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Items: 16

1.

Systematic Identification of Host Cell Regulators of Legionella pneumophila Pathogenesis Using a Genome-wide CRISPR Screen.

Jeng EE, Bhadkamkar V, Ibe NU, Gause H, Jiang L, Chan J, Jian R, Jimenez-Morales D, Stevenson E, Krogan NJ, Swaney DL, Snyder MP, Mukherjee S, Bassik MC.

Cell Host Microbe. 2019 Oct 9;26(4):551-563.e6. doi: 10.1016/j.chom.2019.08.017. Epub 2019 Sep 17.

PMID:
31540829
2.

Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function.

Orr AL, Kim C, Jimenez-Morales D, Newton BW, Johnson JR, Krogan NJ, Swaney DL, Mahley RW.

J Alzheimers Dis. 2019;68(3):991-1011. doi: 10.3233/JAD-181184.

3.

Proteasome lid bridges mitochondrial stress with Cdc53/Cullin1 NEDDylation status.

Bramasole L, Sinha A, Gurevich S, Radzinski M, Klein Y, Panat N, Gefen E, Rinaldi T, Jimenez-Morales D, Johnson J, Krogan NJ, Reis N, Reichmann D, Glickman MH, Pick E.

Redox Biol. 2019 Jan;20:533-543. doi: 10.1016/j.redox.2018.11.010. Epub 2018 Nov 17.

4.

The Cellular NMD Pathway Restricts Zika Virus Infection and Is Targeted by the Viral Capsid Protein.

Fontaine KA, Leon KE, Khalid MM, Tomar S, Jimenez-Morales D, Dunlap M, Kaye JA, Shah PS, Finkbeiner S, Krogan NJ, Ott M.

MBio. 2018 Nov 6;9(6). pii: e02126-18. doi: 10.1128/mBio.02126-18.

5.

Influenza virus infection causes global RNAPII termination defects.

Zhao N, Sebastiano V, Moshkina N, Mena N, Hultquist J, Jimenez-Morales D, Ma Y, Rialdi A, Albrecht R, Fenouil R, Sánchez-Aparicio MT, Ayllon J, Ravisankar S, Haddad B, Ho JSY, Low D, Jin J, Yurchenko V, Prinjha RK, Tarakhovsky A, Squatrito M, Pinto D, Allette K, Byun M, Smith ML, Sebra R, Guccione E, Tumpey T, Krogan N, Greenbaum B, van Bakel H, García-Sastre A, Marazzi I.

Nat Struct Mol Biol. 2018 Sep;25(9):885-893. doi: 10.1038/s41594-018-0124-7. Epub 2018 Sep 3.

PMID:
30177761
6.

Quantitative Yeast Genetic Interaction Profiling of Bacterial Effector Proteins Uncovers a Role for the Human Retromer in Salmonella Infection.

Patrick KL, Wojcechowskyj JA, Bell SL, Riba MN, Jing T, Talmage S, Xu P, Cabello AL, Xu J, Shales M, Jimenez-Morales D, Ficht TA, de Figueiredo P, Samuel JE, Li P, Krogan NJ, Watson RO.

Cell Syst. 2018 Sep 26;7(3):323-338.e6. doi: 10.1016/j.cels.2018.06.010. Epub 2018 Aug 1.

7.

Sympathetic inputs regulate adaptive thermogenesis in brown adipose tissue through cAMP-Salt inducible kinase axis.

Paulo E, Wu D, Wang Y, Zhang Y, Wu Y, Swaney DL, Soucheray M, Jimenez-Morales D, Chawla A, Krogan NJ, Wang B.

Sci Rep. 2018 Jul 20;8(1):11001. doi: 10.1038/s41598-018-29333-6.

8.

Proteome Imbalance of Mitochondrial Electron Transport Chain in Brown Adipocytes Leads to Metabolic Benefits.

Masand R, Paulo E, Wu D, Wang Y, Swaney DL, Jimenez-Morales D, Krogan NJ, Wang B.

Cell Metab. 2018 Mar 6;27(3):616-629.e4. doi: 10.1016/j.cmet.2018.01.018.

9.

The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity.

Rialdi A, Hultquist J, Jimenez-Morales D, Peralta Z, Campisi L, Fenouil R, Moshkina N, Wang ZZ, Laffleur B, Kaake RM, McGregor MJ, Haas K, Pefanis E, Albrecht RA, Pache L, Chanda S, Jen J, Ochando J, Byun M, Basu U, García-Sastre A, Krogan N, van Bakel H, Marazzi I.

Cell. 2017 May 4;169(4):679-692.e14. doi: 10.1016/j.cell.2017.04.021.

10.

dictyBase 2015: Expanding data and annotations in a new software environment.

Basu S, Fey P, Jimenez-Morales D, Dodson RJ, Chisholm RL.

Genesis. 2015 Aug;53(8):523-534. doi: 10.1002/dvg.22867. Epub 2015 Jul 8.

11.

Lysine carboxylation: unveiling a spontaneous post-translational modification.

Jimenez-Morales D, Adamian L, Shi D, Liang J.

Acta Crystallogr D Biol Crystallogr. 2014 Jan;70(Pt 1):48-57. doi: 10.1107/S139900471302364X. Epub 2013 Dec 24.

12.

Ionizable side chains at catalytic active sites of enzymes.

Jimenez-Morales D, Liang J, Eisenberg B.

Eur Biophys J. 2012 May;41(5):449-60. doi: 10.1007/s00249-012-0798-4. Epub 2012 Apr 7.

13.

Engineered oligomerization state of OmpF protein through computational design decouples oligomer dissociation from unfolding.

Naveed H, Jimenez-Morales D, Tian J, Pasupuleti V, Kenney LJ, Liang J.

J Mol Biol. 2012 May 25;419(1-2):89-101. doi: 10.1016/j.jmb.2012.02.043. Epub 2012 Mar 3.

14.

Pattern of amino acid substitutions in transmembrane domains of β-barrel membrane proteins for detecting remote homologs in bacteria and mitochondria.

Jimenez-Morales D, Liang J.

PLoS One. 2011;6(11):e26400. doi: 10.1371/journal.pone.0026400. Epub 2011 Nov 1.

15.

Computational studies of membrane proteins: models and predictions for biological understanding.

Liang J, Naveed H, Jimenez-Morales D, Adamian L, Lin M.

Biochim Biophys Acta. 2012 Apr;1818(4):927-41. doi: 10.1016/j.bbamem.2011.09.026. Epub 2011 Oct 12. Review.

16.

Detecting remote homologues using scoring matrices calculated from the estimation of amino acid substitution rates of beta-barrel membrane proteins.

Jimenez-Morales D, Adamian L, Liang J.

Conf Proc IEEE Eng Med Biol Soc. 2008;2008:1347-50. doi: 10.1109/IEMBS.2008.4649414.

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