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Author Correction: The gut microbiota in infants of obese mothers increases inflammation and susceptibility to NAFLD.

Soderborg TK, Clark SE, Mulligan CE, Janssen RC, Babcock L, Ir D, Young B, Krebs NF, Lemas DJ, Johnson LK, Weir T, Lenz LL, Frank DN, Hernandez TL, Kuhn KA, D'Alessandro A, Barbour LA, El Kasmi KC, Friedman JE.

Nat Commun. 2019 Jul 1;10(1):2965. doi: 10.1038/s41467-019-10943-1.


Single-centre, triple-blinded, randomised, 1-year, parallel-group, superiority study to compare the effects of Roux-en-Y gastric bypass and sleeve gastrectomy on remission of type 2 diabetes and β-cell function in subjects with morbid obesity: a protocol for the Obesity surgery in Tønsberg (Oseberg) study.

Borgeraas H, Hjelmesæth J, Birkeland KI, Fatima F, Grimnes JO, Gulseth HL, Halvorsen E, Hertel JK, Hillestad TOW, Johnson LK, Karlsen TI, Kolotkin RL, Kvan NP, Lindberg M, Lorentzen J, Nordstrand N, Sandbu R, Seeberg KA, Seip B, Svanevik M, Valderhaug TG, Hofsø D.

BMJ Open. 2019 Jun 4;9(6):e024573. doi: 10.1136/bmjopen-2018-024573.


SELfies and CELLfies: Whole Genome Sequencing and Annotation of Five Antibiotic Resistant Bacteria Isolated from the Surfaces of Smartphones, An Inquiry Based Laboratory Exercise in a Genomics Undergraduate Course at the Rochester Institute of Technology.

Parthasarathy A, Wong NH, Weiss AN, Tian S, Ali SE, Cavanaugh NT, Chinsky TM, Cramer CE, Gupta A, Jha R, Johnson LK, Tuason ED, Klafehn LM, Krishnadas V, Musich RJ, Pfaff JM, Richman SC, Shumway AJ, Hudson AO.

J Genomics. 2019 Feb 19;7:26-30. doi: 10.7150/jgen.31911. eCollection 2019.


Targeting DDR2 enhances tumor response to anti-PD-1 immunotherapy.

Tu MM, Lee FYF, Jones RT, Kimball AK, Saravia E, Graziano RF, Coleman B, Menard K, Yan J, Michaud E, Chang H, Abdel-Hafiz HA, Rozhok AI, Duex JE, Agarwal N, Chauca-Diaz A, Johnson LK, Ng TL, Cambier JC, Clambey ET, Costello JC, Korman AJ, Theodorescu D.

Sci Adv. 2019 Feb 20;5(2):eaav2437. doi: 10.1126/sciadv.aav2437. eCollection 2019 Feb.


Similarities in Functional Play and Differences in Symbolic Play of Children With Autism Spectrum Disorder.

Thiemann-Bourque K, Johnson LK, Brady NC.

Am J Intellect Dev Disabil. 2019 Jan;124(1):77-91. doi: 10.1352/1944-7558-124.1.77.


Impacts of increased ocean temperatures on a low-latitude coral reef fish - Processes related to oxygen uptake and delivery.

Rodgers GG, Rummer JL, Johnson LK, McCormick MI.

J Therm Biol. 2019 Jan;79:95-102. doi: 10.1016/j.jtherbio.2018.12.008. Epub 2018 Dec 10.


Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes.

Johnson LK, Alexander H, Brown CT.

Gigascience. 2019 Apr 1;8(4). pii: giy158. doi: 10.1093/gigascience/giy158.


Keeping it light: (re)analyzing community-wide datasets without major infrastructure.

Alexander H, Johnson LK, Brown CT.

Gigascience. 2019 Feb 1;8(2). doi: 10.1093/gigascience/giy159.


The gut microbiota in infants of obese mothers increases inflammation and susceptibility to NAFLD.

Soderborg TK, Clark SE, Mulligan CE, Janssen RC, Babcock L, Ir D, Young B, Krebs N, Lemas DJ, Johnson LK, Weir T, Lenz LL, Frank DN, Hernandez TL, Kuhn KA, D'Alessandro A, Barbour LA, El Kasmi KC, Friedman JE.

Nat Commun. 2018 Oct 26;9(1):4462. doi: 10.1038/s41467-018-06929-0. Erratum in: Nat Commun. 2019 Jul 1;10(1):2965.


Echinococcus Granulosus Infection in Two Free-Ranging Lumholtz's Tree-Kangaroo (Dendrolagus lumholtzi) from the Atherton Tablelands, Queensland.

Shima AL, Constantinoiu CC, Johnson LK, Skerratt LF.

Trop Med Infect Dis. 2018 May 3;3(2). pii: E47. doi: 10.3390/tropicalmed3020047.


3D Printed lattice microstructures to mimic soft biological materials.

Johnson LK, Richburg C, Lew M, Ledoux WR, Aubin PM, Rombokas E.

Bioinspir Biomim. 2018 Nov 2;14(1):016001. doi: 10.1088/1748-3190/aae10a.


Recognition of Federal Dietary Guidance Icons Is Associated with Greater Diet Quality.

Jahns L, Conrad Z, Johnson LK, Raatz SK, Kranz S.

J Acad Nutr Diet. 2018 Nov;118(11):2120-2127. doi: 10.1016/j.jand.2018.05.026. Epub 2018 Aug 23.


Capacity of the US Food System to Accommodate Improved Diet Quality: A Biophysical Model Projecting to 2030.

Conrad Z, Johnson LK, Peters CJ, Jahns L.

Curr Dev Nutr. 2018 Jan 29;2(4):nzy007. doi: 10.1093/cdn/nzy007. eCollection 2018 Apr.


TRP63/TP63 loss accelerates skin tumorigenesis through activation of Wnt/β-catenin signaling.

Lakshmanachetty S, Balaiya V, Johnson LK, Koster MI.

J Dermatol Sci. 2018 Sep;91(3):325-328. doi: 10.1016/j.jdermsci.2018.05.011. Epub 2018 Jun 1. No abstract available.


Impact of body weight, low energy diet and gastric bypass on drug bioavailability, cardiovascular risk factors and metabolic biomarkers: protocol for an open, non-randomised, three-armed single centre study (COCKTAIL).

Hjelmesæth J, Åsberg A, Andersson S, Sandbu R, Robertsen I, Johnson LK, Angeles PC, Hertel JK, Skovlund E, Heijer M, Ek AL, Krogstad V, Karlsen TI, Christensen H, Andersson TB, Karlsson C.

BMJ Open. 2018 May 29;8(5):e021878. doi: 10.1136/bmjopen-2018-021878.


Nutrient intake disparities in the US: modeling the effect of food substitutions.

Conrad Z, Johnson LK, Roemmich JN, Juan W, Jahns L.

Nutr J. 2018 May 17;17(1):53. doi: 10.1186/s12937-018-0360-z.


A diet high in carotenoid-rich vegetables and fruits favorably impacts inflammation status by increasing plasma concentrations of IFN-α2 and decreasing MIP-1β and TNF-α in healthy individuals during a controlled feeding trial.

Jahns L, Conrad Z, Johnson LK, Whigham LD, Wu D, Claycombe-Larson KJ.

Nutr Res. 2018 Apr;52:98-104. doi: 10.1016/j.nutres.2018.02.005. Epub 2018 Feb 13.


Pyrroloquinoline quinone prevents developmental programming of microbial dysbiosis and macrophage polarization to attenuate liver fibrosis in offspring of obese mice.

Friedman JE, Dobrinskikh E, Alfonso-Garcia A, Fast A, Janssen RC, Soderborg TK, Anderson AL, Reisz JA, D'Alessandro A, Frank DN, Robertson CE, de la Houssaye BA, Johnson LK, Orlicky DJ, Wang XX, Levi M, Potma EO, El Kasmi KC, Jonscher KR.

Hepatol Commun. 2018 Jan 22;2(3):313-328. doi: 10.1002/hep4.1139. eCollection 2018 Mar.


Mineral content of eggs differs with hen strain, age, and rearing environment.

Heflin LE, Malheiros R, Anderson KE, Johnson LK, Raatz SK.

Poult Sci. 2018 May 1;97(5):1605-1613. doi: 10.3382/ps/pey025.


Gender-related differences in cardiometabolic risk factors and lifestyle behaviors in treatment-seeking adolescents with severe obesity.

Barstad LH, Júlíusson PB, Johnson LK, Hertel JK, Lekhal S, Hjelmesæth J.

BMC Pediatr. 2018 Feb 14;18(1):61. doi: 10.1186/s12887-018-1057-3.


Treatment with methylnaltrexone is associated with increased survival in patients with advanced cancer.

Janku F, Johnson LK, Karp DD, Atkins JT, Singleton PA, Moss J.

Ann Oncol. 2018 Apr 1;29(4):1076. doi: 10.1093/annonc/mdx776. No abstract available.


Metastatic Squamous Cell Carcinoma in a Northern Brown Bandicoot (Isoodon macrourus).

Beck AP, Shima AL, Bennett MD, Johnson LK.

Vet Sci. 2017 Feb 14;4(1). pii: E10. doi: 10.3390/vetsci4010010.


Effects of probiotics on body weight, body mass index, fat mass and fat percentage in subjects with overweight or obesity: a systematic review and meta-analysis of randomized controlled trials.

Borgeraas H, Johnson LK, Skattebu J, Hertel JK, Hjelmesaeth J.

Obes Rev. 2018 Feb;19(2):219-232. doi: 10.1111/obr.12626. Epub 2017 Oct 18.


Smokers report lower intake of key nutrients than nonsmokers, yet both fall short of meeting recommended intakes.

Raatz SK, Jahns L, Johnson LK, Scheett A, Carriquiry A, Lemieux A, Nakajima M, al'Absi M.

Nutr Res. 2017 Sep;45:30-37. doi: 10.1016/j.nutres.2017.07.010. Epub 2017 Jul 28.


Bridging the Gap between Reproducibility and Translation: Data Resources and Approaches.

Zeiss CJ, Johnson LK.

ILAR J. 2017 Jul 1;58(1):1-3. doi: 10.1093/ilar/ilx017. Review.


Relationship of the Reported Intakes of Fat and Fatty Acids to Body Weight in US Adults.

Raatz SK, Conrad Z, Johnson LK, Picklo MJ, Jahns L.

Nutrients. 2017 Apr 28;9(5). pii: E438. doi: 10.3390/nu9050438.


Time Trends and Patterns of Reported Egg Consumption in the U.S. by Sociodemographic Characteristics.

Conrad Z, Johnson LK, Roemmich JN, Juan W, Jahns L.

Nutrients. 2017 Mar 28;9(4). pii: E333. doi: 10.3390/nu9040333.


Diet Quality Is Lower and Energy Intake Is Higher on Weekends Compared with Weekdays in Midlife Women: A 1-Year Cohort Study.

Jahns L, Conrad Z, Johnson LK, Scheett AJ, Stote KS, Raatz SK.

J Acad Nutr Diet. 2017 Jul;117(7):1080-1086.e1. doi: 10.1016/j.jand.2017.01.012. Epub 2017 Feb 28.


Whole Grains Contribute Only a Small Proportion of Dietary Fiber to the U.S. Diet.

Kranz S, Dodd KW, Juan WY, Johnson LK, Jahns L.

Nutrients. 2017 Feb 17;9(2). pii: E153. doi: 10.3390/nu9020153.


Butyrate Inhibits Cancerous HCT116 Colon Cell Proliferation but to a Lesser Extent in Noncancerous NCM460 Colon Cells.

Zeng H, Taussig DP, Cheng WH, Johnson LK, Hakkak R.

Nutrients. 2017 Jan 1;9(1). pii: E25. doi: 10.3390/nu9010025.


Treatment with methylnaltrexone is associated with increased survival in patients with advanced cancer.

Janku F, Johnson LK, Karp DD, Atkins JT, Singleton PA, Moss J.

Ann Oncol. 2016 Nov;27(11):2032-2038. Epub 2016 Aug 29. Erratum in: Ann Oncol. 2018 Apr 1;29(4):1076.


Twice weekly intake of farmed Atlantic salmon (Salmo salar) positively influences lipoprotein concentration and particle size in overweight men and women.

Raatz SK, Johnson LK, Rosenberger TA, Picklo MJ.

Nutr Res. 2016 Sep;36(9):899-906. doi: 10.1016/j.nutres.2016.06.011. Epub 2016 Jun 27.


Measures of Diet Quality across Calendar and Winter Holiday Seasons among Midlife Women: A 1-Year Longitudinal Study Using the Automated Self-Administered 24-Hour Recall.

Jahns L, Johnson LK, Scheett AJ, Stote KS, Raatz SK, Subar AF, Tande D.

J Acad Nutr Diet. 2016 Dec;116(12):1961-1969. doi: 10.1016/j.jand.2016.07.013. Epub 2016 Sep 9.


Resistant starch analysis of commonly consumed potatoes: Content varies by cooking method and service temperature but not by variety.

Raatz SK, Idso L, Johnson LK, Jackson MI, Combs GF Jr.

Food Chem. 2016 Oct 1;208:297-300. doi: 10.1016/j.foodchem.2016.03.120. Epub 2016 Apr 1.


Enhanced Bioavailability of EPA From Emulsified Fish Oil Preparations Versus Capsular Triacylglycerol.

Raatz SK, Johnson LK, Bukowski MR.

Lipids. 2016 May;51(5):643-51. doi: 10.1007/s11745-015-4100-2. Epub 2015 Dec 21.


Diet Quality of Items Advertised in Supermarket Sales Circulars Compared to Diets of the US Population, as Assessed by the Healthy Eating Index-2010.

Jahns L, Scheett AJ, Johnson LK, Krebs-Smith SM, Payne CR, Whigham LD, Hoverson BS, Kranz S.

J Acad Nutr Diet. 2016 Jan;116(1):115-22.e1. doi: 10.1016/j.jand.2015.09.016. Epub 2015 Oct 23. Erratum in: J Acad Nutr Diet. J Acad Nutr Diet. 2016 Jan;116(1):170.


Consumption of Honey, Sucrose, and High-Fructose Corn Syrup Produces Similar Metabolic Effects in Glucose-Tolerant and -Intolerant Individuals.

Raatz SK, Johnson LK, Picklo MJ.

J Nutr. 2015 Oct;145(10):2265-72. doi: 10.3945/jn.115.218016. Epub 2015 Sep 2.


Fructose content of low calorie diets: effect on cardiometabolic risk factors in obese women with polycystic ovarian syndrome: a randomized controlled trial.

Johnson LK, Holven KB, Nordstrand N, Mellembakken JR, Tanbo T, Hjelmesæth J.

Endocr Connect. 2015 Sep;4(3):144-54. doi: 10.1530/EC-15-0047.


Nutritional adequacy of dietary intake in women with anorexia nervosa.

Raatz SK, Jahns L, Johnson LK, Crosby R, Mitchell JE, Crow S, Peterson C, Le Grange D, Wonderlich SA.

Nutrients. 2015 May 15;7(5):3652-65. doi: 10.3390/nu7053652.


Soy protein is beneficial but high-fat diet and voluntary running are detrimental to bone structure in mice.

Yan L, Graef GL, Nielsen FH, Johnson LK, Cao J.

Nutr Res. 2015 Jun;35(6):523-31. doi: 10.1016/j.nutres.2015.04.012. Epub 2015 Apr 18.


Validity of electronic diet recording nutrient estimates compared to dietitian analysis of diet records: randomized controlled trial.

Raatz SK, Scheett AJ, Johnson LK, Jahns L.

J Med Internet Res. 2015 Jan 20;17(1):e21. doi: 10.2196/jmir.3744.


Intake of seafood in the US varies by age, income, and education level but not by race-ethnicity.

Jahns L, Raatz SK, Johnson LK, Kranz S, Silverstein JT, Picklo MJ.

Nutrients. 2014 Dec 22;6(12):6060-75. doi: 10.3390/nu6126060.


Histopathology associated with haptor attachment of the ectoparasitic monogenean Neobenedenia sp. (Capsalidae) to barramundi, Lates calcarifer (Bloch).

Trujillo-González A, Johnson LK, Constantinoiu CC, Hutson KS.

J Fish Dis. 2015 Dec;38(12):1063-7. doi: 10.1111/jfd.12320. Epub 2014 Oct 17. No abstract available.


Foods advertised in US weekly supermarket sales circulars over one year: a content analysis.

Jahns L, Payne CR, Whigham LD, Johnson LK, Scheett AJ, Hoverson BS, Kranz S.

Nutr J. 2014 Sep 23;13:95. doi: 10.1186/1475-2891-13-95.


Skin and plasma carotenoid response to a provided intervention diet high in vegetables and fruit: uptake and depletion kinetics.

Jahns L, Johnson LK, Mayne ST, Cartmel B, Picklo MJ Sr, Ermakov IV, Gellermann W, Whigham LD.

Am J Clin Nutr. 2014 Sep;100(3):930-7. doi: 10.3945/ajcn.114.086900. Epub 2014 Jul 9.


Endogenous antibodies for tumor detection.

Rich BS, Honeyman JN, Darcy DG, Smith PT, Williams AR, Lim II, Johnson LK, Gönen M, Simon JS, LaQuaglia MP, Simon SM.

Sci Rep. 2014 May 30;4:5088. doi: 10.1038/srep05088.


Metabolic Evidence of Diminished Lipid Oxidation in Women With Polycystic Ovary Syndrome.

Whigham LD, Butz DE, Dashti H, Tonelli M, Johnson LK, Cook ME, Porter WP, Eghbalnia HR, Markley JL, Lindheim SR, Schoeller DA, Abbott DH, Assadi-Porter FM.

Curr Metabolomics. 2014;2(4):269-278.


Breath carbon stable isotope ratios identify changes in energy balance and substrate utilization in humans.

Whigham LD, Butz DE, Johnson LK, Schoeller DA, Abbott DH, Porter WP, Cook ME.

Int J Obes (Lond). 2014 Sep;38(9):1248-50. doi: 10.1038/ijo.2014.7. Epub 2014 Jan 20.


Transformation by Hras(G12V) is consistently associated with mutant allele copy gains and is reversed by farnesyl transferase inhibition.

Chen X, Makarewicz JM, Knauf JA, Johnson LK, Fagin JA.

Oncogene. 2014 Nov 20;33(47):5442-9. doi: 10.1038/onc.2013.489. Epub 2013 Nov 18.

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