SN, Brody JR, Fertala A, Zheng Z, Shapiro IM, Risbud MV.

Matrix Biol. 2019 Apr;77:23-40. doi: 10.1016/j.matbio.2018.08.003. Epub 2018 Aug 7.


High phylogenetic diversity and abundance pattern of Labyrinthulomycete protists in the coastal waters of the Bohai Sea.

Xie N, Sen B, Song Z, Zhao Y, Chen Z, Shi W, Zhang Y, Zhang J, Johnson ZI, Wang G.

Environ Microbiol. 2018 Aug;20(8):3042-3056. doi: 10.1111/1462-2920.14341. Epub 2018 Aug 30.


Novel classification for global gene signature model for predicting severity of systemic sclerosis.

Johnson ZI, Jones JD, Mukherjee A, Ren D, Feghali-Bostwick C, Conley YP, Yates CC.

PLoS One. 2018 Jun 20;13(6):e0199314. doi: 10.1371/journal.pone.0199314. eCollection 2018.


COX-2 expression mediated by calcium-TonEBP signaling axis under hyperosmotic conditions serves osmoprotective function in nucleus pulposus cells.

Choi H, Chaiyamongkol W, Doolittle AC, Johnson ZI, Gogate SS, Schoepflin ZR, Shapiro IM, Risbud MV.

J Biol Chem. 2018 Jun 8;293(23):8969-8981. doi: 10.1074/jbc.RA117.001167. Epub 2018 Apr 26.


Degradation of hydrogen peroxide at the ocean's surface: the influence of the microbial community on the realized thermal niche of Prochlorococcus.

Ma L, Calfee BC, Morris JJ, Johnson ZI, Zinser ER.

ISME J. 2017 Oct 31. doi: 10.1038/ismej.2017.182. [Epub ahead of print]


Annual community patterns are driven by seasonal switching between closely related marine bacteria.

Ward CS, Yung CM, Davis KM, Blinebry SK, Williams TC, Johnson ZI, Hunt DE.

ISME J. 2017 Nov;11(11):2637. doi: 10.1038/ismej.2017.154.


Contrasting seasonal drivers of virus abundance and production in the North Pacific Ocean.

Gainer PJ, Pound HL, Larkin AA, LeCleir GR, DeBruyn JM, Zinser ER, Johnson ZI, Wilhelm SW.

PLoS One. 2017 Sep 7;12(9):e0184371. doi: 10.1371/journal.pone.0184371. eCollection 2017.


Multipotent stromal cells/mesenchymal stem cells and fibroblasts combine to minimize skin hypertrophic scarring.

Yates CC, Rodrigues M, Nuschke A, Johnson ZI, Whaley D, Stolz D, Newsome J, Wells A.

Stem Cell Res Ther. 2017 Sep 5;8(1):193. doi: 10.1186/s13287-017-0644-9.


TNF-α promotes nuclear enrichment of the transcription factor TonEBP/NFAT5 to selectively control inflammatory but not osmoregulatory responses in nucleus pulposus cells.

Johnson ZI, Doolittle AC, Snuggs JW, Shapiro IM, Le Maitre CL, Risbud MV.

J Biol Chem. 2017 Oct 20;292(42):17561-17575. doi: 10.1074/jbc.M117.790378. Epub 2017 Aug 25.


Seasonal influence of scallop culture on nutrient flux, bacterial pathogens and bacterioplankton diversity across estuaries off the Bohai Sea Coast of Northern China.

He Y, Sen B, Shang J, He Y, Xie N, Zhang Y, Zhang J, Johnson ZI, Wang G.

Mar Pollut Bull. 2017 Nov 15;124(1):411-420. doi: 10.1016/j.marpolbul.2017.07.062. Epub 2017 Aug 2.


Lack of evidence for involvement of TonEBP and hyperosmotic stimulus in induction of autophagy in the nucleus pulposus.

Liu C, Choi H, Johnson ZI, Tian J, Shapiro IM, Risbud MV.

Sci Rep. 2017 Jul 3;7(1):4543. doi: 10.1038/s41598-017-04876-2.


Abundance and molecular diversity of thraustochytrids in coastal waters of southern China.

Liu Y, Singh P, Liang Y, Li J, Xie N, Song Z, Daroch M, Leng K, Johnson ZI, Wang G.

FEMS Microbiol Ecol. 2017 Jun 1;93(6). doi: 10.1093/femsec/fix070.


Annual community patterns are driven by seasonal switching between closely related marine bacteria.

Ward CS, Yung CM, Davis KM, Blinebry SK, Williams TC, Johnson ZI, Hunt DE.

ISME J. 2017 Jun;11(6):1412-1422. doi: 10.1038/ismej.2017.4. Epub 2017 Feb 24. Erratum in: ISME J. 2017 Nov;11(11):2637.


Insensitivity of Diverse and Temporally Variable Particle-Associated Microbial Communities to Bulk Seawater Environmental Parameters.

Yung CM, Ward CS, Davis KM, Johnson ZI, Hunt DE.

Appl Environ Microbiol. 2016 May 16;82(11):3431-3437. doi: 10.1128/AEM.00395-16. Print 2016 Jun 1.


Niche partitioning and biogeography of high light adapted Prochlorococcus across taxonomic ranks in the North Pacific.

Larkin AA, Blinebry SK, Howes C, Lin Y, Loftus SE, Schmaus CA, Zinser ER, Johnson ZI.

ISME J. 2016 Jul;10(7):1555-67. doi: 10.1038/ismej.2015.244. Epub 2016 Jan 22.


Variable but persistent coexistence of Prochlorococcus ecotypes along temperature gradients in the ocean's surface mixed layer.

Chandler JW, Lin Y, Gainer PJ, Post AF, Johnson ZI, Zinser ER.

Environ Microbiol Rep. 2016 Apr;8(2):272-84. doi: 10.1111/1758-2229.12378. Epub 2016 Jan 28.


Disc in flames: Roles of TNF-α and IL-1β in intervertebral disc degeneration.

Johnson ZI, Schoepflin ZR, Choi H, Shapiro IM, Risbud MV.

Eur Cell Mater. 2015 Sep 21;30:104-16; discussion 116-7. Review.


Light-driven synchrony of Prochlorococcus growth and mortality in the subtropical Pacific gyre.

Ribalet F, Swalwell J, Clayton S, Jiménez V, Sudek S, Lin Y, Johnson ZI, Worden AZ, Armbrust EV.

Proc Natl Acad Sci U S A. 2015 Jun 30;112(26):8008-12. doi: 10.1073/pnas.1424279112. Epub 2015 Jun 15.


Aquaporin 1 and 5 expression decreases during human intervertebral disc degeneration: Novel HIF-1-mediated regulation of aquaporins in NP cells.

Johnson ZI, Gogate SS, Day R, Binch A, Markova DZ, Chiverton N, Cole A, Conner M, Shapiro IM, Le Maitre CL, Risbud MV.

Oncotarget. 2015 May 20;6(14):11945-58.


Thermally adaptive tradeoffs in closely related marine bacterial strains.

Yung CM, Vereen MK, Herbert A, Davis KM, Yang J, Kantorowska A, Ward CS, Wernegreen JJ, Johnson ZI, Hunt DE.

Environ Microbiol. 2015 Jul;17(7):2421-9. doi: 10.1111/1462-2920.12714. Epub 2015 Jan 27.


Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities.

Dupont CL, McCrow JP, Valas R, Moustafa A, Walworth N, Goodenough U, Roth R, Hogle SL, Bai J, Johnson ZI, Mann E, Palenik B, Barbeau KA, Venter JC, Allen AE.

ISME J. 2015 May;9(5):1076-92. doi: 10.1038/ismej.2014.198. Epub 2014 Oct 21.


Techniques for quantifying phytoplankton biodiversity.

Johnson ZI, Martiny AC.

Ann Rev Mar Sci. 2015;7:299-324. doi: 10.1146/annurev-marine-010814-015902. Epub 2014 Sep 17. Review.


Extracellular osmolarity regulates matrix homeostasis in the intervertebral disc and articular cartilage: evolving role of TonEBP.

Johnson ZI, Shapiro IM, Risbud MV.

Matrix Biol. 2014 Nov;40:10-6. doi: 10.1016/j.matbio.2014.08.014. Epub 2014 Aug 27. Review.


Distribution and diversity of planktonic fungi in the West Pacific Warm Pool.

Wang X, Singh P, Gao Z, Zhang X, Johnson ZI, Wang G.

PLoS One. 2014 Jul 3;9(7):e101523. doi: 10.1371/journal.pone.0101523. eCollection 2014.


FIH-1-Mint3 axis does not control HIF-1 transcriptional activity in nucleus pulposus cells.

Hirose Y, Johnson ZI, Schoepflin ZR, Markova DZ, Chiba K, Toyama Y, Shapiro IM, Risbud MV.

J Biol Chem. 2014 Jul 25;289(30):20594-605.


Dramatic variability of the carbonate system at a temperate coastal ocean site (Beaufort, North Carolina, USA) is regulated by physical and biogeochemical processes on multiple timescales.

Johnson ZI, Wheeler BJ, Blinebry SK, Carlson CM, Ward CS, Hunt DE.

PLoS One. 2013 Dec 17;8(12):e85117. doi: 10.1371/journal.pone.0085117. eCollection 2013.


Carbon allocation under light and nitrogen resource gradients in two model marine phytoplankton(1).

Bittar TB, Lin Y, Sassano LR, Wheeler BJ, Brown SL, Cochlan WP, Johnson ZI.

J Phycol. 2013 Jun;49(3):523-35. doi: 10.1111/jpy.12060. Epub 2013 Mar 28.


In situ activity of a dominant Prochlorococcus ecotype (eHL-II) from rRNA content and cell size.

Lin Y, Gazsi K, Lance VP, Larkin AA, Chandler JW, Zinser ER, Johnson ZI.

Environ Microbiol. 2013 Oct;15(10):2736-47. doi: 10.1111/1462-2920.12135. Epub 2013 May 13.


Relationship between abundance and specific activity of bacterioplankton in open ocean surface waters.

Hunt DE, Lin Y, Church MJ, Karl DM, Tringe SG, Izzo LK, Johnson ZI.

Appl Environ Microbiol. 2013 Jan;79(1):177-84. doi: 10.1128/AEM.02155-12. Epub 2012 Oct 19.


Air-water fluxes of N₂O and CH₄ during microalgae (Staurosira sp.) cultivation in an open raceway pond.

Ferrón S, Ho DT, Johnson ZI, Huntley ME.

Environ Sci Technol. 2012 Oct 2;46(19):10842-8. doi: 10.1021/es302396j. Epub 2012 Sep 11.


Abundance and genetic diversity of aerobic anoxygenic phototrophic bacteria of coastal regions of the pacific ocean.

Ritchie AE, Johnson ZI.

Appl Environ Microbiol. 2012 Apr;78(8):2858-66. doi: 10.1128/AEM.06268-11. Epub 2012 Feb 3.


Viral and bacterial abundance and production in the Western Pacific Ocean and the relation to other oceanic realms.

Rowe JM, DeBruyn JM, Poorvin L, LeCleir GR, Johnson ZI, Zinser ER, Wilhelm SW.

FEMS Microbiol Ecol. 2012 Feb;79(2):359-70. doi: 10.1111/j.1574-6941.2011.01223.x. Epub 2011 Nov 1.


Dependence of the cyanobacterium Prochlorococcus on hydrogen peroxide scavenging microbes for growth at the ocean's surface.

Morris JJ, Johnson ZI, Szul MJ, Keller M, Zinser ER.

PLoS One. 2011 Feb 3;6(2):e16805. doi: 10.1371/journal.pone.0016805.


A suite of microplate reader-based colorimetric methods to quantify ammonium, nitrate, orthophosphate and silicate concentrations for aquatic nutrient monitoring.

Ringuet S, Sassano L, Johnson ZI.

J Environ Monit. 2011 Feb;13(2):370-6. doi: 10.1039/c0em00290a. Epub 2010 Dec 6.


Molecular characterization of the spatial diversity and novel lineages of mycoplankton in Hawaiian coastal waters.

Gao Z, Johnson ZI, Wang G.

ISME J. 2010 Jan;4(1):111-20. doi: 10.1038/ismej.2009.87. Epub 2009 Jul 30.


Prochlorococcus: approved for export.

Johnson ZI, Lin Y.

Proc Natl Acad Sci U S A. 2009 Jun 30;106(26):10400-1. doi: 10.1073/pnas.0905187106. Epub 2009 Jun 24. No abstract available.


Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, prochlorococcus.

Zinser ER, Lindell D, Johnson ZI, Futschik ME, Steglich C, Coleman ML, Wright MA, Rector T, Steen R, McNulty N, Thompson LR, Chisholm SW.

PLoS One. 2009;4(4):e5135. doi: 10.1371/journal.pone.0005135. Epub 2009 Apr 8.


Facilitation of robust growth of Prochlorococcus colonies and dilute liquid cultures by "helper" heterotrophic bacteria.

Morris JJ, Kirkegaard R, Szul MJ, Johnson ZI, Zinser ER.

Appl Environ Microbiol. 2008 Jul;74(14):4530-4. doi: 10.1128/AEM.02479-07. Epub 2008 May 23.


Photosynthetic maximum quantum yield increases are an essential component of the Southern Ocean phytoplankton response to iron.

Hiscock MR, Lance VP, Apprill AM, Bidigare RR, Johnson ZI, Mitchell BG, Smith WO Jr, Barber RT.

Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4775-80. doi: 10.1073/pnas.0705006105. Epub 2008 Mar 18.


Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability.

Tolonen AC, Aach J, Lindell D, Johnson ZI, Rector T, Steen R, Church GM, Chisholm SW.

Mol Syst Biol. 2006;2:53. Epub 2006 Oct 3.


Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients.

Johnson ZI, Zinser ER, Coe A, McNulty NP, Woodward EM, Chisholm SW.

Science. 2006 Mar 24;311(5768):1737-40.


Prochlorococcus ecotype abundances in the North Atlantic Ocean as revealed by an improved quantitative PCR method.

Zinser ER, Coe A, Johnson ZI, Martiny AC, Fuller NJ, Scanlan DJ, Chisholm SW.

Appl Environ Microbiol. 2006 Jan;72(1):723-32.


Photosynthesis genes in marine viruses yield proteins during host infection.

Lindell D, Jaffe JD, Johnson ZI, Church GM, Chisholm SW.

Nature. 2005 Nov 3;438(7064):86-9. Epub 2005 Oct 12.


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