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Deletions associated with stabilization of the Top1 cleavage complex in yeast are products of the nonhomologous end-joining pathway.

Cho JE, Jinks-Robertson S.

Proc Natl Acad Sci U S A. 2019 Oct 21. pii: 201914081. doi: 10.1073/pnas.1914081116. [Epub ahead of print]


Role of the Srs2-Rad51 Interaction Domain in Crossover Control in Saccharomyces cerevisiae.

Jenkins SS, Gore S, Guo X, Liu J, Ede C, Veaute X, Jinks-Robertson S, Kowalczykowski SC, Heyer WD.

Genetics. 2019 Aug;212(4):1133-1145. doi: 10.1534/genetics.119.302337. Epub 2019 May 29.


Mismatch recognition and subsequent processing have distinct effects on mitotic recombination intermediates and outcomes in yeast.

Hum YF, Jinks-Robertson S.

Nucleic Acids Res. 2019 May 21;47(9):4554-4568. doi: 10.1093/nar/gkz126.


Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways.

Klein HL, Bačinskaja G, Che J, Cheblal A, Elango R, Epshtein A, Fitzgerald DM, Gómez-González B, Khan SR, Kumar S, Leland BA, Marie L, Mei Q, Miné-Hattab J, Piotrowska A, Polleys EJ, Putnam CD, Radchenko EA, Saada AA, Sakofsky CJ, Shim EY, Stracy M, Xia J, Yan Z, Yin Y, Aguilera A, Argueso JL, Freudenreich CH, Gasser SM, Gordenin DA, Haber JE, Ira G, Jinks-Robertson S, King MC, Kolodner RD, Kuzminov A, Lambert SA, Lee SE, Miller KM, Mirkin SM, Petes TD, Rosenberg SM, Rothstein R, Symington LS, Zawadzki P, Kim N, Lisby M, Malkova A.

Microb Cell. 2019 Jan 7;6(1):1-64. doi: 10.15698/mic2019.01.664. Review.


DNA strand-exchange patterns associated with double-strand break-induced and spontaneous mitotic crossovers in Saccharomyces cerevisiae.

Hum YF, Jinks-Robertson S.

PLoS Genet. 2018 Mar 26;14(3):e1007302. doi: 10.1371/journal.pgen.1007302. eCollection 2018 Mar.


Topoisomerase I and Genome Stability: The Good and the Bad.

Cho JE, Jinks-Robertson S.

Methods Mol Biol. 2018;1703:21-45. doi: 10.1007/978-1-4939-7459-7_2.


Effects of camptothecin or TOP1 overexpression on genetic stability in Saccharomyces cerevisiae.

Sloan R, Huang SN, Pommier Y, Jinks-Robertson S.

DNA Repair (Amst). 2017 Nov;59:69-75. doi: 10.1016/j.dnarep.2017.09.004. Epub 2017 Sep 18.


Regulation of hetDNA Length during Mitotic Double-Strand Break Repair in Yeast.

Guo X, Hum YF, Lehner K, Jinks-Robertson S.

Mol Cell. 2017 Aug 17;67(4):539-549.e4. doi: 10.1016/j.molcel.2017.07.009. Epub 2017 Aug 3.


Mitotic Gene Conversion Tracts Associated with Repair of a Defined Double-Strand Break in Saccharomyces cerevisiae.

Hum YF, Jinks-Robertson S.

Genetics. 2017 Sep;207(1):115-128. doi: 10.1534/genetics.117.300057. Epub 2017 Jul 25.


The Top1 paradox: Friend and foe of the eukaryotic genome.

Kim N, Jinks-Robertson S.

DNA Repair (Amst). 2017 Aug;56:33-41. doi: 10.1016/j.dnarep.2017.06.005. Epub 2017 Jun 9. Review.


Ribonucleotides and Transcription-Associated Mutagenesis in Yeast.

Cho JE, Jinks-Robertson S.

J Mol Biol. 2017 Oct 27;429(21):3156-3167. doi: 10.1016/j.jmb.2016.08.005. Epub 2016 Aug 7. Review.


Parallel analysis of ribonucleotide-dependent deletions produced by yeast Top1 in vitro and in vivo.

Cho JE, Huang SY, Burgers PM, Shuman S, Pommier Y, Jinks-Robertson S.

Nucleic Acids Res. 2016 Sep 19;44(16):7714-21. doi: 10.1093/nar/gkw495. Epub 2016 Jun 1.


SMRT Sequencing for Parallel Analysis of Multiple Targets and Accurate SNP Phasing.

Guo X, Lehner K, O'Connell K, Zhang J, Dave SS, Jinks-Robertson S.

G3 (Bethesda). 2015 Oct 23;5(12):2801-8. doi: 10.1534/g3.115.023317.


Elevated Genome-Wide Instability in Yeast Mutants Lacking RNase H Activity.

O'Connell K, Jinks-Robertson S, Petes TD.

Genetics. 2015 Nov;201(3):963-75. doi: 10.1534/genetics.115.182725. Epub 2015 Sep 22.


Topoisomerase 1-dependent deletions initiated by incision at ribonucleotides are biased to the non-transcribed strand of a highly activated reporter.

Cho JE, Kim N, Jinks-Robertson S.

Nucleic Acids Res. 2015 Oct 30;43(19):9306-13. doi: 10.1093/nar/gkv824. Epub 2015 Aug 13.


Genome-destabilizing effects associated with top1 loss or accumulation of top1 cleavage complexes in yeast.

Andersen SL, Sloan RS, Petes TD, Jinks-Robertson S.

PLoS Genet. 2015 Apr 1;11(4):e1005098. doi: 10.1371/journal.pgen.1005098. eCollection 2015 Apr.


Ribonucleotides in DNA: hidden in plain sight.

Jinks-Robertson S, Klein HL.

Nat Struct Mol Biol. 2015 Mar;22(3):176-8. doi: 10.1038/nsmb.2981. No abstract available.


Topoisomerase I plays a critical role in suppressing genome instability at a highly transcribed G-quadruplex-forming sequence.

Yadav P, Harcy V, Argueso JL, Dominska M, Jinks-Robertson S, Kim N.

PLoS Genet. 2014 Dec 4;10(12):e1004839. doi: 10.1371/journal.pgen.1004839. eCollection 2014 Dec.


Transcription-associated mutagenesis.

Jinks-Robertson S, Bhagwat AS.

Annu Rev Genet. 2014;48:341-59. doi: 10.1146/annurev-genet-120213-092015. Epub 2014 Sep 10. Review.


Shared genetic pathways contribute to the tolerance of endogenous and low-dose exogenous DNA damage in yeast.

Lehner K, Jinks-Robertson S.

Genetics. 2014 Oct;198(2):519-30. doi: 10.1534/genetics.114.168617. Epub 2014 Jul 24.


The role of Dbf4-dependent protein kinase in DNA polymerase ζ-dependent mutagenesis in Saccharomyces cerevisiae.

Brandão LN, Ferguson R, Santoro I, Jinks-Robertson S, Sclafani RA.

Genetics. 2014 Aug;197(4):1111-22. doi: 10.1534/genetics.114.165308. Epub 2014 May 28.


RNA∶DNA hybrids initiate quasi-palindrome-associated mutations in highly transcribed yeast DNA.

Kim N, Cho JE, Li YC, Jinks-Robertson S.

PLoS Genet. 2013 Nov;9(11):e1003924. doi: 10.1371/journal.pgen.1003924. Epub 2013 Nov 7.


Roles of exonucleases and translesion synthesis DNA polymerases during mitotic gap repair in yeast.

Guo X, Jinks-Robertson S.

DNA Repair (Amst). 2013 Dec;12(12):1024-30. doi: 10.1016/j.dnarep.2013.10.001. Epub 2013 Nov 5.


Removal of N-6-methyladenine by the nucleotide excision repair pathway triggers the repair of mismatches in yeast gap-repair intermediates.

Guo X, Jinks-Robertson S.

DNA Repair (Amst). 2013 Dec;12(12):1053-61. doi: 10.1016/j.dnarep.2013.09.006. Epub 2013 Oct 8.


The 2013 Thomas Hunt Morgan Medal: Thomas Douglas Petes.

Jinks-Robertson S, Hieter P.

Genetics. 2013 May;194(1):1-4. doi: 10.1534/genetics.113.150664.


DNA repair mechanisms and the bypass of DNA damage in Saccharomyces cerevisiae.

Boiteux S, Jinks-Robertson S.

Genetics. 2013 Apr;193(4):1025-64. doi: 10.1534/genetics.112.145219. Review.


Heteroduplex DNA position defines the roles of the Sgs1, Srs2, and Mph1 helicases in promoting distinct recombination outcomes.

Mitchel K, Lehner K, Jinks-Robertson S.

PLoS Genet. 2013;9(3):e1003340. doi: 10.1371/journal.pgen.1003340. Epub 2013 Mar 14.


The mechanism of nucleotide excision repair-mediated UV-induced mutagenesis in nonproliferating cells.

Kozmin SG, Jinks-Robertson S.

Genetics. 2013 Mar;193(3):803-17. doi: 10.1534/genetics.112.147421. Epub 2013 Jan 10.


Two distinct mechanisms of Topoisomerase 1-dependent mutagenesis in yeast.

Cho JE, Kim N, Li YC, Jinks-Robertson S.

DNA Repair (Amst). 2013 Mar 1;12(3):205-11. doi: 10.1016/j.dnarep.2012.12.004. Epub 2013 Jan 8.


The 2012 Novitski Prize: Dana Carroll.

Jinks-Robertson S.

Genetics. 2012 Jun;191(2):305-6. doi: 10.1534/genetics.112.138925. No abstract available.


Transcription as a source of genome instability.

Kim N, Jinks-Robertson S.

Nat Rev Genet. 2012 Feb 14;13(3):204-14. doi: 10.1038/nrg3152. Review.


Formaldehyde-induced mutagenesis in Saccharomyces cerevisiae: molecular properties and the roles of repair and bypass systems.

Grogan D, Jinks-Robertson S.

Mutat Res. 2012 Mar 1;731(1-2):92-8. doi: 10.1016/j.mrfmmm.2011.12.004. Epub 2011 Dec 14.


Frameshift mutagenesis: the roles of primer-template misalignment and the nonhomologous end-joining pathway in Saccharomyces cerevisiae.

Lehner K, Mudrak SV, Minesinger BK, Jinks-Robertson S.

Genetics. 2012 Feb;190(2):501-10. doi: 10.1534/genetics.111.134890. Epub 2011 Nov 17.


The dCMP transferase activity of yeast Rev1 is biologically relevant during the bypass of endogenously generated AP sites.

Kim N, Mudrak SV, Jinks-Robertson S.

DNA Repair (Amst). 2011 Dec 10;10(12):1262-71. doi: 10.1016/j.dnarep.2011.09.017. Epub 2011 Oct 22.


Guanine repeat-containing sequences confer transcription-dependent instability in an orientation-specific manner in yeast.

Kim N, Jinks-Robertson S.

DNA Repair (Amst). 2011 Sep 5;10(9):953-60. doi: 10.1016/j.dnarep.2011.07.002. Epub 2011 Aug 2.


Mutagenic processing of ribonucleotides in DNA by yeast topoisomerase I.

Kim N, Huang SN, Williams JS, Li YC, Clark AB, Cho JE, Kunkel TA, Pommier Y, Jinks-Robertson S.

Science. 2011 Jun 24;332(6037):1561-4. doi: 10.1126/science.1205016.


Role for topoisomerase 1 in transcription-associated mutagenesis in yeast.

Lippert MJ, Kim N, Cho JE, Larson RP, Schoenly NE, O'Shea SH, Jinks-Robertson S.

Proc Natl Acad Sci U S A. 2011 Jan 11;108(2):698-703. doi: 10.1073/pnas.1012363108. Epub 2010 Dec 21.


Seeking resolution: budding yeast enzymes finally make the cut.

Jinks-Robertson S.

Mol Cell. 2010 Dec 22;40(6):858-9. doi: 10.1016/j.molcel.2010.12.001.


Abasic sites in the transcribed strand of yeast DNA are removed by transcription-coupled nucleotide excision repair.

Kim N, Jinks-Robertson S.

Mol Cell Biol. 2010 Jul;30(13):3206-15. doi: 10.1128/MCB.00308-10. Epub 2010 Apr 26.


Molecular structures of crossover and noncrossover intermediates during gap repair in yeast: implications for recombination.

Mitchel K, Zhang H, Welz-Voegele C, Jinks-Robertson S.

Mol Cell. 2010 Apr 23;38(2):211-22. doi: 10.1016/j.molcel.2010.02.028.


The polymerase eta translesion synthesis DNA polymerase acts independently of the mismatch repair system to limit mutagenesis caused by 7,8-dihydro-8-oxoguanine in yeast.

Mudrak SV, Welz-Voegele C, Jinks-Robertson S.

Mol Cell Biol. 2009 Oct;29(19):5316-26. doi: 10.1128/MCB.00422-09. Epub 2009 Jul 27.


dUTP incorporation into genomic DNA is linked to transcription in yeast.

Kim N, Jinks-Robertson S.

Nature. 2009 Jun 25;459(7250):1150-3. doi: 10.1038/nature08033. Epub 2009 May 17.


The mismatch repair system promotes DNA polymerase zeta-dependent translesion synthesis in yeast.

Lehner K, Jinks-Robertson S.

Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5749-54. doi: 10.1073/pnas.0812715106. Epub 2009 Mar 23.


Sequence divergence impedes crossover more than noncrossover events during mitotic gap repair in yeast.

Welz-Voegele C, Jinks-Robertson S.

Genetics. 2008 Jul;179(3):1251-62. doi: 10.1534/genetics.108.090233. Epub 2008 Jun 18.


The effect of sequence context on spontaneous Polzeta-dependent mutagenesis in Saccharomyces cerevisiae.

Abdulovic AL, Minesinger BK, Jinks-Robertson S.

Nucleic Acids Res. 2008 Apr;36(6):2082-93. doi: 10.1093/nar/gkn054. Epub 2008 Feb 14.


Role of proliferating cell nuclear antigen interactions in the mismatch repair-dependent processing of mitotic and meiotic recombination intermediates in yeast.

Stone JE, Ozbirn RG, Petes TD, Jinks-Robertson S.

Genetics. 2008 Mar;178(3):1221-36. doi: 10.1534/genetics.107.085415. Epub 2008 Feb 3.


Oligonucleotide transformation of yeast reveals mismatch repair complexes to be differentially active on DNA replication strands.

Kow YW, Bao G, Reeves JW, Jinks-Robertson S, Crouse GF.

Proc Natl Acad Sci U S A. 2007 Jul 3;104(27):11352-7. Epub 2007 Jun 25.


Identification of a strand-related bias in the PCNA-mediated bypass of spontaneous lesions by yeast Poleta.

Abdulovic AL, Minesinger BK, Jinks-Robertson S.

DNA Repair (Amst). 2007 Sep 1;6(9):1307-18. Epub 2007 Apr 17.


Transcription-associated mutagenesis in yeast is directly proportional to the level of gene expression and influenced by the direction of DNA replication.

Kim N, Abdulovic AL, Gealy R, Lippert MJ, Jinks-Robertson S.

DNA Repair (Amst). 2007 Sep 1;6(9):1285-96. Epub 2007 Mar 29.


Mutagenesis and the three R's in yeast.

Abdulovic A, Kim N, Jinks-Robertson S.

DNA Repair (Amst). 2006 Apr 8;5(4):409-21. Epub 2006 Jan 10. Review.


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