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Items: 1 to 50 of 63

1.

Cluster-Dependent Charge-Transfer Dynamics in Iron-Sulfur Proteins.

Mao Z, Liou SH, Khadka N, Jenney FE Jr, Goodin DB, Seefeldt LC, Adams MWW, Cramer SP, Larsen DS.

Biochemistry. 2018 Feb 13;57(6):978-990. doi: 10.1021/acs.biochem.7b01159. Epub 2018 Jan 24.

2.

Synchrotron-based Nickel Mössbauer Spectroscopy.

Gee LB, Lin CY, Jenney FE Jr, Adams MW, Yoda Y, Masuda R, Saito M, Kobayashi Y, Tamasaku K, Lerche M, Seto M, Riordan CG, Ploskonka A, Power PP, Cramer SP, Lauterbach L.

Inorg Chem. 2016 Jul 18;55(14):6866-72. doi: 10.1021/acs.inorgchem.5b03004. Epub 2016 Jul 7.

3.

Characterization of the [3Fe-4S](0/1+) cluster from the D14C variant of Pyrococcus furiosus ferredoxin via combined NRVS and DFT analyses.

Lauterbach L, Gee LB, Pelmenschikov V, Jenney FE, Kamali S, Yoda Y, Adams MW, Cramer SP.

Dalton Trans. 2016 Apr 25;45(17):7215-9. doi: 10.1039/c5dt04760a.

4.

Observation of the Fe-CN and Fe-CO vibrations in the active site of [NiFe] hydrogenase by nuclear resonance vibrational spectroscopy.

Kamali S, Wang H, Mitra D, Ogata H, Lubitz W, Manor BC, Rauchfuss TB, Byrne D, Bonnefoy V, Jenney FE Jr, Adams MW, Yoda Y, Alp E, Zhao J, Cramer SP.

Angew Chem Int Ed Engl. 2013 Jan 7;52(2):724-8. doi: 10.1002/anie.201204616. Epub 2012 Nov 8.

5.

Engineering hyperthermophilic archaeon Pyrococcus furiosus to overproduce its cytoplasmic [NiFe]-hydrogenase.

Chandrayan SK, McTernan PM, Hopkins RC, Sun J, Jenney FE Jr, Adams MW.

J Biol Chem. 2012 Jan 27;287(5):3257-64. doi: 10.1074/jbc.M111.290916. Epub 2011 Dec 7.

6.

Homologous expression of a subcomplex of Pyrococcus furiosus hydrogenase that interacts with pyruvate ferredoxin oxidoreductase.

Hopkins RC, Sun J, Jenney FE Jr, Chandrayan SK, McTernan PM, Adams MW.

PLoS One. 2011;6(10):e26569. doi: 10.1371/journal.pone.0026569. Epub 2011 Oct 24.

7.

Dynamics of the [4Fe-4S] cluster in Pyrococcus furiosus D14C ferredoxin via nuclear resonance vibrational and resonance Raman spectroscopies, force field simulations, and density functional theory calculations.

Mitra D, Pelmenschikov V, Guo Y, Case DA, Wang H, Dong W, Tan ML, Ichiye T, Jenney FE, Adams MW, Yoda Y, Zhao J, Cramer SP.

Biochemistry. 2011 Jun 14;50(23):5220-35. doi: 10.1021/bi200046p. Epub 2011 May 18.

8.

A computational framework for proteome-wide pursuit and prediction of metalloproteins using ICP-MS and MS/MS data.

Lancaster WA, Praissman JL, Poole FL 2nd, Cvetkovic A, Menon AL, Scott JW, Jenney FE Jr, Thorgersen MP, Kalisiak E, Apon JV, Trauger SA, Siuzdak G, Tainer JA, Adams MW.

BMC Bioinformatics. 2011 Feb 28;12:64. doi: 10.1186/1471-2105-12-64.

9.

Natural competence in the hyperthermophilic archaeon Pyrococcus furiosus facilitates genetic manipulation: construction of markerless deletions of genes encoding the two cytoplasmic hydrogenases.

Lipscomb GL, Stirrett K, Schut GJ, Yang F, Jenney FE Jr, Scott RA, Adams MW, Westpheling J.

Appl Environ Microbiol. 2011 Apr;77(7):2232-8. doi: 10.1128/AEM.02624-10. Epub 2011 Feb 11.

10.

Microbial metalloproteomes are largely uncharacterized.

Cvetkovic A, Menon AL, Thorgersen MP, Scott JW, Poole FL 2nd, Jenney FE Jr, Lancaster WA, Praissman JL, Shanmukh S, Vaccaro BJ, Trauger SA, Kalisiak E, Apon JV, Siuzdak G, Yannone SM, Tainer JA, Adams MW.

Nature. 2010 Aug 5;466(7307):779-82. doi: 10.1038/nature09265. Epub 2010 Jul 18.

PMID:
20639861
11.

Heterologous expression and maturation of an NADP-dependent [NiFe]-hydrogenase: a key enzyme in biofuel production.

Sun J, Hopkins RC, Jenney FE, McTernan PM, Adams MW.

PLoS One. 2010 May 6;5(5):e10526. doi: 10.1371/journal.pone.0010526.

12.

Identification of protein-bound dinitrosyl iron complexes by nuclear resonance vibrational spectroscopy.

Tonzetich ZJ, Wang H, Mitra D, Tinberg CE, Do LH, Jenney FE Jr, Adams MW, Cramer SP, Lippard SJ.

J Am Chem Soc. 2010 May 26;132(20):6914-6. doi: 10.1021/ja101002f.

13.

Oxidative stress protection and the repair response to hydrogen peroxide in the hyperthermophilic archaeon Pyrococcus furiosus and in related species.

Strand KR, Sun C, Li T, Jenney FE Jr, Schut GJ, Adams MW.

Arch Microbiol. 2010 Jun;192(6):447-59. doi: 10.1007/s00203-010-0570-z. Epub 2010 Apr 9.

PMID:
20379702
14.

Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS).

Hura GL, Menon AL, Hammel M, Rambo RP, Poole FL 2nd, Tsutakawa SE, Jenney FE Jr, Classen S, Frankel KA, Hopkins RC, Yang SJ, Scott JW, Dillard BD, Adams MW, Tainer JA.

Nat Methods. 2009 Aug;6(8):606-12. doi: 10.1038/nmeth.1353. Epub 2009 Jul 20.

15.

Novel multiprotein complexes identified in the hyperthermophilic archaeon Pyrococcus furiosus by non-denaturing fractionation of the native proteome.

Menon AL, Poole FL 2nd, Cvetkovic A, Trauger SA, Kalisiak E, Scott JW, Shanmukh S, Praissman J, Jenney FE Jr, Wikoff WR, Apon JV, Siuzdak G, Adams MW.

Mol Cell Proteomics. 2009 Apr;8(4):735-51. doi: 10.1074/mcp.M800246-MCP200. Epub 2008 Nov 28.

16.

Hydrogenesis in hyperthermophilic microorganisms: implications for biofuels.

Chou CJ, Jenney FE Jr, Adams MW, Kelly RM.

Metab Eng. 2008 Nov;10(6):394-404. doi: 10.1016/j.ymben.2008.06.007. Epub 2008 Jun 28. Review.

PMID:
18647659
17.

Hydrogenases of the model hyperthermophiles.

Jenney FE Jr, Adams MW.

Ann N Y Acad Sci. 2008 Mar;1125:252-66. doi: 10.1196/annals.1419.013. Review.

PMID:
18378597
18.

Solvent tuning of electrochemical potentials in the active sites of HiPIP versus ferredoxin.

Dey A, Jenney FE Jr, Adams MW, Babini E, Takahashi Y, Fukuyama K, Hodgson KO, Hedman B, Solomon EI.

Science. 2007 Nov 30;318(5855):1464-8.

19.

Structural and transcriptional analyses of a purine nucleotide-binding protein from Pyrococcus furiosus: a component of a novel, membrane-bound multiprotein complex unique to this hyperthermophilic archaeon.

Gerwe B, Kelley LL, Dillard BD, Lai T, Liu ZJ, Tempel W, Chen L, Habel J, Lee D, Jenney FE Jr, Sugar FJ, Richardson JS, Richardson DC, Newton MG, Wang BC, Adams MW, Rose JP.

J Struct Funct Genomics. 2007 Mar;8(1):1-10. Epub 2007 Oct 12.

PMID:
17932790
20.

Sulfur K-edge X-ray absorption spectroscopy and density functional theory calculations on superoxide reductase: role of the axial thiolate in reactivity.

Dey A, Jenney FE Jr, Adams MW, Johnson MK, Hodgson KO, Hedman B, Solomon EI.

J Am Chem Soc. 2007 Oct 17;129(41):12418-31. Epub 2007 Sep 22.

21.

Dispersion interactions govern the strong thermal stability of a protein.

Vondrásek J, Kubar T, Jenney FE Jr, Adams MW, Kozísek M, Cerný J, Sklenár V, Hobza P.

Chemistry. 2007;13(32):9022-7.

PMID:
17696186
22.

Structure of the hypothetical protein PF0899 from Pyrococcus furiosus at 1.85 A resolution.

Kelley LL, Dillard BD, Tempel W, Chen L, Shaw N, Lee D, Newton MG, Sugar FJ, Jenney FE Jr, Lee HS, Shah C, Poole FL 3rd, Adams MW, Richardson JS, Richardson DC, Liu ZJ, Wang BC, Rose J.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Jul 1;63(Pt 7):549-52. Epub 2007 Jun 11.

23.

The impact of extremophiles on structural genomics (and vice versa).

Jenney FE Jr, Adams MW.

Extremophiles. 2008 Jan;12(1):39-50. Epub 2007 Jun 13. Review.

PMID:
17563834
24.

The first agmatine/cadaverine aminopropyl transferase: biochemical and structural characterization of an enzyme involved in polyamine biosynthesis in the hyperthermophilic archaeon Pyrococcus furiosus.

Cacciapuoti G, Porcelli M, Moretti MA, Sorrentino F, Concilio L, Zappia V, Liu ZJ, Tempel W, Schubot F, Rose JP, Wang BC, Brereton PS, Jenney FE, Adams MW.

J Bacteriol. 2007 Aug;189(16):6057-67. Epub 2007 Jun 1.

25.

An enhancer mutant of Arabidopsis salt overly sensitive 3 mediates both ion homeostasis and the oxidative stress response.

Zhu J, Fu X, Koo YD, Zhu JK, Jenney FE Jr, Adams MW, Zhu Y, Shi H, Yun DJ, Hasegawa PM, Bressan RA.

Mol Cell Biol. 2007 Jul;27(14):5214-24. Epub 2007 May 7.

26.

PF0610, a novel winged helix-turn-helix variant possessing a rubredoxin-like Zn ribbon motif from the hyperthermophilic archaeon, Pyrococcus furiosus.

Wang X, Lee HS, Sugar FJ, Jenney FE Jr, Adams MW, Prestegard JH.

Biochemistry. 2007 Jan 23;46(3):752-61.

PMID:
17223696
27.

Observation of terahertz vibrations in Pyrococcus furiosus rubredoxin via impulsive coherent vibrational spectroscopy and nuclear resonance vibrational spectroscopy--interpretation by molecular mechanics.

Tan ML, Bizzarri AR, Xiao Y, Cannistraro S, Ichiye T, Manzoni C, Cerullo G, Adams MW, Jenney FE Jr, Cramer SP.

J Inorg Biochem. 2007 Mar;101(3):375-84. Epub 2006 Oct 20.

PMID:
17204331
28.

Comparing the electronic properties of the low-spin cyano-ferric [Fe(N4)(Cys)] active sites of superoxide reductase and p450cam using ENDOR spectroscopy and DFT calculations.

Yang TC, McNaughton RL, Clay MD, Jenney FE Jr, Krishnan R, Kurtz DM Jr, Adams MW, Johnson MK, Hoffman BM.

J Am Chem Soc. 2006 Dec 27;128(51):16566-78.

PMID:
17177406
29.

Structure determination of a new protein from backbone-centered NMR data and NMR-assisted structure prediction.

Mayer KL, Qu Y, Bansal S, LeBlond PD, Jenney FE Jr, Brereton PS, Adams MW, Xu Y, Prestegard JH.

Proteins. 2006 Nov 1;65(2):480-9.

PMID:
16927360
30.

Transcriptional and biochemical analysis of starch metabolism in the hyperthermophilic archaeon Pyrococcus furiosus.

Lee HS, Shockley KR, Schut GJ, Conners SB, Montero CI, Johnson MR, Chou CJ, Bridger SL, Wigner N, Brehm SD, Jenney FE Jr, Comfort DA, Kelly RM, Adams MW.

J Bacteriol. 2006 Mar;188(6):2115-25.

31.

Geometries and electronic structures of cyanide adducts of the non-heme iron active site of superoxide reductases: vibrational and ENDOR studies.

Clay MD, Yang TC, Jenney FE Jr, Kung IY, Cosper CA, Krishnan R, Kurtz DM Jr, Adams MW, Hoffman BM, Johnson MK.

Biochemistry. 2006 Jan 17;45(2):427-38.

32.

Defining genes in the genome of the hyperthermophilic archaeon Pyrococcus furiosus: implications for all microbial genomes.

Poole FL 2nd, Gerwe BA, Hopkins RC, Schut GJ, Weinberg MV, Jenney FE Jr, Adams MW.

J Bacteriol. 2005 Nov;187(21):7325-32.

33.

Normal mode analysis of Pyrococcus furiosus rubredoxin via nuclear resonance vibrational spectroscopy (NRVS) and resonance raman spectroscopy.

Xiao Y, Wang H, George SJ, Smith MC, Adams MW, Jenney FE Jr, Sturhahn W, Alp EE, Zhao J, Yoda Y, Dey A, Solomon EI, Cramer SP.

J Am Chem Soc. 2005 Oct 26;127(42):14596-606.

PMID:
16231912
34.

Protein production and crystallization at SECSG -- an overview.

Wang BC, Adams MW, Dailey H, DeLucas L, Luo M, Rose J, Bunzel R, Dailey T, Habel J, Horanyi P, Jenney FE Jr, Kataeva I, Lee HS, Li S, Li T, Lin D, Liu ZJ, Luan CH, Mayer M, Nagy L, Newton MG, Ng J, Poole FL 2nd, Shah A, Shah C, Sugar FJ, Xu H.

J Struct Funct Genomics. 2005;6(2-3):233-43.

PMID:
16211524
35.

Comparison of small- and large-scale expression of selected Pyrococcus furiosus genes as an aid to high-throughput protein production.

Sugar FJ, Jenney FE Jr, Poole FL 2nd, Brereton PS, Izumi M, Shah C, Adams MW.

J Struct Funct Genomics. 2005;6(2-3):149-58.

PMID:
16211512
36.

In vitro reconstitution of an NADPH-dependent superoxide reduction pathway from Pyrococcus furiosus.

Grunden AM, Jenney FE Jr, Ma K, Ji M, Weinberg MV, Adams MW.

Appl Environ Microbiol. 2005 Mar;71(3):1522-30.

37.
38.

Backbone solution structures of proteins using residual dipolar couplings: application to a novel structural genomics target.

Valafar H, Mayer KL, Bougault CM, LeBlond PD, Jenney FE Jr, Brereton PS, Adams MW, Prestegard JH.

J Struct Funct Genomics. 2004;5(4):241-54.

39.

Bottlenecks and roadblocks in high-throughput XAS for structural genomics.

Scott RA, Shokes JE, Cosper NJ, Jenney FE, Adams MW.

J Synchrotron Radiat. 2005 Jan;12(Pt 1):19-22. Epub 2004 Dec 23.

PMID:
15616360
40.

High-throughput production of Pyrococcus furiosus proteins: considerations for metalloproteins.

Jenney FE Jr, Brereton PS, Izumi M, Poole FL 2nd, Shah C, Sugar FJ, Lee HS, Adams MW.

J Synchrotron Radiat. 2005 Jan;12(Pt 1):8-12. Epub 2004 Dec 23.

PMID:
15616358
41.
42.

Structural genomics of Pyrococcus furiosus: X-ray crystallography reveals 3D domain swapping in rubrerythrin.

Tempel W, Liu ZJ, Schubot FD, Shah A, Weinberg MV, Jenney FE Jr, Arendall WB 3rd, Adams MW, Richardson JS, Richardson DC, Rose JP, Wang BC.

Proteins. 2004 Dec 1;57(4):878-82. No abstract available.

PMID:
15468318
43.

A neutron crystallographic analysis of a rubredoxin mutant at 1.6 A resolution.

Chatake T, Kurihara K, Tanaka I, Tsyba I, Bau R, Jenney FE Jr, Adams MW, Niimura N.

Acta Crystallogr D Biol Crystallogr. 2004 Aug;60(Pt 8):1364-73. Epub 2004 Jul 21.

PMID:
15272158
44.

Neutron crystallographic study on rubredoxin from Pyrococcus furiosus by BIX-3, a single-crystal diffractometer for biomacromolecules.

Kurihara K, Tanaka I, Chatake T, Adams MW, Jenney FE Jr, Moiseeva N, Bau R, Niimura N.

Proc Natl Acad Sci U S A. 2004 Aug 3;101(31):11215-20. Epub 2004 Jul 22.

45.

W3Y single mutant of rubredoxin from Pyrococcus furiosus: a preliminary time-of-flight neutron study.

Li X, Langan P, Bau R, Tsyba I, Jenney FE Jr, Adams MW, Schoenborn BP.

Acta Crystallogr D Biol Crystallogr. 2004 Jan;60(Pt 1):200-2. Epub 2003 Dec 18.

PMID:
14684930
46.

Observation of Fe-H/D modes by nuclear resonant vibrational spectroscopy.

Bergmann U, Sturhahn W, Linn DE Jr, Jenney FE Jr, Adams MW, Rupnik K, Hales BJ, Alp EE, Mayse A, Cramer SP.

J Am Chem Soc. 2003 Apr 9;125(14):4016-7.

PMID:
12670200
47.

Nitric oxide binding at the mononuclear active site of reduced Pyrococcus furiosus superoxide reductase.

Clay MD, Cosper CA, Jenney FE Jr, Adams MW, Johnson MK.

Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):3796-801. Epub 2003 Mar 24.

48.

Resonance Raman characterization of the mononuclear iron active-site vibrations and putative electron transport pathways in Pyrococcus furiosus superoxide reductase.

Clay MD, Jenney FE Jr, Noh HJ, Hagedoorn PL, Adams MW, Johnson MK.

Biochemistry. 2002 Aug 6;41(31):9833-41.

PMID:
12146949
49.

Superoxide reductase: fact or fiction?

Adams MW, Jenney FE Jr, Clay MD, Johnson MK.

J Biol Inorg Chem. 2002 Jun;7(6):647-52. Epub 2002 Apr 18. Review.

PMID:
12072972
50.

Spectroscopic studies of Pyrococcus furiosus superoxide reductase: implications for active-site structures and the catalytic mechanism.

Clay MD, Jenney FE Jr, Hagedoorn PL, George GN, Adams MW, Johnson MK.

J Am Chem Soc. 2002 Feb 6;124(5):788-805.

PMID:
11817955

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