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Items: 27

1.

Biochemical Characterization of CYP505D6, a Self-Sufficient Cytochrome P450 from the White-Rot Fungus Phanerochaete chrysosporium.

Sakai K, Matsuzaki F, Wise L, Sakai Y, Jindou S, Ichinose H, Takaya N, Kato M, Wariishi H, Shimizu M.

Appl Environ Microbiol. 2018 Oct 30;84(22). pii: e01091-18. doi: 10.1128/AEM.01091-18. Print 2018 Nov 15.

2.

Characterization of pH-tolerant and thermostable GH 134 β-1,4-mannanase SsGH134 possessing carbohydrate binding module 10 from Streptomyces sp. NRRL B-24484.

Sakai K, Kimoto S, Shinzawa Y, Minezawa M, Suzuki K, Jindou S, Kato M, Shimizu M.

J Biosci Bioeng. 2018 Mar;125(3):287-294. doi: 10.1016/j.jbiosc.2017.10.009. Epub 2017 Nov 16.

PMID:
29153955
3.

Complexity of the Ruminococcus flavefaciens FD-1 cellulosome reflects an expansion of family-related protein-protein interactions.

Israeli-Ruimy V, Bule P, Jindou S, Dassa B, Moraïs S, Borovok I, Barak Y, Slutzki M, Hamberg Y, Cardoso V, Alves VD, Najmudin S, White BA, Flint HJ, Gilbert HJ, Lamed R, Fontes CM, Bayer EA.

Sci Rep. 2017 Feb 10;7:42355. doi: 10.1038/srep42355.

4.

Biochemical characterization of thermostable β-1,4-mannanase belonging to the glycoside hydrolase family 134 from Aspergillus oryzae.

Sakai K, Mochizuki M, Yamada M, Shinzawa Y, Minezawa M, Kimoto S, Murata S, Kaneko Y, Ishihara S, Jindou S, Kobayashi T, Kato M, Shimizu M.

Appl Microbiol Biotechnol. 2017 Apr;101(8):3237-3245. doi: 10.1007/s00253-017-8107-x. Epub 2017 Jan 19.

PMID:
28105485
5.

Reassembly and co-crystallization of a family 9 processive endoglucanase from its component parts: structural and functional significance of the intermodular linker.

Petkun S, Rozman Grinberg I, Lamed R, Jindou S, Burstein T, Yaniv O, Shoham Y, Shimon LJ, Bayer EA, Frolow F.

PeerJ. 2015 Sep 15;3:e1126. doi: 10.7717/peerj.1126. eCollection 2015.

6.

Standalone cohesin as a molecular shuttle in cellulosome assembly.

Voronov-Goldman M, Yaniv O, Gul O, Yoffe H, Salama-Alber O, Slutzki M, Levy-Assaraf M, Jindou S, Shimon LJ, Borovok I, Bayer EA, Lamed R, Frolow F.

FEBS Lett. 2015 Jun 22;589(14):1569-76. doi: 10.1016/j.febslet.2015.04.013. Epub 2015 Apr 17.

7.

Engineered platform for bioethylene production by a cyanobacterium expressing a chimeric complex of plant enzymes.

Jindou S, Ito Y, Mito N, Uematsu K, Hosoda A, Tamura H.

ACS Synth Biol. 2014 Jul 18;3(7):487-96. doi: 10.1021/sb400197f. Epub 2014 Feb 24.

PMID:
24933350
8.

Structural characterization of a novel autonomous cohesin from Ruminococcus flavefaciens.

Voronov-Goldman M, Levy-Assaraf M, Yaniv O, Wisserman G, Jindou S, Borovok I, Bayer EA, Lamed R, Shimon LJ, Frolow F.

Acta Crystallogr F Struct Biol Commun. 2014 Apr;70(Pt 4):450-6. doi: 10.1107/S2053230X14004051. Epub 2014 Mar 25.

9.

Crystal structure of an uncommon cellulosome-related protein module from Ruminococcus flavefaciens that resembles papain-like cysteine peptidases.

Levy-Assaraf M, Voronov-Goldman M, Rozman Grinberg I, Weiserman G, Shimon LJ, Jindou S, Borovok I, White BA, Bayer EA, Lamed R, Frolow F.

PLoS One. 2013;8(2):e56138. doi: 10.1371/journal.pone.0056138. Epub 2013 Feb 14.

10.

A simple method for determining specificity of carbohydrate-binding modules for purified and crude insoluble polysaccharide substrates.

Yaniv O, Jindou S, Frolow F, Lamed R, Bayer EA.

Methods Mol Biol. 2012;908:101-7. doi: 10.1007/978-1-61779-956-3_10.

PMID:
22843393
11.

Cellulosomics, a gene-centric approach to investigating the intraspecific diversity and adaptation of Ruminococcus flavefaciens within the rumen.

Brulc JM, Yeoman CJ, Wilson MK, Berg Miller ME, Jeraldo P, Jindou S, Goldenfeld N, Flint HJ, Lamed R, Borovok I, Vodovnik M, Nelson KE, Bayer EA, White BA.

PLoS One. 2011;6(10):e25329. doi: 10.1371/journal.pone.0025329. Epub 2011 Oct 17.

12.

Analysis of cohesin-dockerin interactions using mutant dockerin proteins.

Sakka K, Sugihara Y, Jindou S, Sakka M, Inagaki M, Sakka K, Kimura T.

FEMS Microbiol Lett. 2011 Jan;314(1):75-80. doi: 10.1111/j.1574-6968.2010.02146.x. Epub 2010 Nov 8.

13.

Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1.

Rincon MT, Dassa B, Flint HJ, Travis AJ, Jindou S, Borovok I, Lamed R, Bayer EA, Henrissat B, Coutinho PM, Antonopoulos DA, Berg Miller ME, White BA.

PLoS One. 2010 Aug 30;5(8):e12476. doi: 10.1371/journal.pone.0012476.

14.

The unique set of putative membrane-associated anti-sigma factors in Clostridium thermocellum suggests a novel extracellular carbohydrate-sensing mechanism involved in gene regulation.

Kahel-Raifer H, Jindou S, Bahari L, Nataf Y, Shoham Y, Bayer EA, Borovok I, Lamed R.

FEMS Microbiol Lett. 2010 Jul 1;308(1):84-93. doi: 10.1111/j.1574-6968.2010.01997.x. Epub 2010 Apr 23.

15.

Structure of a family 3b' carbohydrate-binding module from the Cel9V glycoside hydrolase from Clostridium thermocellum: structural diversity and implications for carbohydrate binding.

Petkun S, Jindou S, Shimon LJ, Rosenheck S, Bayer EA, Lamed R, Frolow F.

Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):33-43. doi: 10.1107/S0907444909043030. Epub 2009 Dec 21.

PMID:
20057047
16.

Unusual binding properties of the dockerin module of Clostridium thermocellum endoglucanase CelJ (Cel9D-Cel44A).

Sakka K, Kishino Y, Sugihara Y, Jindou S, Sakka M, Inagaki M, Kimura T, Sakka K.

FEMS Microbiol Lett. 2009 Nov;300(2):249-55. doi: 10.1111/j.1574-6968.2009.01788.x. Epub 2009 Sep 10.

17.

Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1.

Berg Miller ME, Antonopoulos DA, Rincon MT, Band M, Bari A, Akraiko T, Hernandez A, Thimmapuram J, Henrissat B, Coutinho PM, Borovok I, Jindou S, Lamed R, Flint HJ, Bayer EA, White BA.

PLoS One. 2009 Aug 14;4(8):e6650. doi: 10.1371/journal.pone.0006650.

18.

Physical association of the catalytic and helper modules of a family-9 glycoside hydrolase is essential for activity.

Burstein T, Shulman M, Jindou S, Petkun S, Frolow F, Shoham Y, Bayer EA, Lamed R.

FEBS Lett. 2009 Mar 4;583(5):879-84. doi: 10.1016/j.febslet.2009.02.013. Epub 2009 Feb 12.

19.

The titanium binding protein of Rhodococcus ruber GIN1 (NCIMB 40340) is a cell-surface homolog of the cytosolic enzyme dihydrolipoamide dehydrogenase.

Siegmann A, Komarska A, Betzalel Y, Brudo I, Jindou S, Mor G, Fleminger G.

J Mol Recognit. 2009 Mar-Apr;22(2):138-45. doi: 10.1002/jmr.919.

PMID:
18956442
20.

Cell surface enzyme attachment is mediated by family 37 carbohydrate-binding modules, unique to Ruminococcus albus.

Ezer A, Matalon E, Jindou S, Borovok I, Atamna N, Yu Z, Morrison M, Bayer EA, Lamed R.

J Bacteriol. 2008 Dec;190(24):8220-2. doi: 10.1128/JB.00609-08. Epub 2008 Oct 17.

21.

Cellulosome gene cluster analysis for gauging the diversity of the ruminal cellulolytic bacterium Ruminococcus flavefaciens.

Jindou S, Brulc JM, Levy-Assaraf M, Rincon MT, Flint HJ, Berg ME, Wilson MK, White BA, Bayer EA, Lamed R, Borovok I.

FEMS Microbiol Lett. 2008 Aug;285(2):188-94. doi: 10.1111/j.1574-6968.2008.01234.x. Epub 2008 Jun 28.

22.

Crystallization and preliminary diffraction studies of CBM3b of cellobiohydrolase 9A from Clostridium thermocellum.

Jindou S, Petkun S, Shimon L, Bayer EA, Lamed R, Frolow F.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Dec 1;63(Pt 12):1044-7. Epub 2007 Nov 21.

23.

Conservation and divergence in cellulosome architecture between two strains of Ruminococcus flavefaciens.

Jindou S, Borovok I, Rincon MT, Flint HJ, Antonopoulos DA, Berg ME, White BA, Bayer EA, Lamed R.

J Bacteriol. 2006 Nov;188(22):7971-6. Epub 2006 Sep 22.

24.

Novel architecture of family-9 glycoside hydrolases identified in cellulosomal enzymes of Acetivibrio cellulolyticus and Clostridium thermocellum.

Jindou S, Xu Q, Kenig R, Shulman M, Shoham Y, Bayer EA, Lamed R.

FEMS Microbiol Lett. 2006 Jan;254(2):308-16.

25.

Interaction between a type-II dockerin domain and a type-II cohesin domain from Clostridium thermocellum cellulosome.

Jindou S, Kajino T, Inagaki M, Karita S, Beguin P, Kimura T, Sakka K, Ohmiya K.

Biosci Biotechnol Biochem. 2004 Apr;68(4):924-6.

26.

Cohesin-dockerin interactions within and between Clostridium josui and Clostridium thermocellum: binding selectivity between cognate dockerin and cohesin domains and species specificity.

Jindou S, Soda A, Karita S, Kajino T, Béguin P, Wu JH, Inagaki M, Kimura T, Sakka K, Ohmiya K.

J Biol Chem. 2004 Mar 12;279(11):9867-74. Epub 2003 Dec 19.

27.

alpha-Galactosidase Aga27A, an enzymatic component of the Clostridium josui cellulosome.

Jindou S, Karita S, Fujino E, Fujino T, Hayashi H, Kimura T, Sakka K, Ohmiya K.

J Bacteriol. 2002 Jan;184(2):600-4.

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