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Items: 1 to 50 of 60

1.

Corrigendum: Molecular mechanism of the RNA helicase DHX37 and its activation by UTP14A in ribosome biogenesis.

Boneberg FM, Brandmann T, Kobel L, van den Heuvel J, Bargsten K, Bammert L, Kutay U, Jinek M.

RNA. 2019 Nov;25(11):1576. doi: 10.1261/rna.072900.119. No abstract available.

2.

Mechanistic insights into mRNA 3'-end processing.

Kumar A, Clerici M, Muckenfuss LM, Passmore LA, Jinek M.

Curr Opin Struct Biol. 2019 Sep 6;59:143-150. doi: 10.1016/j.sbi.2019.08.001. [Epub ahead of print] Review.

3.

Introducing gene deletions by mouse zygote electroporation of Cas12a/Cpf1.

Dumeau CE, Monfort A, Kissling L, Swarts DC, Jinek M, Wutz A.

Transgenic Res. 2019 Sep 3. doi: 10.1007/s11248-019-00168-9. [Epub ahead of print]

PMID:
31482512
4.

DNA-guided DNA cleavage at moderate temperatures by Clostridium butyricum Argonaute.

Hegge JW, Swarts DC, Chandradoss SD, Cui TJ, Kneppers J, Jinek M, Joo C, van der Oost J.

Nucleic Acids Res. 2019 Jun 20;47(11):5809-5821. doi: 10.1093/nar/gkz306.

5.

Deciphering Off-Target Effects in CRISPR-Cas9 through Accelerated Molecular Dynamics.

Ricci CG, Chen JS, Miao Y, Jinek M, Doudna JA, McCammon JA, Palermo G.

ACS Cent Sci. 2019 Apr 24;5(4):651-662. doi: 10.1021/acscentsci.9b00020. Epub 2019 Mar 7.

6.

Molecular mechanism of the RNA helicase DHX37 and its activation by UTP14A in ribosome biogenesis.

Boneberg FM, Brandmann T, Kobel L, van den Heuvel J, Bargsten K, Bammert L, Kutay U, Jinek M.

RNA. 2019 Jun;25(6):685-701. doi: 10.1261/rna.069609.118. Epub 2019 Mar 25. Erratum in: RNA. 2019 Nov;25(11):1576.

7.

Preparation and electroporation of Cas12a/Cpf1-guide RNA complexes for introducing large gene deletions in mouse embryonic stem cells.

Kissling L, Monfort A, Swarts DC, Wutz A, Jinek M.

Methods Enzymol. 2019;616:241-263. doi: 10.1016/bs.mie.2018.10.028. Epub 2019 Jan 17.

PMID:
30691645
8.

In vitro Generation of CRISPR-Cas9 Complexes with Covalently Bound Repair Templates for Genome Editing in Mammalian Cells.

Savić N, Ringnalda FC, Berk C, Bargsten K, Hall J, Jinek M, Schwank G.

Bio Protoc. 2019 Jan 5;9(1). pii: e3136. doi: 10.21769/BioProtoc.3136.

9.

Mechanistic Insights into the cis- and trans-Acting DNase Activities of Cas12a.

Swarts DC, Jinek M.

Mol Cell. 2019 Feb 7;73(3):589-600.e4. doi: 10.1016/j.molcel.2018.11.021. Epub 2019 Jan 10.

PMID:
30639240
10.

Key role of the REC lobe during CRISPR-Cas9 activation by 'sensing', 'regulating', and 'locking' the catalytic HNH domain.

Palermo G, Chen JS, Ricci CG, Rivalta I, Jinek M, Batista VS, Doudna JA, McCammon JA.

Q Rev Biophys. 2018;51. pii: e91. doi: 10.1017/S0033583518000070. Epub 2018 Aug 3.

11.

Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor.

Kroupova A, Ivascu A, Reimão-Pinto MM, Ameres SL, Jinek M.

Nucleic Acids Res. 2019 Jan 25;47(2):1030-1042. doi: 10.1093/nar/gky1164.

12.

Human MARF1 is an endoribonuclease that interacts with the DCP1:2 decapping complex and degrades target mRNAs.

Nishimura T, Fakim H, Brandmann T, Youn JY, Gingras AC, Jinek M, Fabian MR.

Nucleic Acids Res. 2018 Dec 14;46(22):12008-12021. doi: 10.1093/nar/gky1011.

13.

Covalent linkage of the DNA repair template to the CRISPR-Cas9 nuclease enhances homology-directed repair.

Savic N, Ringnalda FC, Lindsay H, Berk C, Bargsten K, Li Y, Neri D, Robinson MD, Ciaudo C, Hall J, Jinek M, Schwank G.

Elife. 2018 May 29;7. pii: e33761. doi: 10.7554/eLife.33761.

14.

Cas9 versus Cas12a/Cpf1: Structure-function comparisons and implications for genome editing.

Swarts DC, Jinek M.

Wiley Interdiscip Rev RNA. 2018 May 22:e1481. doi: 10.1002/wrna.1481. [Epub ahead of print] Review.

PMID:
29790280
15.

Author Correction: Structural basis of AAUAAA polyadenylation signal recognition by the human CPSF complex.

Clerici M, Faini M, Muckenfuss LM, Aebersold R, Jinek M.

Nat Struct Mol Biol. 2018 Apr;25(4):355. doi: 10.1038/s41594-018-0044-6.

PMID:
29540792
16.

Molecular architecture of LSM14 interactions involved in the assembly of mRNA silencing complexes.

Brandmann T, Fakim H, Padamsi Z, Youn JY, Gingras AC, Fabian MR, Jinek M.

EMBO J. 2018 Apr 3;37(7). pii: e97869. doi: 10.15252/embj.201797869. Epub 2018 Mar 6.

17.

Structural basis of AAUAAA polyadenylation signal recognition by the human CPSF complex.

Clerici M, Faini M, Muckenfuss LM, Aebersold R, Jinek M.

Nat Struct Mol Biol. 2018 Feb;25(2):135-138. doi: 10.1038/s41594-017-0020-6. Epub 2018 Jan 22. Erratum in: Nat Struct Mol Biol. 2018 Mar 14;:.

PMID:
29358758
18.

Structural insights into the assembly and polyA signal recognition mechanism of the human CPSF complex.

Clerici M, Faini M, Aebersold R, Jinek M.

Elife. 2017 Dec 23;6. pii: e33111. doi: 10.7554/eLife.33111.

19.

Bacteriophage DNA glucosylation impairs target DNA binding by type I and II but not by type V CRISPR-Cas effector complexes.

Vlot M, Houkes J, Lochs SJA, Swarts DC, Zheng P, Kunne T, Mohanraju P, Anders C, Jinek M, van der Oost J, Dickman MJ, Brouns SJJ.

Nucleic Acids Res. 2018 Jan 25;46(2):873-885. doi: 10.1093/nar/gkx1264.

20.

Molecular architectures and mechanisms of Class 2 CRISPR-associated nucleases.

Garcia-Doval C, Jinek M.

Curr Opin Struct Biol. 2017 Dec;47:157-166. doi: 10.1016/j.sbi.2017.10.015. Epub 2017 Nov 3. Review.

PMID:
29107822
21.

Specialized Weaponry: How a Type III-A CRISPR-Cas System Excels at Combating Phages.

Niewoehner O, Jinek M.

Cell Host Microbe. 2017 Sep 13;22(3):258-259. doi: 10.1016/j.chom.2017.08.019.

22.

Protospacer Adjacent Motif-Induced Allostery Activates CRISPR-Cas9.

Palermo G, Ricci CG, Fernando A, Basak R, Jinek M, Rivalta I, Batista VS, McCammon JA.

J Am Chem Soc. 2017 Nov 15;139(45):16028-16031. doi: 10.1021/jacs.7b05313. Epub 2017 Aug 7.

23.

Type III CRISPR-Cas systems produce cyclic oligoadenylate second messengers.

Niewoehner O, Garcia-Doval C, Rostøl JT, Berk C, Schwede F, Bigler L, Hall J, Marraffini LA, Jinek M.

Nature. 2017 Aug 31;548(7669):543-548. doi: 10.1038/nature23467. Epub 2017 Jul 19.

PMID:
28722012
24.

CRISPR-Cas9 conformational activation as elucidated from enhanced molecular simulations.

Palermo G, Miao Y, Walker RC, Jinek M, McCammon JA.

Proc Natl Acad Sci U S A. 2017 Jul 11;114(28):7260-7265. doi: 10.1073/pnas.1707645114. Epub 2017 Jun 26. Erratum in: Proc Natl Acad Sci U S A. 2017 Oct 17;114(42):E8944.

25.

Structural Basis for Guide RNA Processing and Seed-Dependent DNA Targeting by CRISPR-Cas12a.

Swarts DC, van der Oost J, Jinek M.

Mol Cell. 2017 Apr 20;66(2):221-233.e4. doi: 10.1016/j.molcel.2017.03.016.

26.

Striking Plasticity of CRISPR-Cas9 and Key Role of Non-target DNA, as Revealed by Molecular Simulations.

Palermo G, Miao Y, Walker RC, Jinek M, McCammon JA.

ACS Cent Sci. 2016 Oct 26;2(10):756-763. Epub 2016 Sep 9.

27.

Molecular basis for cytoplasmic RNA surveillance by uridylation-triggered decay in Drosophila.

Reimão-Pinto MM, Manzenreither RA, Burkard TR, Sledz P, Jinek M, Mechtler K, Ameres SL.

EMBO J. 2016 Nov 15;35(22):2417-2434. Epub 2016 Oct 11.

28.

Structural insights into the molecular mechanism of the m(6)A writer complex.

Śledź P, Jinek M.

Elife. 2016 Sep 14;5. pii: e18434. doi: 10.7554/eLife.18434.

29.

CrispRVariants charts the mutation spectrum of genome engineering experiments.

Lindsay H, Burger A, Biyong B, Felker A, Hess C, Zaugg J, Chiavacci E, Anders C, Jinek M, Mosimann C, Robinson MD.

Nat Biotechnol. 2016 Jul 12;34(7):701-2. doi: 10.1038/nbt.3628. No abstract available.

PMID:
27404876
30.

Maximizing mutagenesis with solubilized CRISPR-Cas9 ribonucleoprotein complexes.

Burger A, Lindsay H, Felker A, Hess C, Anders C, Chiavacci E, Zaugg J, Weber LM, Catena R, Jinek M, Robinson MD, Mosimann C.

Development. 2016 Jun 1;143(11):2025-37. doi: 10.1242/dev.134809. Epub 2016 Apr 29.

31.

Structural Plasticity of PAM Recognition by Engineered Variants of the RNA-Guided Endonuclease Cas9.

Anders C, Bargsten K, Jinek M.

Mol Cell. 2016 Mar 17;61(6):895-902. doi: 10.1016/j.molcel.2016.02.020.

32.

Data-collection strategy for challenging native SAD phasing.

Olieric V, Weinert T, Finke AD, Anders C, Li D, Olieric N, Borca CN, Steinmetz MO, Caffrey M, Jinek M, Wang M.

Acta Crystallogr D Struct Biol. 2016 Mar;72(Pt 3):421-9. doi: 10.1107/S2059798315024110. Epub 2016 Mar 1.

33.

Structural basis for the endoribonuclease activity of the type III-A CRISPR-associated protein Csm6.

Niewoehner O, Jinek M.

RNA. 2016 Mar;22(3):318-29. doi: 10.1261/rna.054098.115. Epub 2016 Jan 13.

34.

An internal promoter underlies the difference in disease severity between N- and C-terminal truncation mutations of Titin in zebrafish.

Zou J, Tran D, Baalbaki M, Tang LF, Poon A, Pelonero A, Titus EW, Yuan C, Shi C, Patchava S, Halper E, Garg J, Movsesyan I, Yin C, Wu R, Wilsbacher LD, Liu J, Hager RL, Coughlin SR, Jinek M, Pullinger CR, Kane JP, Hart DO, Kwok PY, Deo RC.

Elife. 2015 Oct 16;4:e09406. doi: 10.7554/eLife.09406.

35.

In Vitro Reconstitution and Crystallization of Cas9 Endonuclease Bound to a Guide RNA and a DNA Target.

Anders C, Niewoehner O, Jinek M.

Methods Enzymol. 2015;558:515-537. doi: 10.1016/bs.mie.2015.02.008. Epub 2015 Mar 12.

36.

Biotechnology. A prudent path forward for genomic engineering and germline gene modification.

Baltimore D, Berg P, Botchan M, Carroll D, Charo RA, Church G, Corn JE, Daley GQ, Doudna JA, Fenner M, Greely HT, Jinek M, Martin GS, Penhoet E, Puck J, Sternberg SH, Weissman JS, Yamamoto KR.

Science. 2015 Apr 3;348(6230):36-8. doi: 10.1126/science.aab1028. Epub 2015 Mar 19. No abstract available.

37.

Crystal structure of the C-terminal 2',5'-phosphodiesterase domain of group A rotavirus protein VP3.

Brandmann T, Jinek M.

Proteins. 2015 May;83(5):997-1002. doi: 10.1002/prot.24794. Epub 2015 Mar 25.

38.

In vitro enzymology of Cas9.

Anders C, Jinek M.

Methods Enzymol. 2014;546:1-20. doi: 10.1016/B978-0-12-801185-0.00001-5.

39.

Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease.

Anders C, Niewoehner O, Duerst A, Jinek M.

Nature. 2014 Sep 25;513(7519):569-73. doi: 10.1038/nature13579. Epub 2014 Jul 27.

40.

Structures of Cas9 endonucleases reveal RNA-mediated conformational activation.

Jinek M, Jiang F, Taylor DW, Sternberg SH, Kaya E, Ma E, Anders C, Hauer M, Zhou K, Lin S, Kaplan M, Iavarone AT, Charpentier E, Nogales E, Doudna JA.

Science. 2014 Mar 14;343(6176):1247997. doi: 10.1126/science.1247997. Epub 2014 Feb 6.

41.

DNA interrogation by the CRISPR RNA-guided endonuclease Cas9.

Sternberg SH, Redding S, Jinek M, Greene EC, Doudna JA.

Nature. 2014 Mar 6;507(7490):62-7. doi: 10.1038/nature13011. Epub 2014 Jan 29.

42.

Evolution of CRISPR RNA recognition and processing by Cas6 endonucleases.

Niewoehner O, Jinek M, Doudna JA.

Nucleic Acids Res. 2014 Jan;42(2):1341-53. doi: 10.1093/nar/gkt922. Epub 2013 Oct 22.

43.

Structural mimicry in transcription regulation of human RNA polymerase II by the DNA helicase RECQL5.

Kassube SA, Jinek M, Fang J, Tsutakawa S, Nogales E.

Nat Struct Mol Biol. 2013 Jul;20(7):892-9. doi: 10.1038/nsmb.2596. Epub 2013 Jun 9.

44.

RNA-programmed genome editing in human cells.

Jinek M, East A, Cheng A, Lin S, Ma E, Doudna J.

Elife. 2013 Jan 29;2:e00471. doi: 10.7554/eLife.00471.

45.

A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.

Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E.

Science. 2012 Aug 17;337(6096):816-21. doi: 10.1126/science.1225829. Epub 2012 Jun 28.

46.

An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3.

Sashital DG, Jinek M, Doudna JA.

Nat Struct Mol Biol. 2011 Jun;18(6):680-7. doi: 10.1038/nsmb.2043. Epub 2011 May 15.

PMID:
21572442
47.

Coupled 5' nucleotide recognition and processivity in Xrn1-mediated mRNA decay.

Jinek M, Coyle SM, Doudna JA.

Mol Cell. 2011 Mar 4;41(5):600-8. doi: 10.1016/j.molcel.2011.02.004.

48.

Structural and biochemical studies of a fluoroacetyl-CoA-specific thioesterase reveal a molecular basis for fluorine selectivity.

Weeks AM, Coyle SM, Jinek M, Doudna JA, Chang MC.

Biochemistry. 2010 Nov 2;49(43):9269-79. doi: 10.1021/bi101102u.

49.

Sequence- and structure-specific RNA processing by a CRISPR endonuclease.

Haurwitz RE, Jinek M, Wiedenheft B, Zhou K, Doudna JA.

Science. 2010 Sep 10;329(5997):1355-8. doi: 10.1126/science.1192272.

50.

Use of RNA tertiary interaction modules for the crystallisation of the spliceosomal snRNP core domain.

Leung AK, Kambach C, Kondo Y, Kampmann M, Jinek M, Nagai K.

J Mol Biol. 2010 Sep 10;402(1):154-64. doi: 10.1016/j.jmb.2010.07.017. Epub 2010 Jul 17.

PMID:
20643141

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