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Items: 1 to 50 of 153

1.

Qualitative Analyses of Polishing and Precoating FIB Milled Crystals for MicroED.

Martynowycz MW, Zhao W, Hattne J, Jensen GJ, Gonen T.

Structure. 2019 Aug 13. pii: S0969-2126(19)30236-9. doi: 10.1016/j.str.2019.07.004. [Epub ahead of print]

PMID:
31422911
2.

In situ imaging of the bacterial flagellar motor disassembly and assembly processes.

Kaplan M, Subramanian P, Ghosal D, Oikonomou CM, Pirbadian S, Starwalt-Lee R, Mageswaran SK, Ortega DR, Gralnick JA, El-Naggar MY, Jensen GJ.

EMBO J. 2019 Jul 15;38(14):e100957. doi: 10.15252/embj.2018100957. Epub 2019 May 20.

PMID:
31304634
3.

In situ imaging of the bacterial flagellar motor disassembly and assembly processes.

Kaplan M, Subramanian P, Ghosal D, Oikonomou CM, Pirbadian S, Starwalt-Lee R, Mageswaran SK, Ortega DR, Gralnick JA, El-Naggar MY, Jensen GJ.

EMBO J. 2019 May 20. pii: e100957. doi: 10.15252/embj.2018100957. [Epub ahead of print]

PMID:
31109936
4.

Fusion of DARPin to Aldolase Enables Visualization of Small Protein by Cryo-EM.

Yao Q, Weaver SJ, Mock JY, Jensen GJ.

Structure. 2019 Jul 2;27(7):1148-1155.e3. doi: 10.1016/j.str.2019.04.003. Epub 2019 May 9.

PMID:
31080120
5.

Molecular architecture, polar targeting and biogenesis of the Legionella Dot/Icm T4SS.

Ghosal D, Jeong KC, Chang YW, Gyore J, Teng L, Gardner A, Vogel JP, Jensen GJ.

Nat Microbiol. 2019 Jul;4(7):1173-1182. doi: 10.1038/s41564-019-0427-4. Epub 2019 Apr 22.

PMID:
31011165
6.

ETDB-Caltech: A blockchain-based distributed public database for electron tomography.

Ortega DR, Oikonomou CM, Ding HJ, Rees-Lee P; Alexandria, Jensen GJ.

PLoS One. 2019 Apr 15;14(4):e0215531. doi: 10.1371/journal.pone.0215531. eCollection 2019.

7.

Electron Cryotomography of Bacterial Secretion Systems.

Oikonomou CM, Jensen GJ.

Microbiol Spectr. 2019 Mar;7(2). doi: 10.1128/microbiolspec.PSIB-0019-2018.

8.

Simulations suggest a constrictive force is required for Gram-negative bacterial cell division.

Nguyen LT, Oikonomou CM, Ding HJ, Kaplan M, Yao Q, Chang YW, Beeby M, Jensen GJ.

Nat Commun. 2019 Mar 19;10(1):1259. doi: 10.1038/s41467-019-09264-0.

9.

De Novo Structural Pattern Mining in Cellular Electron Cryotomograms.

Xu M, Singla J, Tocheva EI, Chang YW, Stevens RC, Jensen GJ, Alber F.

Structure. 2019 Apr 2;27(4):679-691.e14. doi: 10.1016/j.str.2019.01.005. Epub 2019 Feb 7.

PMID:
30744995
10.

In Situ Imaging and Structure Determination of Bacterial Toxin Delivery Systems Using Electron Cryotomography.

Ghosal D, Kaplan M, Chang YW, Jensen GJ.

Methods Mol Biol. 2019;1921:249-265. doi: 10.1007/978-1-4939-9048-1_16.

PMID:
30694497
11.

FGF21 trafficking in intact human cells revealed by cryo-electron tomography with gold nanoparticles.

Azubel M, Carter SD, Weiszmann J, Zhang J, Jensen GJ, Li Y, Kornberg RD.

Elife. 2019 Jan 28;8. pii: e43146. doi: 10.7554/eLife.43146.

12.

Collection of Continuous Rotation MicroED Data from Ion Beam-Milled Crystals of Any Size.

Martynowycz MW, Zhao W, Hattne J, Jensen GJ, Gonen T.

Structure. 2019 Mar 5;27(3):545-548.e2. doi: 10.1016/j.str.2018.12.003. Epub 2019 Jan 17.

13.

The presence and absence of periplasmic rings in bacterial flagellar motors correlates with stator type.

Kaplan M, Ghosal D, Subramanian P, Oikonomou CM, Kjaer A, Pirbadian S, Ortega DR, Briegel A, El-Naggar MY, Jensen GJ.

Elife. 2019 Jan 16;8. pii: e43487. doi: 10.7554/eLife.43487.

14.

Rapid tilt-series acquisition for electron cryotomography.

Chreifi G, Chen S, Metskas LA, Kaplan M, Jensen GJ.

J Struct Biol. 2019 Feb 1;205(2):163-169. doi: 10.1016/j.jsb.2018.12.008. Epub 2019 Jan 11.

PMID:
30639925
15.

Programmed Secretion Arrest and Receptor-Triggered Toxin Export during Antibacterial Contact-Dependent Growth Inhibition.

Ruhe ZC, Subramanian P, Song K, Nguyen JY, Stevens TA, Low DA, Jensen GJ, Hayes CS.

Cell. 2018 Nov 1;175(4):921-933.e14. doi: 10.1016/j.cell.2018.10.033.

PMID:
30388452
16.

Selective Permeability of Carboxysome Shell Pores to Anionic Molecules.

Mahinthichaichan P, Morris DM, Wang Y, Jensen GJ, Tajkhorshid E.

J Phys Chem B. 2018 Oct 4;122(39):9110-9118. doi: 10.1021/acs.jpcb.8b06822. Epub 2018 Sep 21.

PMID:
30193460
17.

Nutrient transport suggests an evolutionary basis for charged archaeal surface layer proteins.

Li PN, Herrmann J, Tolar BB, Poitevin F, Ramdasi R, Bargar JR, Stahl DA, Jensen GJ, Francis CA, Wakatsuki S, van den Bedem H.

ISME J. 2018 Oct;12(10):2389-2402. doi: 10.1038/s41396-018-0191-0. Epub 2018 Jun 13.

PMID:
29899515
18.

Coarse-grained simulations of actomyosin rings point to a nodeless model involving both unipolar and bipolar myosins.

Nguyen LT, Swulius MT, Aich S, Mishra M, Jensen GJ.

Mol Biol Cell. 2018 Jun 1;29(11):1318-1331. doi: 10.1091/mbc.E17-12-0736. Epub 2018 Apr 10.

19.

In Vivo Structures of the Helicobacter pylori cag Type IV Secretion System.

Chang YW, Shaffer CL, Rettberg LA, Ghosal D, Jensen GJ.

Cell Rep. 2018 Apr 17;23(3):673-681. doi: 10.1016/j.celrep.2018.03.085.

20.

Ultrastructure of Shewanella oneidensis MR-1 nanowires revealed by electron cryotomography.

Subramanian P, Pirbadian S, El-Naggar MY, Jensen GJ.

Proc Natl Acad Sci U S A. 2018 Apr 3;115(14):E3246-E3255. doi: 10.1073/pnas.1718810115. Epub 2018 Mar 19.

21.

Electron cryotomography of Mycoplasma pneumoniae mutants correlates terminal organelle architectural features and function.

Krause DC, Chen S, Shi J, Jensen AJ, Sheppard ES, Jensen GJ.

Mol Microbiol. 2018 May;108(3):306-318. doi: 10.1111/mmi.13937. Epub 2018 Mar 11.

22.

Structure of the fission yeast actomyosin ring during constriction.

Swulius MT, Nguyen LT, Ladinsky MS, Ortega DR, Aich S, Mishra M, Jensen GJ.

Proc Natl Acad Sci U S A. 2018 Feb 13;115(7):E1455-E1464. doi: 10.1073/pnas.1711218115. Epub 2018 Jan 18.

23.

The development of cryo-EM and how it has advanced microbiology.

Oikonomou CM, Jensen GJ.

Nat Microbiol. 2017 Dec;2(12):1577-1579. doi: 10.1038/s41564-017-0073-7. No abstract available.

PMID:
29176698
24.

Assigning chemoreceptors to chemosensory pathways in Pseudomonas aeruginosa.

Ortega DR, Fleetwood AD, Krell T, Harwood CS, Jensen GJ, Zhulin IB.

Proc Natl Acad Sci U S A. 2017 Nov 28;114(48):12809-12814. doi: 10.1073/pnas.1708842114. Epub 2017 Nov 13.

25.

Distinguishing signal from autofluorescence in cryogenic correlated light and electron microscopy of mammalian cells.

Carter SD, Mageswaran SK, Farino ZJ, Mamede JI, Oikonomou CM, Hope TJ, Freyberg Z, Jensen GJ.

J Struct Biol. 2018 Jan;201(1):15-25. doi: 10.1016/j.jsb.2017.10.009. Epub 2017 Oct 25.

26.

Nitrosopumilus maritimus gen. nov., sp. nov., Nitrosopumilus cobalaminigenes sp. nov., Nitrosopumilus oxyclinae sp. nov., and Nitrosopumilus ureiphilus sp. nov., four marine ammonia-oxidizing archaea of the phylum Thaumarchaeota.

Qin W, Heal KR, Ramdasi R, Kobelt JN, Martens-Habbena W, Bertagnolli AD, Amin SA, Walker CB, Urakawa H, Könneke M, Devol AH, Moffett JW, Armbrust EV, Jensen GJ, Ingalls AE, Stahl DA.

Int J Syst Evol Microbiol. 2017 Dec;67(12):5067-5079. doi: 10.1099/ijsem.0.002416. Epub 2017 Oct 16.

PMID:
29034851
27.

FtsEX-mediated regulation of the final stages of cell division reveals morphogenetic plasticity in Caulobacter crescentus.

Meier EL, Daitch AK, Yao Q, Bhargava A, Jensen GJ, Goley ED.

PLoS Genet. 2017 Sep 8;13(9):e1006999. doi: 10.1371/journal.pgen.1006999. eCollection 2017 Sep.

28.

LytM factors affect the recruitment of autolysins to the cell division site in Caulobacter crescentus.

Zielińska A, Billini M, Möll A, Kremer K, Briegel A, Izquierdo Martinez A, Jensen GJ, Thanbichler M.

Mol Microbiol. 2017 Nov;106(3):419-438. doi: 10.1111/mmi.13775. Epub 2017 Sep 14.

29.

Photon-Induced Near-Field Electron Microscopy of Eukaryotic Cells.

Kaplan M, Yoo BK, Tang J, Karam TE, Liao B, Majumdar D, Baltimore D, Jensen GJ, Zewail AH.

Angew Chem Int Ed Engl. 2017 Sep 11;56(38):11498-11501. doi: 10.1002/anie.201706120. Epub 2017 Aug 10.

PMID:
28736869
30.

Morphology of the archaellar motor and associated cytoplasmic cone in Thermococcus kodakaraensis.

Briegel A, Oikonomou CM, Chang YW, Kjær A, Huang AN, Kim KW, Ghosal D, Nguyen HH, Kenny D, Ogorzalek Loo RR, Gunsalus RP, Jensen GJ.

EMBO Rep. 2017 Sep;18(9):1660-1670. doi: 10.15252/embr.201744070. Epub 2017 Jul 19.

31.

A new view into prokaryotic cell biology from electron cryotomography.

Oikonomou CM, Jensen GJ.

Nat Rev Microbiol. 2017 Feb;15(2):128. doi: 10.1038/nrmicro.2016.195. Epub 2016 Dec 28. No abstract available.

PMID:
28704355
32.

Polar delivery of Legionella type IV secretion system substrates is essential for virulence.

Jeong KC, Ghosal D, Chang YW, Jensen GJ, Vogel JP.

Proc Natl Acad Sci U S A. 2017 Jul 25;114(30):8077-8082. doi: 10.1073/pnas.1621438114. Epub 2017 Jul 10.

33.

Uncharacterized Bacterial Structures Revealed by Electron Cryotomography.

Dobro MJ, Oikonomou CM, Piper A, Cohen J, Guo K, Jensen T, Tadayon J, Donermeyer J, Park Y, Solis BA, Kjær A, Jewett AI, McDowall AW, Chen S, Chang YW, Shi J, Subramanian P, Iancu CV, Li Z, Briegel A, Tocheva EI, Pilhofer M, Jensen GJ.

J Bacteriol. 2017 Aug 8;199(17). pii: e00100-17. doi: 10.1128/JB.00100-17. Print 2017 Sep 1.

34.

The Structure, Function and Roles of the Archaeal ESCRT Apparatus.

Samson RY, Dobro MJ, Jensen GJ, Bell SD.

Subcell Biochem. 2017;84:357-377. doi: 10.1007/978-3-319-53047-5_12. Review.

PMID:
28500532
35.

In vivo structures of an intact type VI secretion system revealed by electron cryotomography.

Chang YW, Rettberg LA, Ortega DR, Jensen GJ.

EMBO Rep. 2017 Jul;18(7):1090-1099. doi: 10.15252/embr.201744072. Epub 2017 May 9.

36.

Short FtsZ filaments can drive asymmetric cell envelope constriction at the onset of bacterial cytokinesis.

Yao Q, Jewett AI, Chang YW, Oikonomou CM, Beeby M, Iancu CV, Briegel A, Ghosal D, Jensen GJ.

EMBO J. 2017 Jun 1;36(11):1577-1589. doi: 10.15252/embj.201696235. Epub 2017 Apr 24.

37.

Cellular Electron Cryotomography: Toward Structural Biology In Situ.

Oikonomou CM, Jensen GJ.

Annu Rev Biochem. 2017 Jun 20;86:873-896. doi: 10.1146/annurev-biochem-061516-044741. Epub 2017 Apr 19. Review.

PMID:
28426242
38.

Giant viruses with an expanded complement of translation system components.

Schulz F, Yutin N, Ivanova NN, Ortega DR, Lee TK, Vierheilig J, Daims H, Horn M, Wagner M, Jensen GJ, Kyrpides NC, Koonin EV, Woyke T.

Science. 2017 Apr 7;356(6333):82-85. doi: 10.1126/science.aal4657.

39.

The Variable Internal Structure of the Mycoplasma penetrans Attachment Organelle Revealed by Biochemical and Microscopic Analyses: Implications for Attachment Organelle Mechanism and Evolution.

Distelhorst SL, Jurkovic DA, Shi J, Jensen GJ, Balish MF.

J Bacteriol. 2017 May 25;199(12). pii: e00069-17. doi: 10.1128/JB.00069-17. Print 2017 Jun 15.

40.

In situ structure of the Legionella Dot/Icm type IV secretion system by electron cryotomography.

Ghosal D, Chang YW, Jeong KC, Vogel JP, Jensen GJ.

EMBO Rep. 2017 May;18(5):726-732. doi: 10.15252/embr.201643598. Epub 2017 Mar 23.

41.

Polyphosphate granule biogenesis is temporally and functionally tied to cell cycle exit during starvation in Pseudomonas aeruginosa.

Racki LR, Tocheva EI, Dieterle MG, Sullivan MC, Jensen GJ, Newman DK.

Proc Natl Acad Sci U S A. 2017 Mar 21;114(12):E2440-E2449. doi: 10.1073/pnas.1615575114. Epub 2017 Mar 6.

42.

Sporulation, bacterial cell envelopes and the origin of life.

Tocheva EI, Ortega DR, Jensen GJ.

Nat Rev Microbiol. 2016 Aug;14(8):535-542. doi: 10.1038/nrmicro.2016.85. Epub 2016 Jun 27. Review.

43.

Architecture of the Vibrio cholerae toxin-coregulated pilus machine revealed by electron cryotomography.

Chang YW, Kjær A, Ortega DR, Kovacikova G, Sutherland JA, Rettberg LA, Taylor RK, Jensen GJ.

Nat Microbiol. 2017 Feb 6;2:16269. doi: 10.1038/nmicrobiol.2016.269.

44.

Dynamics of the peptidoglycan biosynthetic machinery in the stalked budding bacterium Hyphomonas neptunium.

Cserti E, Rosskopf S, Chang YW, Eisheuer S, Selter L, Shi J, Regh C, Koert U, Jensen GJ, Thanbichler M.

Mol Microbiol. 2017 Mar;103(5):875-895. doi: 10.1111/mmi.13593. Epub 2017 Jan 19.

45.

Cryo-EM structure of a CD4-bound open HIV-1 envelope trimer reveals structural rearrangements of the gp120 V1V2 loop.

Wang H, Cohen AA, Galimidi RP, Gristick HB, Jensen GJ, Bjorkman PJ.

Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):E7151-E7158. Epub 2016 Oct 31.

46.

Phylogenomic analysis of Candidatus 'Izimaplasma' species: free-living representatives from a Tenericutes clade found in methane seeps.

Skennerton CT, Haroon MF, Briegel A, Shi J, Jensen GJ, Tyson GW, Orphan VJ.

ISME J. 2016 Nov;10(11):2679-2692. doi: 10.1038/ismej.2016.55. Epub 2016 Apr 8.

47.

Starvation and recovery in the deep-sea methanotroph Methyloprofundus sedimenti.

Tavormina PL, Kellermann MY, Antony CP, Tocheva EI, Dalleska NF, Jensen AJ, Valentine DL, Hinrichs KU, Jensen GJ, Dubilier N, Orphan VJ.

Mol Microbiol. 2017 Jan;103(2):242-252. doi: 10.1111/mmi.13553. Epub 2016 Nov 22.

48.

Chemotaxis cluster 1 proteins form cytoplasmic arrays in Vibrio cholerae and are stabilized by a double signaling domain receptor DosM.

Briegel A, Ortega DR, Mann P, Kjær A, Ringgaard S, Jensen GJ.

Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):10412-7. doi: 10.1073/pnas.1604693113. Epub 2016 Aug 29.

49.

Author's reply.

Tocheva EI, Ortega DR, Jensen GJ.

Nat Rev Microbiol. 2016 Sep;14(9):600. doi: 10.1038/nrmicro.2016.114. Epub 2016 Jul 25. No abstract available.

PMID:
27452232
50.

Coarse-Grained Molecular Dynamics Simulations of the Bacterial Cell Wall.

Nguyen LT, Gumbart JC, Jensen GJ.

Methods Mol Biol. 2016;1440:247-70. doi: 10.1007/978-1-4939-3676-2_18.

PMID:
27311677

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