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Changes in the expression of genes encoding type IV pili-associated proteins are seen when Clostridium perfringens is grown in liquid or on surfaces.

Soncini SR, Hartman AH, Gallagher TM, Camper GJ, Jensen RV, Melville SB.

BMC Genomics. 2020 Jan 14;21(1):45. doi: 10.1186/s12864-020-6453-z.


Impact of hyperglycemia on myocardial ischemia-reperfusion susceptibility and ischemic preconditioning in hearts from rats with type 2 diabetes.

Kristiansen SB, Pælestik KB, Johnsen J, Jespersen NR, Pryds K, Hjortbak MV, Jensen RV, Bøtker HE.

Cardiovasc Diabetol. 2019 May 31;18(1):66. doi: 10.1186/s12933-019-0872-7.


Identification of soil bacteria capable of utilizing a corn ethanol fermentation byproduct.

Packard H, Taylor ZW, Williams SL, Guimarães PI, Toth J, Jensen RV, Senger RS, Kuhn DD, Stevens AM.

PLoS One. 2019 Mar 8;14(3):e0212685. doi: 10.1371/journal.pone.0212685. eCollection 2019.


The Role of O-GlcNAcylation for Protection against Ischemia-Reperfusion Injury.

Jensen RV, Andreadou I, Hausenloy DJ, Bøtker HE.

Int J Mol Sci. 2019 Jan 18;20(2). pii: E404. doi: 10.3390/ijms20020404. Review.


Differential expression patterns of housekeeping genes increase diagnostic and prognostic value in lung cancer.

Chang YC, Ding Y, Dong L, Zhu LJ, Jensen RV, Hsiao LL.

PeerJ. 2018 May 9;6:e4719. doi: 10.7717/peerj.4719. eCollection 2018.


The Skin Microbiome of the Neotropical Frog Craugastor fitzingeri: Inferring Potential Bacterial-Host-Pathogen Interactions From Metagenomic Data.

Rebollar EA, Gutiérrez-Preciado A, Noecker C, Eng A, Hughey MC, Medina D, Walke JB, Borenstein E, Jensen RV, Belden LK, Harris RN.

Front Microbiol. 2018 Mar 20;9:466. doi: 10.3389/fmicb.2018.00466. eCollection 2018.


Discovery of Pantoea stewartii ssp. stewartii genes important for survival in corn xylem through a Tn-Seq analysis.

Duong DA, Jensen RV, Stevens AM.

Mol Plant Pathol. 2018 Feb 26. doi: 10.1111/mpp.12669. [Epub ahead of print]


Influence of diabetes mellitus duration on the efficacy of ischemic preconditioning in a Zucker diabetic fatty rat model.

Hjortbak MV, Hjort J, Povlsen JA, Jensen RV, Støttrup NB, Laursen MR, Jespersen NR, Løfgren B, Bøtker HE.

PLoS One. 2018 Feb 23;13(2):e0192981. doi: 10.1371/journal.pone.0192981. eCollection 2018.


FastViromeExplorer: a pipeline for virus and phage identification and abundance profiling in metagenomics data.

Tithi SS, Aylward FO, Jensen RV, Zhang L.

PeerJ. 2018 Jan 12;6:e4227. doi: 10.7717/peerj.4227. eCollection 2018.


Proteomic Analysis Shows Constitutive Secretion of MIF and p53-associated Activity of COX-2-/- Lung Fibroblasts.

Dave M, Islam ABMMK, Jensen RV, Rostagno A, Ghiso J, Amin AR.

Genomics Proteomics Bioinformatics. 2017 Dec;15(6):339-351. doi: 10.1016/j.gpb.2017.03.005. Epub 2017 Dec 13.


Effects of hypoglycemia on myocardial susceptibility to ischemia-reperfusion injury and preconditioning in hearts from rats with and without type 2 diabetes.

Pælestik KB, Jespersen NR, Jensen RV, Johnsen J, Bøtker HE, Kristiansen SB.

Cardiovasc Diabetol. 2017 Nov 9;16(1):148. doi: 10.1186/s12933-017-0628-1.


Mechanisms for Differential Protein Production in Toxin-Antitoxin Systems.

Deter HS, Jensen RV, Mather WH, Butzin NC.

Toxins (Basel). 2017 Jul 4;9(7). pii: E211. doi: 10.3390/toxins9070211.


Dominance-function relationships in the amphibian skin microbiome.

Walke JB, Becker MH, Hughey MC, Swartwout MC, Jensen RV, Belden LK.

Environ Microbiol. 2017 Aug;19(8):3387-3397. doi: 10.1111/1462-2920.13850. Epub 2017 Jul 26.


Prostacyclins have no direct inotropic effect on isolated atrial strips from the normal and pressure-overloaded human right heart.

Holmboe S, Andersen A, Jensen RV, Kimose HH, Ilkjær LB, Shen L, Clapp LH, Nielsen-Kudsk JE.

Pulm Circ. 2017 Apr-Jun;7(2):339-347. doi: 10.1177/2045893217691532. Epub 2017 May 30.


Complete Genome Assembly of Pantoea stewartii subsp. stewartii DC283, a Corn Pathogen.

Duong DA, Stevens AM, Jensen RV.

Genome Announc. 2017 Jun 1;5(22). pii: e00435-17. doi: 10.1128/genomeA.00435-17.


Analysis of the in planta transcriptome expressed by the corn pathogen Pantoea stewartii subsp. stewartii via RNA-Seq.

Packard H, Kernell Burke A, Jensen RV, Stevens AM.

PeerJ. 2017 Apr 27;5:e3237. doi: 10.7717/peerj.3237. eCollection 2017.


Candidate Gene Sequence Analyses toward Identifying -Type Resistance to.

Redekar NR, Clevinger EM, Laskar MA, Biyashev RM, Ashfield T, Jensen RV, Jeong SC, Tolin SA, Saghai Maroof MA.

Plant Genome. 2016 Jul;9(2). doi: 10.3835/plantgenome2015.09.0088.


Genomic, Lipidomic and Metabolomic Analysis of Cyclooxygenase-null Cells: Eicosanoid Storm, Cross Talk, and Compensation by COX-1.

Islam AB, Dave M, Amin S, Jensen RV, Amin AR.

Genomics Proteomics Bioinformatics. 2016 Apr;14(2):81-93. doi: 10.1016/j.gpb.2014.09.005. Epub 2016 Mar 21.


Analyzing the Transcriptomes of Two Quorum-Sensing Controlled Transcription Factors, RcsA and LrhA, Important for Pantoea stewartii Virulence.

Kernell Burke A, Duong DA, Jensen RV, Stevens AM.

PLoS One. 2015 Dec 23;10(12):e0145358. doi: 10.1371/journal.pone.0145358. eCollection 2015.


Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines.

Redekar NR, Biyashev RM, Jensen RV, Helm RF, Grabau EA, Maroof MA.

BMC Genomics. 2015 Dec 18;16:1074. doi: 10.1186/s12864-015-2283-9.


Metabolic and genomic analysis elucidates strain-level variation in Microbacterium spp. isolated from chromate contaminated sediment.

Henson MW, Santo Domingo JW, Kourtev PS, Jensen RV, Dunn JA, Learman DR.

PeerJ. 2015 Nov 10;3:e1395. doi: 10.7717/peerj.1395. eCollection 2015.


Panamanian frog species host unique skin bacterial communities.

Belden LK, Hughey MC, Rebollar EA, Umile TP, Loftus SC, Burzynski EA, Minbiole KP, House LL, Jensen RV, Becker MH, Walke JB, Medina D, Ibáñez R, Harris RN.

Front Microbiol. 2015 Oct 27;6:1171. doi: 10.3389/fmicb.2015.01171. eCollection 2015.


Characterization of the hypothalamic transcriptome in response to food deprivation reveals global changes in long noncoding RNA, and cell cycle response genes.

Jiang H, Modise T, Helm R, Jensen RV, Good DJ.

Genes Nutr. 2015 Nov;10(6):48. doi: 10.1007/s12263-015-0496-9. Epub 2015 Oct 16.


Rescuing chemotaxis of the anticancer agent Salmonella enterica serovar Typhimurium VNP20009.

Broadway KM, Denson EA, Jensen RV, Scharf BE.

J Biotechnol. 2015 Oct 10;211:117-20. doi: 10.1016/j.jbiotec.2015.07.010. Epub 2015 Jul 19.


Most of the Dominant Members of Amphibian Skin Bacterial Communities Can Be Readily Cultured.

Walke JB, Becker MH, Hughey MC, Swartwout MC, Jensen RV, Belden LK.

Appl Environ Microbiol. 2015 Oct;81(19):6589-600. doi: 10.1128/AEM.01486-15. Epub 2015 Jul 10.


OpaR controls a network of downstream transcription factors in Vibrio parahaemolyticus BB22OP.

Kernell Burke A, Guthrie LT, Modise T, Cormier G, Jensen RV, McCarter LL, Stevens AM.

PLoS One. 2015 Apr 22;10(4):e0121863. doi: 10.1371/journal.pone.0121863. eCollection 2015.


Complete genome sequence of Salmonella enterica serovar Typhimurium VNP20009, a strain engineered for tumor targeting.

Broadway KM, Modise T, Jensen RV, Scharf BE.

J Biotechnol. 2014 Dec 20;192 Pt A:177-8. doi: 10.1016/j.jbiotec.2014.07.006. Epub 2014 Jul 18.


Transcriptome-based analysis of the Pantoea stewartii quorum-sensing regulon and identification of EsaR direct targets.

Ramachandran R, Burke AK, Cormier G, Jensen RV, Stevens AM.

Appl Environ Microbiol. 2014 Sep;80(18):5790-800. doi: 10.1128/AEM.01489-14. Epub 2014 Jul 11.


Amphibian skin may select for rare environmental microbes.

Walke JB, Becker MH, Loftus SC, House LL, Cormier G, Jensen RV, Belden LK.

ISME J. 2014 Nov;8(11):2207-17. doi: 10.1038/ismej.2014.77. Epub 2014 May 23.


Hypermotility in Clostridium perfringens strain SM101 is due to spontaneous mutations in genes linked to cell division.

Liu H, McCord KD, Howarth J, Popham DL, Jensen RV, Melville SB.

J Bacteriol. 2014 Jul;196(13):2405-12. doi: 10.1128/JB.01614-14. Epub 2014 Apr 18.


19-core MCF transmission system using EDFA with shared core pumping coupled via free-space optics.

Sakaguchi J, Klaus W, Puttnam BJ, Mendinueta JM, Awaji Y, Wada N, Tsuchida Y, Maeda K, Tadakuma M, Imamura K, Sugizaki R, Kobayashi T, Tottori Y, Watanabe M, Jensen RV.

Opt Express. 2014 Jan 13;22(1):90-5. doi: 10.1364/OE.22.000090.


Sequential binary gene ratio tests define a novel molecular diagnostic strategy for malignant pleural mesothelioma.

De Rienzo A, Richards WG, Yeap BY, Coleman MH, Sugarbaker PE, Chirieac LR, Wang YE, Quackenbush J, Jensen RV, Bueno R.

Clin Cancer Res. 2013 May 1;19(9):2493-502. doi: 10.1158/1078-0432.CCR-12-2117. Epub 2013 Mar 14.


Complete Genome Sequence of Prepandemic Vibrio parahaemolyticus BB22OP.

Jensen RV, Depasquale SM, Harbolick EA, Hong T, Kernell AL, Kruchko DH, Modise T, Smith CE, McCarter LL, Stevens AM.

Genome Announc. 2013 Jan;1(1). pii: e00002-12. doi: 10.1128/genomeA.00002-12. Epub 2013 Feb 21.


Increased neck muscle activity and impaired balance among females with whiplash-related chronic neck pain: a cross-sectional study.

Juul-Kristensen B, Clausen B, Ris I, Jensen RV, Steffensen RF, Chreiteh SS, Jørgensen MB, Søgaard K.

J Rehabil Med. 2013 Apr;45(4):376-84. doi: 10.2340/16501977-1120.


Influence of aromatase absence on the gene expression and histology of the mouse meibomian gland.

Darabad RR, Suzuki T, Richards SM, Jensen RV, Jakobiec FA, Zakka FR, Liu S, Sullivan DA.

Invest Ophthalmol Vis Sci. 2013 Feb 5;54(2):987-98. doi: 10.1167/iovs.12-10992.


Impact of O-GlcNAc on cardioprotection by remote ischaemic preconditioning in non-diabetic and diabetic patients.

Jensen RV, Zachara NE, Nielsen PH, Kimose HH, Kristiansen SB, Bøtker HE.

Cardiovasc Res. 2013 Feb 1;97(2):369-78. doi: 10.1093/cvr/cvs337. Epub 2012 Dec 1.


Release of a humoral circulating cardioprotective factor by remote ischemic preconditioning is dependent on preserved neural pathways in diabetic patients.

Jensen RV, Støttrup NB, Kristiansen SB, Bøtker HE.

Basic Res Cardiol. 2012 Sep;107(5):285. doi: 10.1007/s00395-012-0285-1. Epub 2012 Jul 22.


Comparative genome analysis of the high pathogenicity Salmonella Typhimurium strain UK-1.

Luo Y, Kong Q, Yang J, Mitra A, Golden G, Wanda SY, Roland KL, Jensen RV, Ernst PB, Curtiss R 3rd.

PLoS One. 2012;7(7):e40645. doi: 10.1371/journal.pone.0040645. Epub 2012 Jul 6.


Genomic comparison between a virulent type A1 strain of Francisella tularensis and its attenuated O-antigen mutant.

Modise T, Ryder C, Mane SP, Bandara AB, Jensen RV, Inzana TJ.

J Bacteriol. 2012 May;194(10):2775-6. doi: 10.1128/JB.00152-12.


Exercise-induced cardioprotection is mediated by a bloodborne, transferable factor.

Michelsen MM, Støttrup NB, Schmidt MR, Løfgren B, Jensen RV, Tropak M, St-Michel EJ, Redington AN, Bøtker HE.

Basic Res Cardiol. 2012 May;107(3):260. doi: 10.1007/s00395-012-0260-x. Epub 2012 Mar 18.


Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons.

Shepherd ML, Swecker WS Jr, Jensen RV, Ponder MA.

FEMS Microbiol Lett. 2012 Jan;326(1):62-8. doi: 10.1111/j.1574-6968.2011.02434.x. Epub 2011 Nov 2.


Quasiparticle electronic and optical properties of the Si-Sn system.

Jensen RV, Pedersen TG, Larsen AN.

J Phys Condens Matter. 2011 Aug 31;23(34):345501. doi: 10.1088/0953-8984/23/34/345501.


RahU: an inducible and functionally pleiotropic protein in Pseudomonas aeruginosa modulates innate immunity and inflammation in host cells.

Rao J, Elliott MR, Leitinger N, Jensen RV, Goldberg JB, Amin AR.

Cell Immunol. 2011;270(2):103-13. doi: 10.1016/j.cellimm.2011.05.012. Epub 2011 May 24.


Complete genome sequence of the universal killer Salmonella enterica Serovar Typhimurium UK-1 (ATCC 68169).

Luo Y, Kong Q, Yang J, Golden G, Wanda SY, Jensen RV, Ernst PB, Curtiss R 3rd.

J Bacteriol. 2011 Aug;193(15):4035-6. doi: 10.1128/JB.05224-11. Epub 2011 May 27.


Drop-on-demand single cell isolation and total RNA analysis.

Moon S, Kim YG, Dong L, Lombardi M, Haeggstrom E, Jensen RV, Hsiao LL, Demirci U.

PLoS One. 2011 Mar 11;6(3):e17455. doi: 10.1371/journal.pone.0017455.


Changes in gene expression and cellular architecture in an ovarian cancer progression model.

Creekmore AL, Silkworth WT, Cimini D, Jensen RV, Roberts PC, Schmelz EM.

PLoS One. 2011 Mar 3;6(3):e17676. doi: 10.1371/journal.pone.0017676.


miR-99 family of MicroRNAs suppresses the expression of prostate-specific antigen and prostate cancer cell proliferation.

Sun D, Lee YS, Malhotra A, Kim HK, Matecic M, Evans C, Jensen RV, Moskaluk CA, Dutta A.

Cancer Res. 2011 Feb 15;71(4):1313-24. doi: 10.1158/0008-5472.CAN-10-1031. Epub 2011 Jan 6.


The genome of woodland strawberry (Fragaria vesca).

Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman TL, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW Jr, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Lopez Girona E, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM.

Nat Genet. 2011 Feb;43(2):109-16. doi: 10.1038/ng.740. Epub 2010 Dec 26.


Fine-needle aspiration biopsies for gene expression ratio-based diagnostic and prognostic tests in malignant pleural mesothelioma.

De Rienzo A, Dong L, Yeap BY, Jensen RV, Richards WG, Gordon GJ, Sugarbaker DJ, Bueno R.

Clin Cancer Res. 2011 Jan 15;17(2):310-6. doi: 10.1158/1078-0432.CCR-10-0806. Epub 2010 Nov 18.


The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.

Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, Su Z, Chu TM, Goodsaid FM, Pusztai L, Shaughnessy JD Jr, Oberthuer A, Thomas RS, Paules RS, Fielden M, Barlogie B, Chen W, Du P, Fischer M, Furlanello C, Gallas BD, Ge X, Megherbi DB, Symmans WF, Wang MD, Zhang J, Bitter H, Brors B, Bushel PR, Bylesjo M, Chen M, Cheng J, Cheng J, Chou J, Davison TS, Delorenzi M, Deng Y, Devanarayan V, Dix DJ, Dopazo J, Dorff KC, Elloumi F, Fan J, Fan S, Fan X, Fang H, Gonzaludo N, Hess KR, Hong H, Huan J, Irizarry RA, Judson R, Juraeva D, Lababidi S, Lambert CG, Li L, Li Y, Li Z, Lin SM, Liu G, Lobenhofer EK, Luo J, Luo W, McCall MN, Nikolsky Y, Pennello GA, Perkins RG, Philip R, Popovici V, Price ND, Qian F, Scherer A, Shi T, Shi W, Sung J, Thierry-Mieg D, Thierry-Mieg J, Thodima V, Trygg J, Vishnuvajjala L, Wang SJ, Wu J, Wu Y, Xie Q, Yousef WA, Zhang L, Zhang X, Zhong S, Zhou Y, Zhu S, Arasappan D, Bao W, Lucas AB, Berthold F, Brennan RJ, Buness A, Catalano JG, Chang C, Chen R, Cheng Y, Cui J, Czika W, Demichelis F, Deng X, Dosymbekov D, Eils R, Feng Y, Fostel J, Fulmer-Smentek S, Fuscoe JC, Gatto L, Ge W, Goldstein DR, Guo L, Halbert DN, Han J, Harris SC, Hatzis C, Herman D, Huang J, Jensen RV, Jiang R, Johnson CD, Jurman G, Kahlert Y, Khuder SA, Kohl M, Li J, Li L, Li M, Li QZ, Li S, Li Z, Liu J, Liu Y, Liu Z, Meng L, Madera M, Martinez-Murillo F, Medina I, Meehan J, Miclaus K, Moffitt RA, Montaner D, Mukherjee P, Mulligan GJ, Neville P, Nikolskaya T, Ning B, Page GP, Parker J, Parry RM, Peng X, Peterson RL, Phan JH, Quanz B, Ren Y, Riccadonna S, Roter AH, Samuelson FW, Schumacher MM, Shambaugh JD, Shi Q, Shippy R, Si S, Smalter A, Sotiriou C, Soukup M, Staedtler F, Steiner G, Stokes TH, Sun Q, Tan PY, Tang R, Tezak Z, Thorn B, Tsyganova M, Turpaz Y, Vega SC, Visintainer R, von Frese J, Wang C, Wang E, Wang J, Wang W, Westermann F, Willey JC, Woods M, Wu S, Xiao N, Xu J, Xu L, Yang L, Zeng X, Zhang J, Zhang L, Zhang M, Zhao C, Puri RK, Scherf U, Tong W, Wolfinger RD; MAQC Consortium.

Nat Biotechnol. 2010 Aug;28(8):827-38. doi: 10.1038/nbt.1665. Epub 2010 Jul 30.

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