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Items: 29

1.

Misconnecting the dots: altered mitochondrial protein-protein interactions and their role in neurodegenerative disorders.

Zilocchi M, Moutaoufik MT, Jessulat M, Phanse S, Aly KA, Babu M.

Expert Rev Proteomics. 2020 Feb;17(2):119-136. doi: 10.1080/14789450.2020.1723419. Epub 2020 Feb 6.

PMID:
31986926
2.

Rewiring of the Human Mitochondrial Interactome during Neuronal Reprogramming Reveals Regulators of the Respirasome and Neurogenesis.

Moutaoufik MT, Malty R, Amin S, Zhang Q, Phanse S, Gagarinova A, Zilocchi M, Hoell L, Minic Z, Gagarinova M, Aoki H, Stockwell J, Jessulat M, Goebels F, Broderick K, Scott NE, Vlasblom J, Musso G, Prasad B, Lamantea E, Garavaglia B, Rajput A, Murayama K, Okazaki Y, Foster LJ, Bader GD, Cayabyab FS, Babu M.

iScience. 2019 Sep 27;19:1114-1132. doi: 10.1016/j.isci.2019.08.057. Epub 2019 Sep 4.

3.

A Tag-Based Affinity Purification Mass Spectrometry Workflow for Systematic Isolation of the Human Mitochondrial Protein Complexes.

Wu Z, Malty R, Moutaoufik MT, Zhang Q, Jessulat M, Babu M.

Adv Exp Med Biol. 2019;1158:83-100. doi: 10.1007/978-981-13-8367-0_6.

PMID:
31452137
4.

Identification and Functional Testing of Novel Interacting Protein Partners for the Stress Sensors Wsc1p and Mid2p of Saccharomyces cerevisiae.

Santiago-Cartagena E, González-Crespo S, Vélez V, Martínez N, Snider J, Jessulat M, Aoki H, Minic Z, Akamine P, Mejías I, Pérez LM, Rymond BC, Babu M, Stagljar I, Rodríguez-Medina JR.

G3 (Bethesda). 2019 Apr 9;9(4):1085-1102. doi: 10.1534/g3.118.200985.

5.

In Silico Engineering of Synthetic Binding Proteins from Random Amino Acid Sequences.

Burnside D, Schoenrock A, Moteshareie H, Hooshyar M, Basra P, Hajikarimlou M, Dick K, Barnes B, Kazmirchuk T, Jessulat M, Pitre S, Samanfar B, Babu M, Green JR, Wong A, Dehne F, Biggar KK, Golshani A.

iScience. 2019 Jan 25;11:375-387. doi: 10.1016/j.isci.2018.11.038. Epub 2018 Dec 4.

6.

A Map of Human Mitochondrial Protein Interactions Linked to Neurodegeneration Reveals New Mechanisms of Redox Homeostasis and NF-κB Signaling.

Malty RH, Aoki H, Kumar A, Phanse S, Amin S, Zhang Q, Minic Z, Goebels F, Musso G, Wu Z, Abou-Tok H, Meyer M, Deineko V, Kassir S, Sidhu V, Jessulat M, Scott NE, Xiong X, Vlasblom J, Prasad B, Foster LJ, Alberio T, Garavaglia B, Yu H, Bader GD, Nakamura K, Parkinson J, Babu M.

Cell Syst. 2017 Dec 27;5(6):564-577.e12. doi: 10.1016/j.cels.2017.10.010. Epub 2017 Nov 8.

7.

Uncharacterized ORF HUR1 influences the efficiency of non-homologous end-joining repair in Saccharomyces cerevisiae.

Omidi K, Jessulat M, Hooshyar M, Burnside D, Schoenrock A, Kazmirchuk T, Hajikarimlou M, Daniel M, Moteshareie H, Bhojoo U, Sanders M, Ramotar D, Dehne F, Samanfar B, Babu M, Golshani A.

Gene. 2018 Jan 10;639:128-136. doi: 10.1016/j.gene.2017.10.003. Epub 2017 Oct 5.

PMID:
28987344
8.

Novel Interactome of Saccharomyces cerevisiae Myosin Type II Identified by a Modified Integrated Membrane Yeast Two-Hybrid (iMYTH) Screen.

Santiago E, Akamine P, Snider J, Wong V, Jessulat M, Deineko V, Gagarinova A, Aoki H, Minic Z, Phanse S, San Antonio A, Cubano LA, Rymond BC, Babu M, Stagljar I, Rodriguez-Medina JR.

G3 (Bethesda). 2016 May 3;6(5):1469-74. doi: 10.1534/g3.115.026609.

9.

Spindle Checkpoint Factors Bub1 and Bub2 Promote DNA Double-Strand Break Repair by Nonhomologous End Joining.

Jessulat M, Malty RH, Nguyen-Tran DH, Deineko V, Aoki H, Vlasblom J, Omidi K, Jin K, Minic Z, Hooshyar M, Burnside D, Samanfar B, Phanse S, Freywald T, Prasad B, Zhang Z, Vizeacoumar F, Krogan NJ, Freywald A, Golshani A, Babu M.

Mol Cell Biol. 2015 Jul;35(14):2448-63. doi: 10.1128/MCB.00007-15. Epub 2015 May 11.

10.

A Comprehensive Membrane Interactome Mapping of Sho1p Reveals Fps1p as a Novel Key Player in the Regulation of the HOG Pathway in S. cerevisiae.

Lam MH, Snider J, Rehal M, Wong V, Aboualizadeh F, Drecun L, Wong O, Jubran B, Li M, Ali M, Jessulat M, Deineko V, Miller R, Lee Me, Park HO, Davidson A, Babu M, Stagljar I.

J Mol Biol. 2015 Jun 5;427(11):2088-103. doi: 10.1016/j.jmb.2015.01.016. Epub 2015 Jan 30.

11.

Rab5-family guanine nucleotide exchange factors bind retromer and promote its recruitment to endosomes.

Bean BD, Davey M, Snider J, Jessulat M, Deineko V, Tinney M, Stagljar I, Babu M, Conibear E.

Mol Biol Cell. 2015 Mar 15;26(6):1119-28. doi: 10.1091/mbc.E14-08-1281. Epub 2015 Jan 21. Erratum in: Mol Biol Cell. 2015 Apr 1;26(7):1411.

12.

Yeast mitochondrial protein-protein interactions reveal diverse complexes and disease-relevant functional relationships.

Jin K, Musso G, Vlasblom J, Jessulat M, Deineko V, Negroni J, Mosca R, Malty R, Nguyen-Tran DH, Aoki H, Minic Z, Freywald T, Phanse S, Xiang Q, Freywald A, Aloy P, Zhang Z, Babu M.

J Proteome Res. 2015 Feb 6;14(2):1220-37. doi: 10.1021/pr501148q. Epub 2015 Jan 20.

PMID:
25546499
13.

Mitochondrial targets for pharmacological intervention in human disease.

Malty RH, Jessulat M, Jin K, Musso G, Vlasblom J, Phanse S, Zhang Z, Babu M.

J Proteome Res. 2015 Jan 2;14(1):5-21. doi: 10.1021/pr500813f. Epub 2014 Dec 12. Review.

14.

A global investigation of gene deletion strains that affect premature stop codon bypass in yeast, Saccharomyces cerevisiae.

Samanfar B, Tan le H, Shostak K, Chalabian F, Wu Z, Alamgir M, Sunba N, Burnside D, Omidi K, Hooshyar M, Galván Márquez I, Jessulat M, Smith ML, Babu M, Azizi A, Golshani A.

Mol Biosyst. 2014 Apr;10(4):916-24. doi: 10.1039/c3mb70501c. Epub 2014 Feb 18.

PMID:
24535059
15.

Phosphatase complex Pph3/Psy2 is involved in regulation of efficient non-homologous end-joining pathway in the yeast Saccharomyces cerevisiae.

Omidi K, Hooshyar M, Jessulat M, Samanfar B, Sanders M, Burnside D, Pitre S, Schoenrock A, Xu J, Babu M, Golshani A.

PLoS One. 2014 Jan 31;9(1):e87248. doi: 10.1371/journal.pone.0087248. eCollection 2014.

16.

Mapping the functional yeast ABC transporter interactome.

Snider J, Hanif A, Lee ME, Jin K, Yu AR, Graham C, Chuk M, Damjanovic D, Wierzbicka M, Tang P, Balderes D, Wong V, Jessulat M, Darowski KD, San Luis BJ, Shevelev I, Sturley SL, Boone C, Greenblatt JF, Zhang Z, Paumi CM, Babu M, Park HO, Michaelis S, Stagljar I.

Nat Chem Biol. 2013 Sep;9(9):565-72. doi: 10.1038/nchembio.1293. Epub 2013 Jul 7.

17.

Recent advances in protein-protein interaction prediction: experimental and computational methods.

Jessulat M, Pitre S, Gui Y, Hooshyar M, Omidi K, Samanfar B, Tan le H, Alamgir M, Green J, Dehne F, Golshani A.

Expert Opin Drug Discov. 2011 Sep;6(9):921-35. doi: 10.1517/17460441.2011.603722. Epub 2011 Jul 29.

PMID:
22646215
18.

Short Co-occurring Polypeptide Regions Can Predict Global Protein Interaction Maps.

Pitre S, Hooshyar M, Schoenrock A, Samanfar B, Jessulat M, Green JR, Dehne F, Golshani A.

Sci Rep. 2012;2:239. doi: 10.1038/srep00239. Epub 2012 Jan 30.

19.

Ribosome-dependent ATPase interacts with conserved membrane protein in Escherichia coli to modulate protein synthesis and oxidative phosphorylation.

Babu M, Aoki H, Chowdhury WQ, Gagarinova A, Graham C, Phanse S, Laliberte B, Sunba N, Jessulat M, Golshani A, Emili A, Greenblatt JF, Ganoza MC.

PLoS One. 2011 Apr 27;6(4):e18510. doi: 10.1371/journal.pone.0018510.

20.

Chemical-genetic profile analysis of five inhibitory compounds in yeast.

Alamgir M, Erukova V, Jessulat M, Azizi A, Golshani A.

BMC Chem Biol. 2010 Aug 6;10:6. doi: 10.1186/1472-6769-10-6.

21.

Disruption of fungal cell wall by antifungal Echinacea extracts.

Mir-Rashed N, Cruz I, Jessulat M, Dumontier M, Chesnais C, Ng J, Amiguet VT, Golshani A, Arnason JT, Smith ML.

Med Mycol. 2010 Nov;48(7):949-58. doi: 10.3109/13693781003767584.

PMID:
20429770
22.

In vivo investigation of protein-protein interactions for helicases using tandem affinity purification.

Jessulat M, Buist T, Alamgir M, Hooshyar M, Xu J, Aoki H, Ganoza MC, Butland G, Golshani A.

Methods Mol Biol. 2010;587:99-111. doi: 10.1007/978-1-60327-355-8_7.

PMID:
20225144
23.

Chemical-genetic profile analysis in yeast suggests that a previously uncharacterized open reading frame, YBR261C, affects protein synthesis.

Alamgir M, Eroukova V, Jessulat M, Xu J, Golshani A.

BMC Genomics. 2008 Dec 3;9:583. doi: 10.1186/1471-2164-9-583.

24.

Global investigation of protein-protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences.

Pitre S, North C, Alamgir M, Jessulat M, Chan A, Luo X, Green JR, Dumontier M, Dehne F, Golshani A.

Nucleic Acids Res. 2008 Aug;36(13):4286-94. doi: 10.1093/nar/gkn390. Epub 2008 Jun 27.

25.

Interacting proteins Rtt109 and Vps75 affect the efficiency of non-homologous end-joining in Saccharomyces cerevisiae.

Jessulat M, Alamgir M, Salsali H, Greenblatt J, Xu J, Golshani A.

Arch Biochem Biophys. 2008 Jan 15;469(2):157-64. Epub 2007 Nov 9.

PMID:
18036332
26.

Antifungal and antioxidant activities of the phytomedicine pipsissewa, Chimaphila umbellata.

Galván IJ, Mir-Rashed N, Jessulat M, Atanya M, Golshani A, Durst T, Petit P, Amiguet VT, Boekhout T, Summerbell R, Cruz I, Arnason JT, Smith ML.

Phytochemistry. 2008 Feb;69(3):738-46. Epub 2007 Oct 22.

PMID:
17950387
27.

Colony size measurement of the yeast gene deletion strains for functional genomics.

Memarian N, Jessulat M, Alirezaie J, Mir-Rashed N, Xu J, Zareie M, Smith M, Golshani A.

BMC Bioinformatics. 2007 Apr 4;8:117.

28.

Investigating the in vivo activity of the DeaD protein using protein-protein interactions and the translational activity of structured chloramphenicol acetyltransferase mRNAs.

Butland G, Krogan NJ, Xu J, Yang WH, Aoki H, Li JS, Krogan N, Menendez J, Cagney G, Kiani GC, Jessulat MG, Datta N, Ivanov I, Abouhaidar MG, Emili A, Greenblatt J, Ganoza MC, Golshani A.

J Cell Biochem. 2007 Feb 15;100(3):642-52.

PMID:
16983699
29.

PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs.

Pitre S, Dehne F, Chan A, Cheetham J, Duong A, Emili A, Gebbia M, Greenblatt J, Jessulat M, Krogan N, Luo X, Golshani A.

BMC Bioinformatics. 2006 Jul 27;7:365.

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