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Items: 1 to 50 of 1194

1.

Antimicrobial decision-making and Stewardship.

Johnson JR.

Clin Infect Dis. 2019 Oct 9. pii: ciz992. doi: 10.1093/cid/ciz992. [Epub ahead of print] No abstract available.

PMID:
31598639
2.

Analysis of urine-specific antibiograms from veterans to guide empiric therapy for suspected urinary tract infection.

Marsh KJ, Mundy L, Holter JJ, Johnson JR.

Diagn Microbiol Infect Dis. 2019 Jul 30:114874. doi: 10.1016/j.diagmicrobio.2019.114874. [Epub ahead of print]

PMID:
31575439
3.

Enterovirus pathogenesis requires the host methyltransferase SETD3.

Diep J, Ooi YS, Wilkinson AW, Peters CE, Foy E, Johnson JR, Zengel J, Ding S, Weng KF, Laufman O, Jang G, Xu J, Young T, Verschueren E, Kobluk KJ, Elias JE, Sarnow P, Greenberg HB, Hüttenhain R, Nagamine CM, Andino R, Krogan NJ, Gozani O, Carette JE.

Nat Microbiol. 2019 Sep 16. doi: 10.1038/s41564-019-0551-1. [Epub ahead of print]

PMID:
31527793
4.

Prevalence of asymptomatic bacteriuria among kidney transplant recipients beyond two months post-transplant: A multicenter, prospective, cross-sectional study.

Coussement J, Scemla A, Hougardy JM, Sberro-Soussan R, Amrouche L, Catalano C, Johnson JR, Abramowicz D.

PLoS One. 2019 Sep 6;14(9):e0221820. doi: 10.1371/journal.pone.0221820. eCollection 2019.

5.

Synthetic Essentiality of Metabolic Regulator PDHK1 in PTEN-Deficient Cells and Cancers.

Chatterjee N, Pazarentzos E, Mayekar MK, Gui P, Allegakoen DV, Hrustanovic G, Olivas V, Lin L, Verschueren E, Johnson JR, Hofree M, Yan JJ, Newton BW, Dollen JV, Earnshaw CH, Flanagan J, Chan E, Asthana S, Ideker T, Wu W, Suzuki J, Barad BA, Kirichok Y, Fraser JS, Weiss WA, Krogan NJ, Tulpule A, Sabnis AJ, Bivona TG.

Cell Rep. 2019 Aug 27;28(9):2317-2330.e8. doi: 10.1016/j.celrep.2019.07.063.

6.

Inactivation of extraintestinal pathogenic E. coli clinical and food isolates suspended in ground chicken meat by gamma radiation.

Xu A, Scullen OJ, Sheen S, Johnson JR, Sommers CH.

Food Microbiol. 2019 Dec;84:103264. doi: 10.1016/j.fm.2019.103264. Epub 2019 Jul 12.

7.

PEAK3/C19orf35 pseudokinase, a new NFK3 kinase family member, inhibits CrkII through dimerization.

Lopez ML, Lo M, Kung JE, Dudkiewicz M, Jang GM, Von Dollen J, Johnson JR, Krogan NJ, Pawłowski K, Jura N.

Proc Natl Acad Sci U S A. 2019 Jul 30;116(31):15495-15504. doi: 10.1073/pnas.1906360116. Epub 2019 Jul 16.

PMID:
31311869
8.

Author Correction: Building a global alliance of biofoundries.

Hillson N, Caddick M, Cai Y, Carrasco JA, Chang MW, Curach NC, Bell DJ, Feuvre RL, Friedman DC, Fu X, Gold ND, Herrgård MJ, Holowko MB, Johnson JR, Johnson RA, Keasling JD, Kitney RI, Kondo A, Liu C, Martin VJJ, Menolascina F, Ogino C, Patron NJ, Pavan M, Poh CL, Pretorius IS, Rosser SJ, Scrutton NS, Storch M, Tekotte H, Travnik E, Vickers CE, Yew WS, Yuan Y, Zhao H, Freemont PS.

Nat Commun. 2019 Jul 11;10(1):3132. doi: 10.1038/s41467-019-10862-1.

9.

ARIH2 Is a Vif-Dependent Regulator of CUL5-Mediated APOBEC3G Degradation in HIV Infection.

Hüttenhain R, Xu J, Burton LA, Gordon DE, Hultquist JF, Johnson JR, Satkamp L, Hiatt J, Rhee DY, Baek K, Crosby DC, Frankel AD, Marson A, Harper JW, Alpi AF, Schulman BA, Gross JD, Krogan NJ.

Cell Host Microbe. 2019 Jul 10;26(1):86-99.e7. doi: 10.1016/j.chom.2019.05.008. Epub 2019 Jun 25.

PMID:
31253590
10.

Two Accessory Proteins Govern MmpL3 Mycolic Acid Transport in Mycobacteria.

Fay A, Czudnochowski N, Rock JM, Johnson JR, Krogan NJ, Rosenberg O, Glickman MS.

MBio. 2019 Jun 25;10(3). pii: e00850-19. doi: 10.1128/mBio.00850-19.

11.

Heart failure drug proscillaridin A targets MYC overexpressing leukemia through global loss of lysine acetylation.

Da Costa EM, Armaos G, McInnes G, Beaudry A, Moquin-Beaudry G, Bertrand-Lehouillier V, Caron M, Richer C, St-Onge P, Johnson JR, Krogan N, Sai Y, Downey M, Rafei M, Boileau M, Eppert K, Flores-Díaz E, Haman A, Hoang T, Sinnett D, Beauséjour C, McGraw S, Raynal NJ.

J Exp Clin Cancer Res. 2019 Jun 13;38(1):251. doi: 10.1186/s13046-019-1242-8.

12.

Associations between residual feed intake and apparent nutrient digestibility, in vitro methane-producing activity, and volatile fatty acid concentrations in growing beef cattle1.

Johnson JR, Carstens GE, Krueger WK, Lancaster PA, Brown EG, Tedeschi LO, Anderson RC, Johnson KA, Brosh A.

J Anim Sci. 2019 Jul 30;97(8):3550-3561. doi: 10.1093/jas/skz195.

PMID:
31175808
13.

Pericytes in Chronic Lung Disease.

Shammout B, Johnson JR.

Adv Exp Med Biol. 2019;1147:299-317. doi: 10.1007/978-3-030-16908-4_14.

PMID:
31147884
14.

Chaperone-mediated reflux of secretory proteins to the cytosol during endoplasmic reticulum stress.

Igbaria A, Merksamer PI, Trusina A, Tilahun F, Johnson JR, Brandman O, Krogan NJ, Weissman JS, Papa FR.

Proc Natl Acad Sci U S A. 2019 Jun 4;116(23):11291-11298. doi: 10.1073/pnas.1904516116. Epub 2019 May 17.

PMID:
31101715
15.

Building a global alliance of biofoundries.

Hillson N, Caddick M, Cai Y, Carrasco JA, Chang MW, Curach NC, Bell DJ, Le Feuvre R, Friedman DC, Fu X, Gold ND, Herrgård MJ, Holowko MB, Johnson JR, Johnson RA, Keasling JD, Kitney RI, Kondo A, Liu C, Martin VJJ, Menolascina F, Ogino C, Patron NJ, Pavan M, Poh CL, Pretorius IS, Rosser SJ, Scrutton NS, Storch M, Tekotte H, Travnik E, Vickers CE, Yew WS, Yuan Y, Zhao H, Freemont PS.

Nat Commun. 2019 May 9;10(1):2040. doi: 10.1038/s41467-019-10079-2. No abstract available. Erratum in: Nat Commun. 2019 Jul 11;10(1):3132.

16.

Crosstalk between RNA Pol II C-Terminal Domain Acetylation and Phosphorylation via RPRD Proteins.

Ali I, Ruiz DG, Ni Z, Johnson JR, Zhang H, Li PC, Khalid MM, Conrad RJ, Guo X, Min J, Greenblatt J, Jacobson M, Krogan NJ, Ott M.

Mol Cell. 2019 Jun 20;74(6):1164-1174.e4. doi: 10.1016/j.molcel.2019.04.008. Epub 2019 May 1.

PMID:
31054975
17.

Microarray and pathway analysis of two COMMA-Dβ derived clones reveal important differences relevant to their developmental capacity in-vivo.

Johnson JR, Boulanger CA, Hudson T, Savage E, Smith GH.

Oncotarget. 2019 Mar 15;10(22):2118-2135. doi: 10.18632/oncotarget.26655. eCollection 2019 Mar 15.

18.

Despite Predominance of Uropathogenic/Extraintestinal Pathotypes Among Travel-acquired Extended-spectrum β-Lactamase-producing Escherichia coli, the Most Commonly Associated Clinical Manifestation Is Travelers' Diarrhea.

Kantele A, Lääveri T, Mero S, Häkkinen IMK, Kirveskari J, Johnston BD, Johnson JR.

Clin Infect Dis. 2019 Apr 29. pii: ciz182. doi: 10.1093/cid/ciz182. [Epub ahead of print]

PMID:
31034006
19.

Chronic kidney disease in patients infected with human immunodeficiency virus (HIV) in an urban cohort.

Brito RM, Nguyen DT, Johnson JR, Lai EJ, Castro RE, Albert AM, Barnes AS, Graviss EA, Suki WN.

PLoS One. 2019 Apr 17;14(4):e0215575. doi: 10.1371/journal.pone.0215575. eCollection 2019.

20.

Predictive characteristics of methicillin-resistant Staphylococcus aureus nares screening tests for methicillin resistance among S. aureus clinical isolates from hospitalized veterans.

Fox TC, Thuras P, Johnson JR.

Infect Control Hosp Epidemiol. 2019 May;40(5):603-605. doi: 10.1017/ice.2019.32. Epub 2019 Apr 15.

PMID:
30982474
21.

Survey of US wastewater for carbapenem-resistant Enterobacteriaceae.

Hoelle J, Johnson JR, Johnston BD, Kinkle B, Boczek L, Ryu H, Hayes S.

J Water Health. 2019 Apr;17(2):219-226. doi: 10.2166/wh.2019.165.

PMID:
30942772
22.

Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function.

Orr AL, Kim C, Jimenez-Morales D, Newton BW, Johnson JR, Krogan NJ, Swaney DL, Mahley RW.

J Alzheimers Dis. 2019;68(3):991-1011. doi: 10.3233/JAD-181184.

23.

Identification of antiviral roles for the exon-junction complex and nonsense-mediated decay in flaviviral infection.

Li M, Johnson JR, Truong B, Kim G, Weinbren N, Dittmar M, Shah PS, Von Dollen J, Newton BW, Jang GM, Krogan NJ, Cherry S, Ramage H.

Nat Microbiol. 2019 Jun;4(6):985-995. doi: 10.1038/s41564-019-0375-z. Epub 2019 Mar 4.

24.

Dynamic BAF chromatin remodeling complex subunit inclusion promotes temporally distinct gene expression programs in cardiogenesis.

Hota SK, Johnson JR, Verschueren E, Thomas R, Blotnick AM, Zhu Y, Sun X, Pennacchio LA, Krogan NJ, Bruneau BG.

Development. 2019 Jul 5;146(19). pii: dev174086. doi: 10.1242/dev.174086.

25.

The Applicability of Mouse Models to the Study of Human Disease.

Rydell-Törmänen K, Johnson JR.

Methods Mol Biol. 2019;1940:3-22. doi: 10.1007/978-1-4939-9086-3_1.

PMID:
30788814
26.

Rapid Emergence, Subsidence, and Molecular Detection of Escherichia coli Sequence Type 1193-fimH64, a New Disseminated Multidrug-Resistant Commensal and Extraintestinal Pathogen.

Johnson JR, Johnston BD, Porter SB, Clabots C, Bender TL, Thuras P, Trott DJ, Cobbold R, Mollinger J, Ferrieri P, Drawz S, Banerjee R.

J Clin Microbiol. 2019 Apr 26;57(5). pii: e01664-18. doi: 10.1128/JCM.01664-18. Print 2019 May.

PMID:
30787145
27.

Overactive Bladder Symptoms After Pelvic Organ Prolapse Repair.

Johnson JR, High RA, Dziadek O, Ocon A, Muir TW, Xu J, Antosh DD.

Female Pelvic Med Reconstr Surg. 2019 Jan 23. doi: 10.1097/SPV.0000000000000700. [Epub ahead of print]

PMID:
30681419
28.

Psychosocial and functional contributors to personal recovery in serious mental illness.

Treichler EBH, Li F, O'Hare M, Evans EA, Johnson JR, Spaulding WD.

J Ment Health. 2019 Aug;28(4):427-435. doi: 10.1080/09638237.2018.1521932. Epub 2019 Jan 19.

PMID:
30661426
29.

Analysis of mutational patterns in quinolone resistance-determining regions of GyrA and ParC of clinical isolates.

Ostrer L, Khodursky RF, Johnson JR, Hiasa H, Khodursky A.

Int J Antimicrob Agents. 2019 Mar;53(3):318-324. doi: 10.1016/j.ijantimicag.2018.12.004. Epub 2018 Dec 21.

PMID:
30582984
30.

Comparative Flavivirus-Host Protein Interaction Mapping Reveals Mechanisms of Dengue and Zika Virus Pathogenesis.

Shah PS, Link N, Jang GM, Sharp PP, Zhu T, Swaney DL, Johnson JR, Von Dollen J, Ramage HR, Satkamp L, Newton B, Hüttenhain R, Petit MJ, Baum T, Everitt A, Laufman O, Tassetto M, Shales M, Stevenson E, Iglesias GN, Shokat L, Tripathi S, Balasubramaniam V, Webb LG, Aguirre S, Willsey AJ, Garcia-Sastre A, Pollard KS, Cherry S, Gamarnik AV, Marazzi I, Taunton J, Fernandez-Sesma A, Bellen HJ, Andino R, Krogan NJ.

Cell. 2018 Dec 13;175(7):1931-1945.e18. doi: 10.1016/j.cell.2018.11.028.

PMID:
30550790
31.

Self-reported risk factors for having Escherichia coli sequence type 131 or its H30 subclone among US Veterans with a clinical E. coli isolate.

Manges AR, Thuras P, Porter S, Johnson JR.

Epidemiol Infect. 2018 Dec 3:1-7. doi: 10.1017/S0950268818003114. [Epub ahead of print]

32.

The Yeast DNA Damage Checkpoint Kinase Rad53 Targets the Exoribonuclease, Xrn1.

Lao JP, Ulrich KM, Johnson JR, Newton BW, Vashisht AA, Wohlschlegel JA, Krogan NJ, Toczyski DP.

G3 (Bethesda). 2018 Dec 10;8(12):3931-3944. doi: 10.1534/g3.118.200767.

33.

Phylogenomic Analysis of Extraintestinal Pathogenic Escherichia coli Sequence Type 1193, an Emerging Multidrug-Resistant Clonal Group.

Johnson TJ, Elnekave E, Miller EA, Munoz-Aguayo J, Flores Figueroa C, Johnston B, Nielson DW, Logue CM, Johnson JR.

Antimicrob Agents Chemother. 2018 Dec 21;63(1). pii: e01913-18. doi: 10.1128/AAC.01913-18. Print 2019 Jan.

34.

Host and microbial factors in kidney transplant recipients with Escherichia coli acute pyelonephritis or asymptomatic bacteriuria: a prospective study using whole-genome sequencing.

Coussement J, Argudín MA, Heinrichs A, Racapé J, de Mendonça R, Nienhaus L, Le Moine A, Roisin S, Dodémont M, Jacobs F, Abramowicz D, Johnston BD, Johnson JR, Denis O.

Nephrol Dial Transplant. 2019 May 1;34(5):878-885. doi: 10.1093/ndt/gfy292.

PMID:
30304506
35.

Give me a SINE: how Selective Inhibitors of Nuclear Export modulate autophagy and aging.

Kumar AV, Thakurta TG, Silvestrini MJ, Johnson JR, Reenan RA, Lapierre LR.

Mol Cell Oncol. 2018 Aug 17;5(5):e1502511. doi: 10.1080/23723556.2018.1502511. eCollection 2018.

36.

Cost-effectiveness of pre-operative Staphylococcus aureus screening and decolonization.

Kline SE, Sanstead EC, Johnson JR, Kulasingam SL.

Infect Control Hosp Epidemiol. 2018 Nov;39(11):1340-1346. doi: 10.1017/ice.2018.228. Epub 2018 Sep 20.

PMID:
30231943
37.

Multiple Routes to Oncogenesis Are Promoted by the Human Papillomavirus-Host Protein Network.

Eckhardt M, Zhang W, Gross AM, Von Dollen J, Johnson JR, Franks-Skiba KE, Swaney DL, Johnson TL, Jang GM, Shah PS, Brand TM, Archambault J, Kreisberg JF, Grandis JR, Ideker T, Krogan NJ.

Cancer Discov. 2018 Nov;8(11):1474-1489. doi: 10.1158/2159-8290.CD-17-1018. Epub 2018 Sep 12.

38.

Triamcinolone acetonide extended-release in patients with osteoarthritis and type 2 diabetes: a randomized, phase 2 study.

Russell SJ, Sala R, Conaghan PG, Habib G, Vo Q, Manning R, Kivitz A, Davis Y, Lufkin J, Johnson JR, Kelley S, Bodick N.

Rheumatology (Oxford). 2018 Dec 1;57(12):2235-2241. doi: 10.1093/rheumatology/key265.

39.

Prevalence and Molecular Characteristics of Clostridium difficile in Retail Meats, Food-Producing and Companion Animals, and Humans in Minnesota.

Shaughnessy MK, Snider T, Sepulveda R, Boxrud D, Cebelinski E, Jawahir S, Holzbauer S, Johnston BD, Smith K, Bender JB, Thuras P, Diez-Gonzalez F, Johnson JR.

J Food Prot. 2018 Oct;81(10):1635-1642. doi: 10.4315/0362-028X.JFP-18-104.

PMID:
30198756
40.

CRL4AMBRA1 targets Elongin C for ubiquitination and degradation to modulate CRL5 signaling.

Chen SH, Jang GM, Hüttenhain R, Gordon DE, Du D, Newton BW, Johnson JR, Hiatt J, Hultquist JF, Johnson TL, Liu YL, Burton LA, Ye J, Reichermeier KM, Stroud RM, Marson A, Debnath J, Gross JD, Krogan NJ.

EMBO J. 2018 Sep 14;37(18). pii: e97508. doi: 10.15252/embj.201797508. Epub 2018 Aug 30.

41.

Escherichia coli ST131-H22 as a Foodborne Uropathogen.

Liu CM, Stegger M, Aziz M, Johnson TJ, Waits K, Nordstrom L, Gauld L, Weaver B, Rolland D, Statham S, Horwinski J, Sariya S, Davis GS, Sokurenko E, Keim P, Johnson JR, Price LB.

MBio. 2018 Aug 28;9(4). pii: e00470-18. doi: 10.1128/mBio.00470-18.

42.

An Mtb-Human Protein-Protein Interaction Map Identifies a Switch between Host Antiviral and Antibacterial Responses.

Penn BH, Netter Z, Johnson JR, Von Dollen J, Jang GM, Johnson T, Ohol YM, Maher C, Bell SL, Geiger K, Golovkine G, Du X, Choi A, Parry T, Mohapatra BC, Storck MD, Band H, Chen C, Jäger S, Shales M, Portnoy DA, Hernandez R, Coscoy L, Cox JS, Krogan NJ.

Mol Cell. 2018 Aug 16;71(4):637-648.e5. doi: 10.1016/j.molcel.2018.07.010.

43.

Accessory Traits and Phylogenetic Background Predict Escherichia coli Extraintestinal Virulence Better Than Does Ecological Source.

Johnson JR, Johnston BD, Porter S, Thuras P, Aziz M, Price LB.

J Infect Dis. 2019 Jan 1;219(1):121-132. doi: 10.1093/infdis/jiy459.

PMID:
30085181
44.

Clinical and Molecular Correlates of Escherichia coli Bloodstream Infection from Two Geographically Diverse Centers in Rochester, Minnesota, and Singapore.

Mendis SM, Vasoo S, Johnston BD, Porter SB, Cunningham SA, Menon SR, Teng CB, De PP, Patel R, Johnson JR, Banerjee R.

Antimicrob Agents Chemother. 2018 Sep 24;62(10). pii: e00937-18. doi: 10.1128/AAC.00937-18. Print 2018 Oct.

45.

The evolution of partial undercutting facetectomy in the treatment of lumbar spinal stenosis.

Cawley DT, Shenoy R, Benton A, Muthian S, Selvadurai S, Johnson JR, Molloy S.

J Spine Surg. 2018 Jun;4(2):451-455. doi: 10.21037/jss.2018.06.06. Review.

46.

Extensive Genetic Commonality among Wildlife, Wastewater, Community, and Nosocomial Isolates of Escherichia coli Sequence Type 131 (H30R1 and H30Rx Subclones) That Carry blaCTX-M-27 or blaCTX-M-15.

Jamborova I, Johnston BD, Papousek I, Kachlikova K, Micenkova L, Clabots C, Skalova A, Chudejova K, Dolejska M, Literak I, Johnson JR.

Antimicrob Agents Chemother. 2018 Sep 24;62(10). pii: e00519-18. doi: 10.1128/AAC.00519-18. Print 2018 Oct.

47.

Randomized controlled trial of a self-administered five-day antiseptic bundle versus usual disinfectant soap showers for preoperative eradication of Staphylococcus aureus colonization.

Kline SE, Neaton JD, Lynfield R, Ferrieri P, Kulasingam S, Dittes K, Glennen A, Jawahir S, Kaizer A, Menk J, Johnson JR.

Infect Control Hosp Epidemiol. 2018 Sep;39(9):1049-1057. doi: 10.1017/ice.2018.151. Epub 2018 Jul 24.

PMID:
30037355
48.

Activity of ceftolozane-tazobactam against Escherichia coli isolates from U.S. veterans (2011) in relation to co-resistance and sequence type 131 (ST131) H30 and H30Rx status.

Johnston BD, Thuras P, Johnson JR.

PLoS One. 2018 Jul 10;13(7):e0200442. doi: 10.1371/journal.pone.0200442. eCollection 2018.

49.

Rapid and Extensive Expansion in the United States of a New Multidrug-resistant Escherichia coli Clonal Group, Sequence Type 1193.

Tchesnokova VL, Rechkina E, Larson L, Ferrier K, Weaver JL, Schroeder DW, She R, Butler-Wu SM, Aguero-Rosenfeld ME, Zerr D, Fang FC, Ralston J, Riddell K, Scholes D, Weissman S, Parker K, Spellberg B, Johnson JR, Sokurenko EV.

Clin Infect Dis. 2019 Jan 7;68(2):334-337. doi: 10.1093/cid/ciy525.

50.

The Uropathogenic Escherichia coli Subclone Sequence Type 131-H30 Is Responsible for Most Antibiotic Prescription Errors at an Urgent Care Clinic.

Tchesnokova V, Riddell K, Scholes D, Johnson JR, Sokurenko EV.

Clin Infect Dis. 2019 Feb 15;68(5):781-787. doi: 10.1093/cid/ciy523.

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