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Items: 22

1.

Mechanism of NMDA receptor channel block by MK-801 and memantine.

Song X, Jensen MØ, Jogini V, Stein RA, Lee CH, Mchaourab HS, Shaw DE, Gouaux E.

Nature. 2018 Apr;556(7702):515-519. doi: 10.1038/s41586-018-0039-9. Epub 2018 Apr 18.

2.

Atomic-level simulation of current-voltage relationships in single-file ion channels.

Jensen MØ, Jogini V, Eastwood MP, Shaw DE.

J Gen Physiol. 2013 May;141(5):619-32. doi: 10.1085/jgp.201210820. Epub 2013 Apr 15.

3.

Expression, purification, and reconstitution of the voltage-sensing domain from Ci-VSP.

Li Q, Jogini V, Wanderling S, Cortes DM, Perozo E.

Biochemistry. 2012 Oct 16;51(41):8132-42. doi: 10.1021/bi300980q. Epub 2012 Oct 5.

4.

Mechanism of Cd2+ coordination during slow inactivation in potassium channels.

Raghuraman H, Cordero-Morales JF, Jogini V, Pan AC, Kollewe A, Roux B, Perozo E.

Structure. 2012 Aug 8;20(8):1332-42. doi: 10.1016/j.str.2012.03.027. Epub 2012 Jul 5.

5.

Mechanism of voltage gating in potassium channels.

Jensen MØ, Jogini V, Borhani DW, Leffler AE, Dror RO, Shaw DE.

Science. 2012 Apr 13;336(6078):229-33. doi: 10.1126/science.1216533.

6.

A multipoint hydrogen-bond network underlying KcsA C-type inactivation.

Cordero-Morales JF, Jogini V, Chakrapani S, Perozo E.

Biophys J. 2011 May 18;100(10):2387-93. doi: 10.1016/j.bpj.2011.01.073.

7.

On the structural basis of modal gating behavior in K(+) channels.

Chakrapani S, Cordero-Morales JF, Jogini V, Pan AC, Cortes DM, Roux B, Perozo E.

Nat Struct Mol Biol. 2011 Jan;18(1):67-74. doi: 10.1038/nsmb.1968. Epub 2010 Dec 26.

8.

Voltage profile along the permeation pathway of an open channel.

Contreras JE, Chen J, Lau AY, Jogini V, Roux B, Holmgren M.

Biophys J. 2010 Nov 3;99(9):2863-9. doi: 10.1016/j.bpj.2010.08.053.

9.

Structural dynamics of the magnesium-bound conformation of CorA in a lipid bilayer.

Dalmas O, Cuello LG, Jogini V, Cortes DM, Roux B, Perozo E.

Structure. 2010 Jul 14;18(7):868-78. doi: 10.1016/j.str.2010.04.009.

10.

Structural basis for the coupling between activation and inactivation gates in K(+) channels.

Cuello LG, Jogini V, Cortes DM, Pan AC, Gagnon DG, Dalmas O, Cordero-Morales JF, Chakrapani S, Roux B, Perozo E.

Nature. 2010 Jul 8;466(7303):272-5. doi: 10.1038/nature09136.

11.

Structural mechanism of C-type inactivation in K(+) channels.

Cuello LG, Jogini V, Cortes DM, Perozo E.

Nature. 2010 Jul 8;466(7303):203-8. doi: 10.1038/nature09153.

12.

Calculation of the gating charge for the Kv1.2 voltage-activated potassium channel.

Khalili-Araghi F, Jogini V, Yarov-Yarovoy V, Tajkhorshid E, Roux B, Schulten K.

Biophys J. 2010 May 19;98(10):2189-98. doi: 10.1016/j.bpj.2010.02.056.

13.

Principles of conduction and hydrophobic gating in K+ channels.

Jensen MØ, Borhani DW, Lindorff-Larsen K, Maragakis P, Jogini V, Eastwood MP, Dror RO, Shaw DE.

Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):5833-8. doi: 10.1073/pnas.0911691107. Epub 2010 Mar 15.

14.

Design and characterization of a constitutively open KcsA.

Cuello LG, Jogini V, Cortes DM, Sompornpisut A, Purdy MD, Wiener MC, Perozo E.

FEBS Lett. 2010 Mar 19;584(6):1133-8. doi: 10.1016/j.febslet.2010.02.015. Epub 2010 Feb 12.

15.

A molecular mechanism for proton-dependent gating in KcsA.

Cuello LG, Cortes DM, Jogini V, Sompornpisut A, Perozo E.

FEBS Lett. 2010 Mar 19;584(6):1126-32. doi: 10.1016/j.febslet.2010.02.003. Epub 2010 Feb 6.

16.

Atomic constraints between the voltage sensor and the pore domain in a voltage-gated K+ channel of known structure.

Lewis A, Jogini V, Blachowicz L, Lainé M, Roux B.

J Gen Physiol. 2008 Jun;131(6):549-61. doi: 10.1085/jgp.200809962.

17.

Molecular driving forces determining potassium channel slow inactivation.

Cordero-Morales JF, Jogini V, Lewis A, Vásquez V, Cortes DM, Roux B, Perozo E.

Nat Struct Mol Biol. 2007 Nov;14(11):1062-9. Epub 2007 Oct 7.

PMID:
17922012
18.

Dynamics of the Kv1.2 voltage-gated K+ channel in a membrane environment.

Jogini V, Roux B.

Biophys J. 2007 Nov 1;93(9):3070-82. Epub 2007 Aug 17.

19.

Mechanism of intracellular block of the KcsA K+ channel by tetrabutylammonium: insights from X-ray crystallography, electrophysiology and replica-exchange molecular dynamics simulations.

Faraldo-Gómez JD, Kutluay E, Jogini V, Zhao Y, Heginbotham L, Roux B.

J Mol Biol. 2007 Jan 19;365(3):649-62. Epub 2006 Sep 29.

PMID:
17070844
20.

Molecular determinants of gating at the potassium-channel selectivity filter.

Cordero-Morales JF, Cuello LG, Zhao Y, Jogini V, Cortes DM, Roux B, Perozo E.

Nat Struct Mol Biol. 2006 Apr;13(4):311-8. Epub 2006 Mar 12.

PMID:
16532009
21.

Electrostatics of the intracellular vestibule of K+ channels.

Jogini V, Roux B.

J Mol Biol. 2005 Nov 25;354(2):272-88. Epub 2005 Sep 30. Erratum in: J Mol Biol. 2007 Nov 9;373(5):1374.

PMID:
16242718
22.

Transglutaminase 5 is regulated by guanine-adenine nucleotides.

Candi E, Paradisi A, Terrinoni A, Pietroni V, Oddi S, Cadot B, Jogini V, Meiyappan M, Clardy J, Finazzi-Agro A, Melino G.

Biochem J. 2004 Jul 1;381(Pt 1):313-9.

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