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Items: 1 to 50 of 100

1.

Identification of rfk-1, a Meiotic Driver Undergoing RNA Editing in Neurospora.

Rhoades NA, Harvey AM, Samarajeewa DA, Svedberg J, Yusifov A, Abusharekh A, Manitchotpisit P, Brown DW, Sharp KJ, Rehard DG, Peters J, Ostolaza-Maldonado X, Stephenson J, Shiu PKT, Johannesson H, Hammond TM.

Genetics. 2019 May;212(1):93-110. doi: 10.1534/genetics.119.302122. Epub 2019 Mar 27.

PMID:
30918007
2.

Two Basidiomycete Fungi in the Cortex of Wolf Lichens.

Tuovinen V, Ekman S, Thor G, Vanderpool D, Spribille T, Johannesson H.

Curr Biol. 2019 Feb 4;29(3):476-483.e5. doi: 10.1016/j.cub.2018.12.022. Epub 2019 Jan 17.

3.

Asexual reproduction and growth rate: independent and plastic life history traits in Neurospora crassa.

Anderson JL, Nieuwenhuis BPS, Johannesson H.

ISME J. 2019 Mar;13(3):780-788. doi: 10.1038/s41396-018-0294-7. Epub 2018 Nov 9.

PMID:
30413765
4.

Convergent evolution of complex genomic rearrangements in two fungal meiotic drive elements.

Svedberg J, Hosseini S, Chen J, Vogan AA, Mozgova I, Hennig L, Manitchotpisit P, Abusharekh A, Hammond TM, Lascoux M, Johannesson H.

Nat Commun. 2018 Oct 12;9(1):4242. doi: 10.1038/s41467-018-06562-x.

5.

Measurement Quench in Many-Body Systems.

Bayat A, Alkurtass B, Sodano P, Johannesson H, Bose S.

Phys Rev Lett. 2018 Jul 20;121(3):030601. doi: 10.1103/PhysRevLett.121.030601.

PMID:
30085809
6.

Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: evidence from high-throughput sequencing.

Onuț-Brännström I, Benjamin M, Scofield DG, Heiðmarsson S, Andersson MGI, Lindström ES, Johannesson H.

Sci Rep. 2018 Mar 13;8(1):4406. doi: 10.1038/s41598-018-22470-y.

7.

Host genetic variation strongly influences the microbiome structure and function in fungal fruiting-bodies.

Pent M, Hiltunen M, Põldmaa K, Furneaux B, Hildebrand F, Johannesson H, Ryberg M, Bahram M.

Environ Microbiol. 2018 May;20(5):1641-1650. doi: 10.1111/1462-2920.14069. Epub 2018 Mar 25.

PMID:
29441658
8.

Large-scale suppression of recombination predates genomic rearrangements in Neurospora tetrasperma.

Sun Y, Svedberg J, Hiltunen M, Corcoran P, Johannesson H.

Nat Commun. 2017 Oct 26;8(1):1140. doi: 10.1038/s41467-017-01317-6.

9.

A worldwide phylogeography of the whiteworm lichens Thamnolia reveals three lineages with distinct habitats and evolutionary histories.

Onuţ-Brännström I, Tibell L, Johannesson H.

Ecol Evol. 2017 Apr 13;7(10):3602-3615. doi: 10.1002/ece3.2917. eCollection 2017 May.

10.

Loschmidt Echo Revivals: Critical and Noncritical.

Jafari R, Johannesson H.

Phys Rev Lett. 2017 Jan 6;118(1):015701. doi: 10.1103/PhysRevLett.118.015701. Epub 2017 Jan 5.

PMID:
28106441
11.

A systematic search strategy identifies cubilin as independent prognostic marker for renal cell carcinoma.

Gremel G, Djureinovic D, Niinivirta M, Laird A, Ljungqvist O, Johannesson H, Bergman J, Edqvist PH, Navani S, Khan N, Patil T, Sivertsson Å, Uhlén M, Harrison DJ, Ullenhag GJ, Stewart GD, Pontén F.

BMC Cancer. 2017 Jan 4;17(1):9. doi: 10.1186/s12885-016-3030-6.

12.

Epigenetic Control of Phenotypic Plasticity in the Filamentous Fungus Neurospora crassa.

Kronholm I, Johannesson H, Ketola T.

G3 (Bethesda). 2016 Dec 7;6(12):4009-4022. doi: 10.1534/g3.116.033860.

13.

Basidiomycete yeasts in the cortex of ascomycete macrolichens.

Spribille T, Tuovinen V, Resl P, Vanderpool D, Wolinski H, Aime MC, Schneider K, Stabentheiner E, Toome-Heller M, Thor G, Mayrhofer H, Johannesson H, McCutcheon JP.

Science. 2016 Jul 29;353(6298):488-92. doi: 10.1126/science.aaf8287. Epub 2016 Jul 21.

14.

The Ecology and Evolutionary Dynamics of Meiotic Drive.

Lindholm AK, Dyer KA, Firman RC, Fishman L, Forstmeier W, Holman L, Johannesson H, Knief U, Kokko H, Larracuente AM, Manser A, Montchamp-Moreau C, Petrosyan VG, Pomiankowski A, Presgraves DC, Safronova LD, Sutter A, Unckless RL, Verspoor RL, Wedell N, Wilkinson GS, Price TAR.

Trends Ecol Evol. 2016 Apr;31(4):315-326. doi: 10.1016/j.tree.2016.02.001. Epub 2016 Feb 23. Review.

PMID:
26920473
15.

Introgression maintains the genetic integrity of the mating-type determining chromosome of the fungus Neurospora tetrasperma.

Corcoran P, Anderson JL, Jacobson DJ, Sun Y, Ni P, Lascoux M, Johannesson H.

Genome Res. 2016 Apr;26(4):486-98. doi: 10.1101/gr.197244.115. Epub 2016 Feb 18.

16.

Contrasted patterns in mating-type chromosomes in fungi: hotspots versus coldspots of recombination.

Idnurm A, Hood ME, Johannesson H, Giraud T.

Fungal Biol Rev. 2015 Dec 1;29(3-4):220-229.

17.

Loss of ASRGL1 expression is an independent biomarker for disease-specific survival in endometrioid endometrial carcinoma.

Edqvist PH, Huvila J, Forsström B, Talve L, Carpén O, Salvesen HB, Krakstad C, Grénman S, Johannesson H, Ljungqvist O, Uhlén M, Pontén F, Auranen A.

Gynecol Oncol. 2015 Jun;137(3):529-37. doi: 10.1016/j.ygyno.2015.03.055. Epub 2015 Apr 7.

PMID:
25858696
18.

Intron evolution in Neurospora: the role of mutational bias and selection.

Sun Y, Whittle CA, Corcoran P, Johannesson H.

Genome Res. 2015 Jan;25(1):100-10. doi: 10.1101/gr.175653.114. Epub 2014 Oct 23.

19.

SATB1 is an independent prognostic factor in radically resected upper gastrointestinal tract adenocarcinoma.

Hedner C, Gaber A, Korkocic D, Nodin B, Uhlén M, Kuteeva E, Johannesson H, Jirström K, Eberhard J.

Virchows Arch. 2014 Dec;465(6):649-59. doi: 10.1007/s00428-014-1667-6. Epub 2014 Oct 19.

20.

Nuclear interactions in a heterokaryon: insight from the model Neurospora tetrasperma.

Samils N, Oliva J, Johannesson H.

Proc Biol Sci. 2014 Jul 7;281(1786). pii: 20140084. doi: 10.1098/rspb.2014.0084.

21.

Dynamics of transcriptome evolution in the model eukaryote Neurospora.

Whittle CA, Sun Y, Johannesson H.

J Evol Biol. 2014 Jun;27(6):1125-35. doi: 10.1111/jeb.12386. Epub 2014 May 22.

22.

A global multilocus analysis of the model fungus Neurospora reveals a single recent origin of a novel genetic system.

Corcoran P, Dettman JR, Sun Y, Luque EM, Corrochano LM, Taylor JW, Lascoux M, Johannesson H.

Mol Phylogenet Evol. 2014 Sep;78:136-47. doi: 10.1016/j.ympev.2014.05.007. Epub 2014 May 15.

PMID:
24845789
23.

An order parameter for impurity systems at quantum criticality.

Bayat A, Johannesson H, Bose S, Sodano P.

Nat Commun. 2014 May 7;5:3784. doi: 10.1038/ncomms4784.

24.

Neurospora and the dead-end hypothesis: genomic consequences of selfing in the model genus.

Gioti A, Stajich JE, Johannesson H.

Evolution. 2013 Dec;67(12):3600-16. doi: 10.1111/evo.12206. Epub 2013 Aug 5.

25.

Assessment of SOX11 expression in routine lymphoma tissue sections: characterization of new monoclonal antibodies for diagnosis of mantle cell lymphoma.

Soldini D, Valera A, Solé C, Palomero J, Amador V, Martin-Subero JI, Ribera-Cortada I, Royo C, Salaverria I, Beà S, Gonzalvo E, Johannesson H, Herrera M, Colomo L, Martinez A, Campo E.

Am J Surg Pathol. 2014 Jan;38(1):86-93. doi: 10.1097/PAS.0b013e3182a43996.

26.

Coexistence and expression profiles of two alternative splice variants of the pheromone receptor gene pre‑1 in Neurospora crassa.

Strandberg R, Tzelepis G, Johannesson H, Karlsson M.

Arch Microbiol. 2013 Nov;195(10-11):773-80. doi: 10.1007/s00203-013-0923-5.

PMID:
24022114
27.

Evolutionary dynamics of sex-biased genes in a hermaphrodite fungus.

Whittle CA, Johannesson H.

Mol Biol Evol. 2013 Nov;30(11):2435-46. doi: 10.1093/molbev/mst143. Epub 2013 Aug 20.

PMID:
23966547
28.

Sex-linked transcriptional divergence in the hermaphrodite fungus Neurospora tetrasperma.

Samils N, Gioti A, Karlsson M, Sun Y, Kasuga T, Bastiaans E, Wang Z, Li N, Townsend JP, Johannesson H.

Proc Biol Sci. 2013 Jun 19;280(1764):20130862. doi: 10.1098/rspb.2013.0862. Print 2013 Aug 7.

29.

Membranous expression of podocalyxin-like protein is an independent factor of poor prognosis in urothelial bladder cancer.

Boman K, Larsson AH, Segersten U, Kuteeva E, Johannesson H, Nodin B, Eberhard J, Uhlén M, Malmström PU, Jirström K.

Br J Cancer. 2013 Jun 11;108(11):2321-8. doi: 10.1038/bjc.2013.215. Epub 2013 May 7.

30.

Targeting HMG-CoA reductase with statins in a window-of-opportunity breast cancer trial.

Bjarnadottir O, Romero Q, Bendahl PO, Jirström K, Rydén L, Loman N, Uhlén M, Johannesson H, Rose C, Grabau D, Borgquist S.

Breast Cancer Res Treat. 2013 Apr;138(2):499-508. doi: 10.1007/s10549-013-2473-6. Epub 2013 Mar 8.

PMID:
23471651
31.

Analyses of expressed sequence tags in Neurospora reveal rapid evolution of genes associated with the early stages of sexual reproduction in fungi.

Nygren K, Wallberg A, Samils N, Stajich JE, Townsend JP, Karlsson M, Johannesson H.

BMC Evol Biol. 2012 Nov 27;12:229. doi: 10.1186/1471-2148-12-229.

32.

Entanglement probe of two-impurity Kondo physics in a spin chain.

Bayat A, Bose S, Sodano P, Johannesson H.

Phys Rev Lett. 2012 Aug 10;109(6):066403. Epub 2012 Aug 7.

PMID:
23006288
33.

Neurospora as a model to empirically test central hypotheses in eukaryotic genome evolution: why this fungal genus offers promising opportunities.

Whittle CA, Johannesson H.

Bioessays. 2012 Nov;34(11):934-7. doi: 10.1002/bies.201200110. Epub 2012 Sep 12. Review.

PMID:
22968834
34.

Quantifying functional heterothallism in the pseudohomothallic ascomycete Neurospora tetrasperma.

Corcoran P, Jacobson DJ, Bidartondo MI, Hickey PC, Kerekes JF, Taylor JW, Johannesson H.

Fungal Biol. 2012 Sep;116(9):962-75. doi: 10.1016/j.funbio.2012.06.006. Epub 2012 Jul 6.

PMID:
22954339
35.

Molecular correlates and prognostic significance of SATB1 expression in colorectal cancer.

Nodin B, Johannesson H, Wangefjord S, O'Connor DP, Lindquist KE, Uhlén M, Jirström K, Eberhard J.

Diagn Pathol. 2012 Aug 30;7:115. doi: 10.1186/1746-1596-7-115.

36.

Deciphering the relationship between mating system and the molecular evolution of the pheromone and receptor genes in Neurospora.

Nygren K, Strandberg R, Gioti A, Karlsson M, Johannesson H.

Mol Biol Evol. 2012 Dec;29(12):3827-42. doi: 10.1093/molbev/mss193. Epub 2012 Jul 30.

PMID:
22848070
37.

Large-scale introgression shapes the evolution of the mating-type chromosomes of the filamentous ascomycete Neurospora tetrasperma.

Sun Y, Corcoran P, Menkis A, Whittle CA, Andersson SG, Johannesson H.

PLoS Genet. 2012;8(7):e1002820. doi: 10.1371/journal.pgen.1002820. Epub 2012 Jul 26.

38.

Sex-specific gene expression during asexual development of Neurospora crassa.

Wang Z, Kin K, López-Giráldez F, Johannesson H, Townsend JP.

Fungal Genet Biol. 2012 Jul;49(7):533-43. doi: 10.1016/j.fgb.2012.05.004. Epub 2012 May 22.

39.

Unidirectional evolutionary transitions in fungal mating systems and the role of transposable elements.

Gioti A, Mushegian AA, Strandberg R, Stajich JE, Johannesson H.

Mol Biol Evol. 2012 Oct;29(10):3215-26. Epub 2012 May 15.

PMID:
22593224
40.

Occurrence and impact of the root-rot biocontrol agent Phlebiopsis gigantea on soil fungal communities in Picea abies forests of northern Europe.

Menkis A, Burokienė D, Gaitnieks T, Uotila A, Johannesson H, Rosling A, Finlay RD, Stenlid J, Vasaitis R.

FEMS Microbiol Ecol. 2012 Aug;81(2):438-45. doi: 10.1111/j.1574-6941.2012.01366.x. Epub 2012 Apr 18.

41.

Genome-wide selection on codon usage at the population level in the fungal model organism Neurospora crassa.

Whittle CA, Sun Y, Johannesson H.

Mol Biol Evol. 2012 Aug;29(8):1975-86. doi: 10.1093/molbev/mss065. Epub 2012 Feb 14.

PMID:
22334579
42.

Arabidopsis thaliana TERMINAL FLOWER2 is involved in light-controlled signalling during seedling photomorphogenesis.

Valdés AE, Rizzardi K, Johannesson H, Para A, Sundås-Larsson A, Landberg K.

Plant Cell Environ. 2012 Jun;35(6):1013-25. doi: 10.1111/j.1365-3040.2011.02468.x. Epub 2012 Jan 9.

43.

High nuclear RBM3 expression is associated with an improved prognosis in colorectal cancer.

Hjelm B, Brennan DJ, Zendehrokh N, Eberhard J, Nodin B, Gaber A, Pontén F, Johannesson H, Smaragdi K, Frantz C, Hober S, Johnson LB, Påhlman S, Jirström K, Uhlen M.

Proteomics Clin Appl. 2011 Dec;5(11-12):624-35. doi: 10.1002/prca.201100020.

PMID:
21956899
44.

Generation of monospecific antibodies based on affinity capture of polyclonal antibodies.

Hjelm B, Forsström B, Igel U, Johannesson H, Stadler C, Lundberg E, Ponten F, Sjöberg A, Rockberg J, Schwenk JM, Nilsson P, Johansson C, Uhlén M.

Protein Sci. 2011 Nov;20(11):1824-35. doi: 10.1002/pro.716. Epub 2011 Oct 12.

45.

Applications of hyperpolarized agents in solutions.

Ardenkjaer-Larsen JH, Jóhannesson H, Petersson JS, Wolber J.

Methods Mol Biol. 2011;771:655-89. doi: 10.1007/978-1-61779-219-9_33.

PMID:
21874502
46.

Hyperpolarized molecules in solution.

Ardenkjaer-Larsen JH, Jóhannesson H, Petersson JS, Wolber J.

Methods Mol Biol. 2011;771:205-26. doi: 10.1007/978-1-61779-219-9_11.

PMID:
21874480
47.

A comprehensive phylogeny of Neurospora reveals a link between reproductive mode and molecular evolution in fungi.

Nygren K, Strandberg R, Wallberg A, Nabholz B, Gustafsson T, García D, Cano J, Guarro J, Johannesson H.

Mol Phylogenet Evol. 2011 Jun;59(3):649-63. doi: 10.1016/j.ympev.2011.03.023. Epub 2011 Mar 23.

PMID:
21439389
48.

Evolution of synonymous codon usage in Neurospora tetrasperma and Neurospora discreta.

Whittle CA, Sun Y, Johannesson H.

Genome Biol Evol. 2011;3:332-43. doi: 10.1093/gbe/evr018. Epub 2011 Mar 14.

49.
50.

Consequences of reproductive mode on genome evolution in fungi.

Whittle CA, Nygren K, Johannesson H.

Fungal Genet Biol. 2011 Jul;48(7):661-7. doi: 10.1016/j.fgb.2011.02.005. Epub 2011 Mar 6. Review.

PMID:
21362492

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