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Items: 1 to 50 of 92

1.

Spatial organization of RNA polymerase and its relationship with transcription in Escherichia coli.

Weng X, Bohrer CH, Bettridge K, Lagda AC, Cagliero C, Jin DJ, Xiao J.

Proc Natl Acad Sci U S A. 2019 Oct 1;116(40):20115-20123. doi: 10.1073/pnas.1903968116. Epub 2019 Sep 16.

PMID:
31527272
2.

Density of σ70 promoter-like sites in the intergenic regions dictates the redistribution of RNA polymerase during osmotic stress in Escherichia coli.

Sun Z, Cagliero C, Izard J, Chen Y, Zhou YN, Heinz WF, Schneider TD, Jin DJ.

Nucleic Acids Res. 2019 May 7;47(8):3970-3985. doi: 10.1093/nar/gkz159.

3.

Imaging of Transcription and Replication in the Bacterial Chromosome with Multicolor Three-Dimensional Superresolution Structured Illumination Microscopy.

Martin CM, Cagliero C, Sun Z, Chen, Jin DJ.

Methods Mol Biol. 2018;1837:117-129. doi: 10.1007/978-1-4939-8675-0_7.

PMID:
30109608
4.

Extrachromosomal Nucleolus-Like Compartmentalization by a Plasmid-Borne Ribosomal RNA Operon and Its Role in Nucleoid Compaction.

Mata Martin C, Sun Z, Zhou YN, Jin DJ.

Front Microbiol. 2018 Jun 5;9:1115. doi: 10.3389/fmicb.2018.01115. eCollection 2018.

5.

Identification and Characterization of a Bacterial Homolog of Chloride Intracellular Channel (CLIC) Protein.

Gururaja Rao S, Ponnalagu D, Sukur S, Singh H, Sanghvi S, Mei Y, Jin DJ, Singh H.

Sci Rep. 2017 Aug 17;7(1):8500. doi: 10.1038/s41598-017-08742-z.

6.

Deacetylation of topoisomerase I is an important physiological function of E. coli CobB.

Zhou Q, Zhou YN, Jin DJ, Tse-Dinh YC.

Nucleic Acids Res. 2017 May 19;45(9):5349-5358. doi: 10.1093/nar/gkx250.

7.

A Cre Transcription Fidelity Reporter Identifies GreA as a Major RNA Proofreading Factor in Escherichia coli.

Bubunenko MG, Court CB, Rattray AJ, Gotte DR, Kireeva ML, Irizarry-Caro JA, Li X, Jin DJ, Court DL, Strathern JN, Kashlev M.

Genetics. 2017 May;206(1):179-187. doi: 10.1534/genetics.116.198960. Epub 2017 Mar 24.

8.

Nucleolus-like compartmentalization of the transcription machinery in fast-growing bacterial cells.

Jin DJ, Mata Martin C, Sun Z, Cagliero C, Zhou YN.

Crit Rev Biochem Mol Biol. 2017 Feb;52(1):96-106. doi: 10.1080/10409238.2016.1269717. Epub 2016 Dec 23. Review.

9.

Two new eunicellin diterpenoids from the East China Sea gorgonian Muricella sp.

Zhao C, Wang J, Jin DJ, Duan HQ, Xing GS, Tang SA.

J Asian Nat Prod Res. 2016 Sep;18(9):848-53. doi: 10.1080/10286020.2016.1164143. Epub 2016 Mar 23.

PMID:
27004724
10.

Effect of high-pressure homogenization preparation on mean globule size and large-diameter tail of oil-in-water injectable emulsions.

Peng J, Dong WJ, Li L, Xu JM, Jin DJ, Xia XJ, Liu YL.

J Food Drug Anal. 2015 Dec;23(4):828-835. doi: 10.1016/j.jfda.2015.04.004. Epub 2015 May 19.

11.

Allosteric Activation of Bacterial Swi2/Snf2 (Switch/Sucrose Non-fermentable) Protein RapA by RNA Polymerase: BIOCHEMICAL AND STRUCTURAL STUDIES.

Kakar S, Fang X, Lubkowska L, Zhou YN, Shaw GX, Wang YX, Jin DJ, Kashlev M, Ji X.

J Biol Chem. 2015 Sep 25;290(39):23656-69. doi: 10.1074/jbc.M114.618801. Epub 2015 Aug 13.

12.

The dynamic nature and territory of transcriptional machinery in the bacterial chromosome.

Jin DJ, Cagliero C, Martin CM, Izard J, Zhou YN.

Front Microbiol. 2015 May 21;6:497. doi: 10.3389/fmicb.2015.00497. eCollection 2015. Review.

13.

Cyr61/CCN1 overexpression induces epithelial-mesenchymal transition leading to laryngeal tumor invasion and metastasis and poor prognosis.

Liu Y, Zhou YD, Xiao YL, Li MH, Wang Y, Kan X, Li QY, Lu JG, Jin DJ.

Asian Pac J Cancer Prev. 2015;16(7):2659-64.

14.

Three new polyunsaturated lipids from a Guangxi marine sponge Haliclona sp.

Zhao C, Gu Q, Xu WG, Xing GS, Jin DJ, Xu R, Li H, Duan HQ, Zhou J, Tang SA.

J Asian Nat Prod Res. 2015;17(2):114-9. doi: 10.1080/10286020.2014.985769. Epub 2014 Dec 1.

PMID:
25434418
15.
16.

Jaspiferins C-F, four new isomalabaricane-type triterpenoids from the South China Sea sponge Jaspisstellifera.

Jin DJ, Tang SA, Xing GS, Zhao WJ, Zhao C, Duan HQ, Lin WH.

J Asian Nat Prod Res. 2014;16(5):427-33. doi: 10.1080/10286020.2014.911288.

PMID:
24824553
17.

Bacteriophage λ N protein inhibits transcription slippage by Escherichia coli RNA polymerase.

Parks AR, Court C, Lubkowska L, Jin DJ, Kashlev M, Court DL.

Nucleic Acids Res. 2014 May;42(9):5823-9. doi: 10.1093/nar/gku203. Epub 2014 Apr 7.

18.
19.
20.

Role of RNA polymerase and transcription in the organization of the bacterial nucleoid.

Jin DJ, Cagliero C, Zhou YN.

Chem Rev. 2013 Nov 13;113(11):8662-82. doi: 10.1021/cr4001429. Epub 2013 Aug 13. Review. No abstract available.

21.

KAI1/CD82 and MRP1/CD9 serve as markers of infiltration, metastasis, and prognosis in laryngeal squamous cell carcinomas.

Zhang BH, Liu W, Li L, Lu JG, Sun YN, Jin DJ, Xu XY.

Asian Pac J Cancer Prev. 2013;14(6):3521-6.

22.

Genome conformation capture reveals that the Escherichia coli chromosome is organized by replication and transcription.

Cagliero C, Grand RS, Jones MB, Jin DJ, O'Sullivan JM.

Nucleic Acids Res. 2013 Jul;41(12):6058-71. doi: 10.1093/nar/gkt325. Epub 2013 Apr 30.

23.

Isolation and characterization of RNA polymerase rpoB mutations that alter transcription slippage during elongation in Escherichia coli.

Zhou YN, Lubkowska L, Hui M, Court C, Chen S, Court DL, Strathern J, Jin DJ, Kashlev M.

J Biol Chem. 2013 Jan 25;288(4):2700-10. doi: 10.1074/jbc.M112.429464. Epub 2012 Dec 5.

24.

The fidelity of transcription: RPB1 (RPO21) mutations that increase transcriptional slippage in S. cerevisiae.

Strathern J, Malagon F, Irvin J, Gotte D, Shafer B, Kireeva M, Lubkowska L, Jin DJ, Kashlev M.

J Biol Chem. 2013 Jan 25;288(4):2689-99. doi: 10.1074/jbc.M112.429506. Epub 2012 Dec 5.

25.

Dissociation and re-association of RNA polymerase with DNA during osmotic stress response in Escherichia coli.

Cagliero C, Jin DJ.

Nucleic Acids Res. 2013 Jan 7;41(1):315-26. doi: 10.1093/nar/gks988. Epub 2012 Oct 23.

26.
27.

Isolation and characterization of transcription fidelity mutants.

Strathern JN, Jin DJ, Court DL, Kashlev M.

Biochim Biophys Acta. 2012 Jul;1819(7):694-9. doi: 10.1016/j.bbagrm.2012.02.005. Epub 2012 Feb 16. Review.

PMID:
22366339
28.

Microarray gene analysis of Toll-like receptor signaling elements in chronic rhinosinusitis with nasal polyps.

Zhao CY, Wang X, Liu M, Jin DJ.

Int Arch Allergy Immunol. 2011;156(3):297-304. doi: 10.1159/000323767. Epub 2011 Jun 29.

PMID:
21720175
29.

Growth rate regulation in Escherichia coli.

Jin DJ, Cagliero C, Zhou YN.

FEMS Microbiol Rev. 2012 Mar;36(2):269-87. doi: 10.1111/j.1574-6976.2011.00279.x. Epub 2011 Jun 3. Review.

30.

Structure and function of RapA: a bacterial Swi2/Snf2 protein required for RNA polymerase recycling in transcription.

Jin DJ, Zhou YN, Shaw G, Ji X.

Biochim Biophys Acta. 2011 Sep;1809(9):470-5. doi: 10.1016/j.bbagrm.2011.03.003. Epub 2011 Mar 16. Review.

31.

Formulation, characterization and hypersensitivity evaluation of an intravenous emulsion loaded with a paclitaxel-cholesterol complex.

Xia XJ, Guo RF, Liu YL, Zhang PX, Zhou CP, Jin DJ, Wang RY.

Chem Pharm Bull (Tokyo). 2011;59(3):321-6.

32.

Polyphosphate binds to the principal sigma factor of RNA polymerase during starvation response in Helicobacter pylori.

Yang ZX, Zhou YN, Yang Y, Jin DJ.

Mol Microbiol. 2010 Aug;77(3):618-27. doi: 10.1111/j.1365-2958.2010.07233.x. Epub 2010 Jun 11.

33.

Active transcription of rRNA operons condenses the nucleoid in Escherichia coli: examining the effect of transcription on nucleoid structure in the absence of transertion.

Cabrera JE, Cagliero C, Quan S, Squires CL, Jin DJ.

J Bacteriol. 2009 Jul;191(13):4180-5. doi: 10.1128/JB.01707-08. Epub 2009 Apr 24.

34.

A role for the parafascicular thalamic nucleus in the development of morphine dependence and withdrawal.

Xiao H, Zhai DX, Yan BB, Wang JH, Xu WS, Wang GY, Bai SS, Kong QF, Sun B, Wang DD, Jin DJ, Li HL.

Brain Res. 2009 May 19;1271:74-82. doi: 10.1016/j.brainres.2009.02.084. Epub 2009 Mar 28.

PMID:
19332040
35.

Regulation of cell growth during serum starvation and bacterial survival in macrophages by the bifunctional enzyme SpoT in Helicobacter pylori.

Zhou YN, Coleman WG Jr, Yang Z, Yang Y, Hodgson N, Chen F, Jin DJ.

J Bacteriol. 2008 Dec;190(24):8025-32. doi: 10.1128/JB.01134-08. Epub 2008 Oct 3.

36.

Kimura disease: review of the literature.

Sun QF, Xu DZ, Pan SH, Ding JG, Xue ZQ, Miao CS, Cao GJ, Jin DJ.

Intern Med J. 2008 Aug;38(8):668-72. doi: 10.1111/j.1445-5994.2008.01711.x. Review.

PMID:
18808562
37.

Structure of RapA, a Swi2/Snf2 protein that recycles RNA polymerase during transcription.

Shaw G, Gan J, Zhou YN, Zhi H, Subburaman P, Zhang R, Joachimiak A, Jin DJ, Ji X.

Structure. 2008 Sep 10;16(9):1417-27. doi: 10.1016/j.str.2008.06.012.

38.

Role of the alpha v-integrin subunit in cell proliferation, apoptosis and tumor metastasis of laryngeal and hypopharyngeal squamous cell carcinomas: a clinical and in vitro investigation.

Lu JG, Sun YN, Wang C, Jin DJ, Liu M.

Eur Arch Otorhinolaryngol. 2009 Jan;266(1):89-96. doi: 10.1007/s00405-008-0675-z. Epub 2008 Apr 22.

PMID:
18427826
39.

[Expression of alpha-v integrin subunit in the laryngeal and hypopharyngeal squamous cell carcinomas and its relationship with tumor angiogenesis].

Lu JG, Xiao YL, Kan X, Jin DJ.

Zhonghua Er Bi Yan Hou Tou Jing Wai Ke Za Zhi. 2008 Jan;43(1):46-50. Chinese.

PMID:
18357713
40.

Transcription profiling of the stringent response in Escherichia coli.

Durfee T, Hansen AM, Zhi H, Blattner FR, Jin DJ.

J Bacteriol. 2008 Feb;190(3):1084-96. Epub 2007 Nov 26.

41.

Toward a hyperstructure taxonomy.

Norris V, den Blaauwen T, Doi RH, Harshey RM, Janniere L, Jiménez-Sánchez A, Jin DJ, Levin PA, Mileykovskaya E, Minsky A, Misevic G, Ripoll C, Saier M Jr, Skarstad K, Thellier M.

Annu Rev Microbiol. 2007;61:309-29. Review.

PMID:
17896876
42.

Transcription activation by the DNA-binding domain of the AraC family protein RhaS in the absence of its effector-binding domain.

Wickstrum JR, Skredenske JM, Kolin A, Jin DJ, Fang J, Egan SM.

J Bacteriol. 2007 Jul;189(14):4984-93. Epub 2007 May 18.

43.

Functional taxonomy of bacterial hyperstructures.

Norris V, den Blaauwen T, Cabin-Flaman A, Doi RH, Harshey R, Janniere L, Jimenez-Sanchez A, Jin DJ, Levin PA, Mileykovskaya E, Minsky A, Saier M Jr, Skarstad K.

Microbiol Mol Biol Rev. 2007 Mar;71(1):230-53. Review.

44.

[Cervical lymph node metastasis of malignant fibrous histiocytoma of the hypopharynx].

Wang GP, Jin DJ, Xiao H.

Zhonghua Er Bi Yan Hou Tou Jing Wai Ke Za Zhi. 2006 Oct;41(10):792-3. Chinese. No abstract available.

PMID:
17190436
45.
46.

Phenolic glycosides from leaves of Hopiciopsis lobata.

He QQ, Liu MS, Jin DJ, Kong LY.

J Asian Nat Prod Res. 2006 Jun;8(4):373-7.

PMID:
16864450
48.

[Experimental investigation of effects of adenovirus transduced tissue factor pathway inhibitor-2 gene on growth of laryngeal squamous carcinoma].

Sun YN, Li Y, Jin DJ, Yao HC, Wang ZL, Li P.

Zhonghua Er Bi Yan Hou Tou Jing Wai Ke Za Zhi. 2005 Jun;40(6):402-5. Chinese.

PMID:
16144329
49.

SspA is required for acid resistance in stationary phase by downregulation of H-NS in Escherichia coli.

Hansen AM, Qiu Y, Yeh N, Blattner FR, Durfee T, Jin DJ.

Mol Microbiol. 2005 May;56(3):719-34.

50.

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