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Human Infant Pants for Postoperative Protection during Social Housing of New Zealand White Rabbits (Oryctolagus cuniculus).

Bartley KA, Johnson CH.

J Am Assoc Lab Anim Sci. 2019 May 8. doi: 10.30802/AALAS-JAALAS-18-000116. [Epub ahead of print]


An evaluation of the epidemiology, management and outcomes for perforated peptic ulcers across the North of England over 15 years: A retrospective cohort study.

Johnson CH, McLean RC, McCallum I, Perren D, Phillips AW.

Int J Surg. 2019 Apr;64:24-32. doi: 10.1016/j.ijsu.2019.03.005. Epub 2019 Mar 11.


Palbociclib and Fulvestrant Act in Synergy to Modulate Central Carbon Metabolism in Breast Cancer Cells.

Warth B, Palermo A, Rattray NJW, Lee NV, Zhu Z, Hoang LT, Cai Y, Mazurek A, Dann S, VanArsdale T, Fantin VR, Shields D, Siuzdak G, Johnson CH.

Metabolites. 2019 Jan 2;9(1). pii: E7. doi: 10.3390/metabo9010007.


Defining Early-Onset Colon and Rectal Cancers.

Jacobs D, Zhu R, Luo J, Grisotti G, Heller DR, Kurbatov V, Johnson CH, Zhang Y, Khan SA.

Front Oncol. 2018 Nov 6;8:504. doi: 10.3389/fonc.2018.00504. eCollection 2018.


Evaluation of potential carcinogenicity of organic chemicals in synthetic turf crumb rubber.

Perkins AN, Inayat-Hussain SH, Deziel NC, Johnson CH, Ferguson SS, Garcia-Milian R, Thompson DC, Vasiliou V.

Environ Res. 2019 Feb;169:163-172. doi: 10.1016/j.envres.2018.10.018. Epub 2018 Oct 24.


The Safe Shelter Collaborative: An Innovative Approach to Locating Emergency Shelter for Human Trafficking and Domestic Violence Survivors.

Danis FS, Keisel-Caballero K, Johnson CH.

Violence Against Women. 2019 May;25(7):882-899. doi: 10.1177/1077801218805585. Epub 2018 Oct 25.


Revealing circadian mechanisms of integration and resilience by visualizing clock proteins working in real time.

Mori T, Sugiyama S, Byrne M, Johnson CH, Uchihashi T, Ando T.

Nat Commun. 2018 Aug 14;9(1):3245. doi: 10.1038/s41467-018-05438-4.


Characteristics associated with lack of HIV testing during pregnancy and delivery in 36 U.S. states, 2004-2013.

Koumans EH, Harrison A, House LD, Burley K, Ruffo N, Smith R, FitzHarris L, Johnson CH, Taylor AW, Nesheim SR.

Int J STD AIDS. 2018 Oct;29(12):1225-1233. doi: 10.1177/0956462418780053. Epub 2018 Jul 4.


Stigmatizing Attitudes Toward People Living with HIV Among Adults and Adolescents in the United States.

Pitasi MA, Chavez PR, DiNenno EA, Jeffries WL 4th, Johnson CH, Demeke H, August EM, Bradley H.

AIDS Behav. 2018 Dec;22(12):3887-3891. doi: 10.1007/s10461-018-2188-0.


Changes in perceived discrimination in healthcare settings reported by HIV patients in the United States from 1996 to 2011-2013.

Valverde EE, Beer L, Johnson CH, Baugher A.

AIDS. 2018 Sep 10;32(14):2075-2076. doi: 10.1097/QAD.0000000000001908.


Common femoral artery aneurysm repair using bifurcated graft.

Hotonu SA, Johnson CHN, Kansal N, Bhattacharya V.

BMJ Case Rep. 2018 Jun 15;2018. pii: bcr-2017-223331. doi: 10.1136/bcr-2017-223331.


Distinctive features of gastrointestinal stromal tumors arising from the colon and rectum.

Zhu R, Liu F, Grisotti G, Pérez-Irizarry J, Cha CH, Johnson CH, Boffa DJ, Han D, Johung KL, Zhang Y, Khan SA.

J Gastrointest Oncol. 2018 Apr;9(2):231-240. doi: 10.21037/jgo.2017.11.12.


Spontaneous DNA damage to the nuclear genome promotes senescence, redox imbalance and aging.

Robinson AR, Yousefzadeh MJ, Rozgaja TA, Wang J, Li X, Tilstra JS, Feldman CH, Gregg SQ, Johnson CH, Skoda EM, Frantz MC, Bell-Temin H, Pope-Varsalona H, Gurkar AU, Nasto LA, Robinson RAS, Fuhrmann-Stroissnigg H, Czerwinska J, McGowan SJ, Cantu-Medellin N, Harris JB, Maniar S, Ross MA, Trussoni CE, LaRusso NF, Cifuentes-Pagano E, Pagano PJ, Tudek B, Vo NV, Rigatti LH, Opresko PL, Stolz DB, Watkins SC, Burd CE, Croix CMS, Siuzdak G, Yates NA, Robbins PD, Wang Y, Wipf P, Kelley EE, Niedernhofer LJ.

Redox Biol. 2018 Jul;17:259-273. doi: 10.1016/j.redox.2018.04.007. Epub 2018 Apr 13.


Prenatal HIV Testing and the Impact of State HIV Testing Laws, 2004 to 2011.

FitzHarris LF, Johnson CH, Nesheim SR, Oussayef NL, Taylor AW, Harrison AT, Ruffo N, Burley K, House L, Koumans EH.

Sex Transm Dis. 2018 Sep;45(9):583-587. doi: 10.1097/OLQ.0000000000000821.


Yale School of Public Health Symposium on tissue imaging mass spectrometry: illuminating phenotypic heterogeneity and drug disposition at the molecular level.

Charkoftaki G, Rattray NJW, Andrén PE, Caprioli RM, Castellino S, Duncan MW, Goodwin RJA, Schey KL, Shahidi-Latham SK, Veselkov KA, Johnson CH, Vasiliou V.

Hum Genomics. 2018 Feb 27;12(1):10. doi: 10.1186/s40246-018-0142-x. No abstract available.


Re-engineering and evaluation of anti-DNA autoantibody 3E10 for therapeutic applications.

Rattray Z, Dubljevic V, Rattray NJW, Greenwood DL, Johnson CH, Campbell JA, Hansen JE.

Biochem Biophys Res Commun. 2018 Feb 12;496(3):858-864. doi: 10.1016/j.bbrc.2018.01.139. Epub 2018 Jan 31.


Beyond genomics: understanding exposotypes through metabolomics.

Rattray NJW, Deziel NC, Wallach JD, Khan SA, Vasiliou V, Ioannidis JPA, Johnson CH.

Hum Genomics. 2018 Jan 26;12(1):4. doi: 10.1186/s40246-018-0134-x. Review.


Metabolomics Reveals that Dietary Xenoestrogens Alter Cellular Metabolism Induced by Palbociclib/Letrozole Combination Cancer Therapy.

Warth B, Raffeiner P, Granados A, Huan T, Fang M, Forsberg EM, Benton HP, Goetz L, Johnson CH, Siuzdak G.

Cell Chem Biol. 2018 Mar 15;25(3):291-300.e3. doi: 10.1016/j.chembiol.2017.12.010. Epub 2018 Jan 11.


Carnitine palmitoyltransferase 1C regulates cancer cell senescence through mitochondria-associated metabolic reprograming.

Wang Y, Chen Y, Guan L, Zhang H, Huang Y, Johnson CH, Wu Z, Gonzalez FJ, Yu A, Huang P, Wang Y, Yang S, Chen P, Fan X, Huang M, Bi H.

Cell Death Differ. 2018 Mar;25(4):733-746. doi: 10.1038/s41418-017-0013-3. Epub 2018 Jan 9.


Yale school of public health symposium on lifetime exposures and human health: the exposome; summary and future reflections.

Johnson CH, Athersuch TJ, Collman GW, Dhungana S, Grant DF, Jones DP, Patel CJ, Vasiliou V.

Hum Genomics. 2017 Dec 8;11(1):32. doi: 10.1186/s40246-017-0128-0.


How well are U.S. primary care providers assessing whether their male patients have male sex partners?

Chávez PRG, Wesolowski LG, Peters PJ, Johnson CH, Nasrullah M, Oraka E, August EM, DiNenno E.

Prev Med. 2018 Feb;107:75-80. doi: 10.1016/j.ypmed.2017.11.006. Epub 2017 Nov 7.


Metabolomics guided pathway analysis reveals link between cancer metastasis, cholesterol sulfate, and phospholipids.

Johnson CH, Santidrian AF, LeBoeuf SE, Kurczy ME, Rattray NJW, Rattray Z, Warth B, Ritland M, Hoang LT, Loriot C, Higa J, Hansen JE, Felding BH, Siuzdak G.

Cancer Metab. 2017 Oct 31;5:9. doi: 10.1186/s40170-017-0171-2. eCollection 2017.


Exposome-Scale Investigations Guided by Global Metabolomics, Pathway Analysis, and Cognitive Computing.

Warth B, Spangler S, Fang M, Johnson CH, Forsberg EM, Granados A, Martin RL, Domingo-Almenara X, Huan T, Rinehart D, Montenegro-Burke JR, Hilmers B, Aisporna A, Hoang LT, Uritboonthai W, Benton HP, Richardson SD, Williams AJ, Siuzdak G.

Anal Chem. 2017 Nov 7;89(21):11505-11513. doi: 10.1021/acs.analchem.7b02759. Epub 2017 Oct 9.


Revealing Oft-cited but Unpublished Papers of Colin Pittendrigh and Coworkers.

Tackenberg MC, Johnson CH, Page TL, Daan S.

J Biol Rhythms. 2017 Aug;32(4):291-294. doi: 10.1177/0748730417716685. Epub 2017 Aug 2.


Environmental influences in the etiology of colorectal cancer: the premise of metabolomics.

Rattray NJW, Charkoftaki G, Rattray Z, Hansen JE, Vasiliou V, Johnson CH.

Curr Pharmacol Rep. 2017 Jun;3(3):114-125. doi: 10.1007/s40495-017-0088-z. Epub 2017 Apr 7.


Isotopically nonstationary 13C flux analysis of cyanobacterial isobutyraldehyde production.

Jazmin LJ, Xu Y, Cheah YE, Adebiyi AO, Johnson CH, Young JD.

Metab Eng. 2017 Jul;42:9-18. doi: 10.1016/j.ymben.2017.05.001. Epub 2017 May 4.


Systems biology guided by XCMS Online metabolomics.

Huan T, Forsberg EM, Rinehart D, Johnson CH, Ivanisevic J, Benton HP, Fang M, Aisporna A, Hilmers B, Poole FL, Thorgersen MP, Adams MWW, Krantz G, Fields MW, Robbins PD, Niedernhofer LJ, Ideker T, Majumder EL, Wall JD, Rattray NJW, Goodacre R, Lairson LL, Siuzdak G.

Nat Methods. 2017 Apr 27;14(5):461-462. doi: 10.1038/nmeth.4260. No abstract available.


Factors Associated With Condom Use Among Sexually Active US Adults, National Survey of Family Growth, 2006-2010 and 2011-2013.

Nasrullah M, Oraka E, Chavez PR, Johnson CH, DiNenno E.

J Sex Med. 2017 Apr;14(4):541-550. doi: 10.1016/j.jsxm.2017.02.015.


PPARα regulates tumor cell proliferation and senescence via a novel target gene carnitine palmitoyltransferase 1C.

Chen Y, Wang Y, Huang Y, Zeng H, Hu B, Guan L, Zhang H, Yu AM, Johnson CH, Gonzalez FJ, Huang M, Bi H.

Carcinogenesis. 2017 Apr 1;38(4):474-483. doi: 10.1093/carcin/bgx023.


Timing the day: what makes bacterial clocks tick?

Johnson CH, Zhao C, Xu Y, Mori T.

Nat Rev Microbiol. 2017 Apr;15(4):232-242. doi: 10.1038/nrmicro.2016.196. Epub 2017 Feb 20. Review.


Metabolite and Microbiome Interplay in Cancer Immunotherapy.

Johnson CH, Spilker ME, Goetz L, Peterson SN, Siuzdak G.

Cancer Res. 2016 Nov 1;76(21):6146-6152. Epub 2016 Oct 11. Review.


Trends in Racial and Ethnic Disparities in Antiretroviral Therapy Prescription and Viral Suppression in the United States, 2009-2013.

Beer L, Bradley H, Mattson CL, Johnson CH, Hoots B, Shouse RL; Medical Monitoring Project.

J Acquir Immune Defic Syndr. 2016 Dec 1;73(4):446-453.


Coupling optogenetic stimulation with NanoLuc-based luminescence (BRET) Ca++ sensing.

Yang J, Cumberbatch D, Centanni S, Shi SQ, Winder D, Webb D, Johnson CH.

Nat Commun. 2016 Oct 27;7:13268. doi: 10.1038/ncomms13268.


Juxtaarticular Myxoma in a Pigtail Macaque (Macaca nemestrina).

Skinner BL, Johnson CH, Lacy SH.

Comp Med. 2016;66(5):420-423.


Design and Weighting Methods for a Nationally Representative Sample of HIV-infected Adults Receiving Medical Care in the United States-Medical Monitoring Project.

Iachan R, Johnson CH, Harding RL, Kyle T, Saavedra P, Frazier EL, Beer L, Mattson CL, Skarbinski J.

Open AIDS J. 2016 Aug 19;10:164-81. doi: 10.2174/1874613601610010164. eCollection 2016.


The enrichment club.

Johnson CH, Carter K.

Lab Anim (NY). 2016 Aug 23;45(9):341. doi: 10.1038/laban.1092. No abstract available.


Monitoring Intracellular pH Change with a Genetically Encoded and Ratiometric Luminescence Sensor in Yeast and Mammalian Cells.

Zhang Y, Robertson JB, Xie Q, Johnson CH.

Methods Mol Biol. 2016;1461:117-30. doi: 10.1007/978-1-4939-3813-1_9.


Metabolomics reveals mycoplasma contamination interferes with the metabolism of PANC-1 cells.

Yu T, Wang Y, Zhang H, Johnson CH, Jiang Y, Li X, Wu Z, Liu T, Krausz KW, Yu A, Gonzalez FJ, Huang M, Bi H.

Anal Bioanal Chem. 2016 Jun;408(16):4267-73. doi: 10.1007/s00216-016-9525-9. Epub 2016 Apr 13.


Evolution of KaiC-Dependent Timekeepers: A Proto-circadian Timing Mechanism Confers Adaptive Fitness in the Purple Bacterium Rhodopseudomonas palustris.

Ma P, Mori T, Zhao C, Thiel T, Johnson CH.

PLoS Genet. 2016 Mar 16;12(3):e1005922. doi: 10.1371/journal.pgen.1005922. eCollection 2016 Mar.


Metabolomics: beyond biomarkers and towards mechanisms.

Johnson CH, Ivanisevic J, Siuzdak G.

Nat Rev Mol Cell Biol. 2016 Jul;17(7):451-9. doi: 10.1038/nrm.2016.25. Epub 2016 Mar 16.


Molecular analyses of circadian gene variants reveal sex-dependent links between depression and clocks.

Shi SQ, White MJ, Borsetti HM, Pendergast JS, Hida A, Ciarleglio CM, de Verteuil PA, Cadar AG, Cala C, McMahon DG, Shelton RC, Williams SM, Johnson CH.

Transl Psychiatry. 2016 Mar 1;6:e748. doi: 10.1038/tp.2016.9.


Global metabolomics reveals metabolic dysregulation in ischemic retinopathy.

Paris LP, Johnson CH, Aguilar E, Usui Y, Cho K, Hoang LT, Feitelberg D, Benton HP, Westenskow PD, Kurihara T, Trombley J, Tsubota K, Ueda S, Wakabayashi Y, Patti GJ, Ivanisevic J, Siuzdak G, Friedlander M.

Metabolomics. 2016;12:15. doi: 10.1007/s11306-015-0877-5. Epub 2015 Nov 18.


Circadian Clocks: Unexpected Biochemical Cogs.

Mori T, Mchaourab H, Johnson CH.

Curr Biol. 2015 Oct 5;25(19):R842-4. doi: 10.1016/j.cub.2015.08.026.


Thermal Degradation of Small Molecules: A Global Metabolomic Investigation.

Fang M, Ivanisevic J, Benton HP, Johnson CH, Patti GJ, Hoang LT, Uritboonthai W, Kurczy ME, Siuzdak G.

Anal Chem. 2015 Nov 3;87(21):10935-41. doi: 10.1021/acs.analchem.5b03003. Epub 2015 Oct 14.


Weighted Multilevel Models: A Case Study.

West BT, Beer L, Gremel GW, Weiser J, Johnson CH, Garg S, Skarbinski J.

Am J Public Health. 2015 Nov;105(11):2214-5. doi: 10.2105/AJPH.2015.302842. Epub 2015 Sep 17. No abstract available.


Determining conserved metabolic biomarkers from a million database queries.

Kurczy ME, Ivanisevic J, Johnson CH, Uritboonthai W, Hoang L, Fang M, Hicks M, Aldebot A, Rinehart D, Mellander LJ, Tautenhahn R, Patti GJ, Spilker ME, Benton HP, Siuzdak G.

Bioinformatics. 2015 Dec 1;31(23):3721-4. doi: 10.1093/bioinformatics/btv475. Epub 2015 Aug 13.


Arteriovenous Blood Metabolomics: A Readout of Intra-Tissue Metabostasis.

Ivanisevic J, Elias D, Deguchi H, Averell PM, Kurczy M, Johnson CH, Tautenhahn R, Zhu Z, Watrous J, Jain M, Griffin J, Patti GJ, Siuzdak G.

Sci Rep. 2015 Aug 5;5:12757. doi: 10.1038/srep12757.


Alterations in Spinal Cord Metabolism during Treatment of Neuropathic Pain.

Johnson CH, Patti GJ, Courade JP, Shriver LP, Hoang LT, Manchester M, Siuzdak G.

J Neuroimmune Pharmacol. 2015 Sep;10(3):396-401. doi: 10.1007/s11481-015-9624-y. Epub 2015 Aug 2.


Methods to Obtain a Representative Sample of Ryan White-Funded Patients for a Needs Assessment in Los Angeles County: Results from a Replicable Approach.

Dierst-Davies R, Wohl AR, Pinney G, Johnson CH, Vincent-Jones C, Pérez MJ.

J Int Assoc Provid AIDS Care. 2017 Jul/Aug;16(4):383-395. doi: 10.1177/2325957415592476. Epub 2015 Jul 2.


PER2 Differentially Regulates Clock Phosphorylation versus Transcription by Reciprocal Switching of CK1ε Activity.

Qin X, Mori T, Zhang Y, Johnson CH.

J Biol Rhythms. 2015 Jun;30(3):206-16. doi: 10.1177/0748730415582127.

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