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Items: 32

1.

NPR1 mediates a novel regulatory pathway in cold acclimation by interacting with HSFA1 factors.

Olate E, Jiménez-Gómez JM, Holuigue L, Salinas J.

Nat Plants. 2018 Oct;4(10):811-823. doi: 10.1038/s41477-018-0254-2. Epub 2018 Sep 24.

PMID:
30250280
2.

Allele-specific expression and genetic determinants of transcriptomic variations in response to mild water deficit in tomato.

Albert E, Duboscq R, Latreille M, Santoni S, Beukers M, Bouchet JP, Bitton F, Gricourt J, Poncet C, Gautier V, Jiménez-Gómez JM, Rigaill G, Causse M.

Plant J. 2018 Nov;96(3):635-650. doi: 10.1111/tpj.14057. Epub 2018 Sep 19.

PMID:
30079488
3.

Mutations in EID1 and LNK2 caused light-conditional clock deceleration during tomato domestication.

Müller NA, Zhang L, Koornneef M, Jiménez-Gómez JM.

Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):7135-7140. doi: 10.1073/pnas.1801862115. Epub 2018 May 22.

PMID:
29789384
4.

Profiling the onset of somatic embryogenesis in Arabidopsis.

Magnani E, Jiménez-Gómez JM, Soubigou-Taconnat L, Lepiniec L, Fiume E.

BMC Genomics. 2017 Dec 29;18(1):998. doi: 10.1186/s12864-017-4391-1.

5.

Construction of a High-Density Genetic Map from RNA-Seq Data for an Arabidopsis Bay-0 × Shahdara RIL Population.

Serin EAR, Snoek LB, Nijveen H, Willems LAJ, Jiménez-Gómez JM, Hilhorst HWM, Ligterink W.

Front Genet. 2017 Dec 5;8:201. doi: 10.3389/fgene.2017.00201. eCollection 2017.

6.

Prominent alterations of wild barley leaf transcriptome in response to individual and combined drought acclimation and heat shock conditions.

Ashoub A, Müller N, Jiménez-Gómez JM, Brüggemann W.

Physiol Plant. 2018 May;163(1):18-29. doi: 10.1111/ppl.12667. Epub 2017 Dec 20.

PMID:
29111595
7.

Multi-Omics of Tomato Glandular Trichomes Reveals Distinct Features of Central Carbon Metabolism Supporting High Productivity of Specialized Metabolites.

Balcke GU, Bennewitz S, Bergau N, Athmer B, Henning A, Majovsky P, Jiménez-Gómez JM, Hoehenwarter W, Tissier A.

Plant Cell. 2017 May;29(5):960-983. doi: 10.1105/tpc.17.00060. Epub 2017 Apr 13.

8.

A footprint of desiccation tolerance in the genome of Xerophyta viscosa.

Costa MD, Artur MA, Maia J, Jonkheer E, Derks MF, Nijveen H, Williams B, Mundree SG, Jiménez-Gómez JM, Hesselink T, Schijlen EG, Ligterink W, Oliver MJ, Farrant JM, Hilhorst HW.

Nat Plants. 2017 Mar 27;3:17038. doi: 10.1038/nplants.2017.38.

PMID:
28346448
9.

New Strategies and Tools in Quantitative Genetics: How to Go from the Phenotype to the Genotype.

Bazakos C, Hanemian M, Trontin C, Jiménez-Gómez JM, Loudet O.

Annu Rev Plant Biol. 2017 Apr 28;68:435-455. doi: 10.1146/annurev-arplant-042916-040820. Epub 2017 Feb 6. Review.

PMID:
28226236
10.

Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato.

Soyk S, Müller NA, Park SJ, Schmalenbach I, Jiang K, Hayama R, Zhang L, Van Eck J, Jiménez-Gómez JM, Lippman ZB.

Nat Genet. 2017 Jan;49(1):162-168. doi: 10.1038/ng.3733. Epub 2016 Dec 5.

PMID:
27918538
11.

CLAUSA Is a MYB Transcription Factor That Promotes Leaf Differentiation by Attenuating Cytokinin Signaling.

Bar M, Israeli A, Levy M, Ben Gera H, Jiménez-Gómez JM, Kouril S, Tarkowski P, Ori N.

Plant Cell. 2016 Jul;28(7):1602-15. doi: 10.1105/tpc.16.00211. Epub 2016 Jul 6.

12.

Targeted and Untargeted Approaches Unravel Novel Candidate Genes and Diagnostic SNPs for Quantitative Resistance of the Potato (Solanum tuberosum L.) to Phytophthora infestans Causing the Late Blight Disease.

Mosquera T, Alvarez MF, Jiménez-Gómez JM, Muktar MS, Paulo MJ, Steinemann S, Li J, Draffehn A, Hofmann A, Lübeck J, Strahwald J, Tacke E, Hofferbert HR, Walkemeier B, Gebhardt C.

PLoS One. 2016 Jun 9;11(6):e0156254. doi: 10.1371/journal.pone.0156254. eCollection 2016.

13.

Alternative splicing enhances transcriptome complexity in desiccating seeds.

Srinivasan A, Jiménez-Gómez JM, Fornara F, Soppe WJ, Brambilla V.

J Integr Plant Biol. 2016 Dec;58(12):947-958. doi: 10.1111/jipb.12482. Epub 2016 Jul 20.

14.

Analysis of Circadian Leaf Movements.

Müller NA, Jiménez-Gómez JM.

Methods Mol Biol. 2016;1398:71-9. doi: 10.1007/978-1-4939-3356-3_7.

PMID:
26867616
15.

The LSM1-7 Complex Differentially Regulates Arabidopsis Tolerance to Abiotic Stress Conditions by Promoting Selective mRNA Decapping.

Perea-Resa C, Carrasco-López C, Catalá R, Turečková V, Novak O, Zhang W, Sieburth L, Jiménez-Gómez JM, Salinas J.

Plant Cell. 2016 Feb;28(2):505-20. doi: 10.1105/tpc.15.00867. Epub 2016 Jan 13.

16.

Domestication selected for deceleration of the circadian clock in cultivated tomato.

Müller NA, Wijnen CL, Srinivasan A, Ryngajllo M, Ofner I, Lin T, Ranjan A, West D, Maloof JN, Sinha NR, Huang S, Zamir D, Jiménez-Gómez JM.

Nat Genet. 2016 Jan;48(1):89-93. doi: 10.1038/ng.3447. Epub 2015 Nov 16.

PMID:
26569124
17.

The relationship between flowering time and growth responses to drought in the Arabidopsis Landsberg erecta x Antwerp-1 population.

Schmalenbach I, Zhang L, Reymond M, Jiménez-Gómez JM.

Front Plant Sci. 2014 Nov 11;5:609. doi: 10.3389/fpls.2014.00609. eCollection 2014.

18.

Nonsense-mediated mRNA decay modulates immune receptor levels to regulate plant antibacterial defense.

Gloggnitzer J, Akimcheva S, Srinivasan A, Kusenda B, Riehs N, Stampfl H, Bautor J, Dekrout B, Jonak C, Jiménez-Gómez JM, Parker JE, Riha K.

Cell Host Microbe. 2014 Sep 10;16(3):376-90. doi: 10.1016/j.chom.2014.08.010.

19.

Functional analysis of the Landsberg erecta allele of FRIGIDA.

Schmalenbach I, Zhang L, Ryngajllo M, Jiménez-Gómez JM.

BMC Plant Biol. 2014 Aug 13;14:218. doi: 10.1186/s12870-014-0218-2.

20.

The genome of the stress-tolerant wild tomato species Solanum pennellii.

Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, Ofner I, Vrebalov J, Xu Y, Osorio S, Aflitos SA, Schijlen E, Jiménez-Goméz JM, Ryngajllo M, Kimura S, Kumar R, Koenig D, Headland LR, Maloof JN, Sinha N, van Ham RC, Lankhorst RK, Mao L, Vogel A, Arsova B, Panstruga R, Fei Z, Rose JK, Zamir D, Carrari F, Giovannoni JJ, Weigel D, Usadel B, Fernie AR.

Nat Genet. 2014 Sep;46(9):1034-8. doi: 10.1038/ng.3046. Epub 2014 Jul 27.

PMID:
25064008
21.

Network types and their application in natural variation studies in plants.

Jiménez-Gómez JM.

Curr Opin Plant Biol. 2014 Apr;18:80-6. doi: 10.1016/j.pbi.2014.02.010. Epub 2014 Mar 15. Review.

PMID:
24632305
22.

A quantitative genetic basis for leaf morphology in a set of precisely defined tomato introgression lines.

Chitwood DH, Kumar R, Headland LR, Ranjan A, Covington MF, Ichihashi Y, Fulop D, Jiménez-Gómez JM, Peng J, Maloof JN, Sinha NR.

Plant Cell. 2013 Jul;25(7):2465-81. doi: 10.1105/tpc.113.112391. Epub 2013 Jul 19.

23.

Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato.

Koenig D, Jiménez-Gómez JM, Kimura S, Fulop D, Chitwood DH, Headland LR, Kumar R, Covington MF, Devisetty UK, Tat AV, Tohge T, Bolger A, Schneeberger K, Ossowski S, Lanz C, Xiong G, Taylor-Teeples M, Brady SM, Pauly M, Weigel D, Usadel B, Fernie AR, Peng J, Sinha NR, Maloof JN.

Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):E2655-62. doi: 10.1073/pnas.1309606110. Epub 2013 Jun 26.

24.

Fine genetic mapping of RXopJ4, a bacterial spot disease resistance locus from Solanum pennellii LA716.

Sharlach M, Dahlbeck D, Liu L, Chiu J, Jiménez-Gómez JM, Kimura S, Koenig D, Maloof JN, Sinha N, Minsavage GV, Jones JB, Stall RE, Staskawicz BJ.

Theor Appl Genet. 2013 Mar;126(3):601-9. doi: 10.1007/s00122-012-2004-6. Epub 2012 Nov 2.

PMID:
23117718
25.

Native environment modulates leaf size and response to simulated foliar shade across wild tomato species.

Chitwood DH, Headland LR, Filiault DL, Kumar R, Jiménez-Gómez JM, Schrager AV, Park DS, Peng J, Sinha NR, Maloof JN.

PLoS One. 2012;7(1):e29570. doi: 10.1371/journal.pone.0029570. Epub 2012 Jan 12.

26.

Genomic analysis of QTLs and genes altering natural variation in stochastic noise.

Jimenez-Gomez JM, Corwin JA, Joseph B, Maloof JN, Kliebenstein DJ.

PLoS Genet. 2011 Sep;7(9):e1002295. doi: 10.1371/journal.pgen.1002295. Epub 2011 Sep 29.

27.

Network quantitative trait loci mapping of circadian clock outputs identifies metabolic pathway-to-clock linkages in Arabidopsis.

Kerwin RE, Jimenez-Gomez JM, Fulop D, Harmer SL, Maloof JN, Kliebenstein DJ.

Plant Cell. 2011 Feb;23(2):471-85. doi: 10.1105/tpc.110.082065. Epub 2011 Feb 22.

28.

Next generation quantitative genetics in plants.

Jiménez-Gómez JM.

Front Plant Sci. 2011 Nov 15;2:77. doi: 10.3389/fpls.2011.00077. eCollection 2011.

29.

Network analysis identifies ELF3 as a QTL for the shade avoidance response in Arabidopsis.

Jiménez-Gómez JM, Wallace AD, Maloof JN.

PLoS Genet. 2010 Sep 9;6(9):e1001100. doi: 10.1371/journal.pgen.1001100.

30.

Sequence diversity in three tomato species: SNPs, markers, and molecular evolution.

Jiménez-Gómez JM, Maloof JN.

BMC Plant Biol. 2009 Jul 3;9:85. doi: 10.1186/1471-2229-9-85.

31.

Plant research accelerates along the (bio)informatics superhighway: symposium on plant sensing, response and adaptation to the environment.

Jiménez-Gómez JM, Maloof JN.

EMBO Rep. 2009 Jun;10(6):568-72. doi: 10.1038/embor.2009.116. Epub 2009 May 22. No abstract available.

32.

Quantitative genetic analysis of flowering time in tomato.

Jiménez-Gómez JM, Alonso-Blanco C, Borja A, Anastasio G, Angosto T, Lozano R, Martínez-Zapater JM.

Genome. 2007 Mar;50(3):303-15.

PMID:
17502904

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