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Items: 32

1.

Genetic Aberration Analysis in Thai Colorectal Adenoma and Early-Stage Adenocarcinoma Patients by Whole-Exome Sequencing.

Intarajak T, Udomchaiprasertkul W, Bunyoo C, Yimnoon J, Soonklang K, Wiriyaukaradecha K, Lamlertthon W, Sricharunrat T, Chaiwiriyawong W, Siriphongpreeda B, Sutheeworapong S, Kusonmano K, Kittichotirat W, Thammarongtham C, Jenjaroenpun P, Wongsurawat T, Nookaew I, Auewarakul C, Cheevadhanarak S.

Cancers (Basel). 2019 Jul 12;11(7). pii: E977. doi: 10.3390/cancers11070977.

2.

Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016.

Alkam D, Jenjaroenpun P, Wongsurawat T, Udaondo Z, Patumcharoenpol P, Robeson M, Haselow D, Mason W, Nookaew I, Ussery D, Jun SR.

Infect Genet Evol. 2019 Jul 15;75:103965. doi: 10.1016/j.meegid.2019.103965. [Epub ahead of print]

PMID:
31319177
3.

Decaffeinated Green Tea Extract Does Not Elicit Hepatotoxic Effects and Modulates the Gut Microbiome in Lean B6C3F₁ Mice.

Gurley BJ, Miousse IR, Nookaew I, Ewing LE, Skinner CM, Jenjaroenpun P, Wongsurawat T, Kennon-McGill S, Avula B, Bae JY, McGill MR, Ussery D, Khan IA, Koturbash I.

Nutrients. 2019 Apr 3;11(4). pii: E776. doi: 10.3390/nu11040776.

4.

Draft Genome Sequences of 48 Vancomycin-Resistant Enterococcus faecium Strains Isolated from Inpatients with Bacteremia and Urinary Tract Infection.

Udaondo Z, Wongsurawat T, Jenjaroenpun P, Anderson C, Lopez J, Mohan M, Tytarenko R, Walker B, Nookaew I, Ussery D, Kothari A, Jun SR.

Microbiol Resour Announc. 2019 Apr 11;8(15). pii: e00222-19. doi: 10.1128/MRA.00222-19.

5.

Rapid Sequencing of Multiple RNA Viruses in Their Native Form.

Wongsurawat T, Jenjaroenpun P, Taylor MK, Lee J, Tolardo AL, Parvathareddy J, Kandel S, Wadley TD, Kaewnapan B, Athipanyasilp N, Skidmore A, Chung D, Chaimayo C, Whitt M, Kantakamalakul W, Sutthent R, Horthongkham N, Ussery DW, Jonsson CB, Nookaew I.

Front Microbiol. 2019 Feb 25;10:260. doi: 10.3389/fmicb.2019.00260. eCollection 2019.

6.

Complete Genome and Plasmid Sequences of Escherichia coli Type Strain ATCC 11775.

Wadley TD, Jenjaroenpun P, Wongsurawat T, Ussery DW, Nookaew I.

Microbiol Resour Announc. 2019 Feb 28;8(9). pii: e00046-19. doi: 10.1128/MRA.00046-19. eCollection 2019 Feb.

7.

Genome Sequences of Zika Virus Strains Recovered from Amniotic Fluid, Placenta, and Fetal Brain of a Microcephaly Patient in Thailand, 2017.

Wongsurawat T, Jenjaroenpun P, Athipanyasilp N, Kaewnapan B, Leelahakorn N, Angkasekwinai N, Kantakamalakul W, Sutthent R, Ussery DW, Horthongkham N, Nookaew I.

Microbiol Resour Announc. 2018 Sep 20;7(11). pii: e01020-18. doi: 10.1128/MRA.01020-18. eCollection 2018 Sep.

8.

PARP1 Is Up-Regulated in Non-small Cell Lung Cancer Tissues in the Presence of the Cyanobacterial Toxin Microcystin.

Apopa PL, Alley L, Penney RB, Arnaoutakis K, Steliga MA, Jeffus S, Bircan E, Gopalan B, Jin J, Patumcharoenpol P, Jenjaroenpun P, Wongsurawat T, Shah N, Boysen G, Ussery D, Nookaew I, Fagan P, Bebek G, Orloff MS.

Front Microbiol. 2018 Aug 6;9:1757. doi: 10.3389/fmicb.2018.01757. eCollection 2018.

9.

Toward predictive R-loop computational biology: genome-scale prediction of R-loops reveals their association with complex promoter structures, G-quadruplexes and transcriptionally active enhancers.

Kuznetsov VA, Bondarenko V, Wongsurawat T, Yenamandra SP, Jenjaroenpun P.

Nucleic Acids Res. 2018 Sep 6;46(15):8023. doi: 10.1093/nar/gky690. No abstract available.

10.

Case of Microcephaly after Congenital Infection with Asian Lineage Zika Virus, Thailand.

Wongsurawat T, Athipanyasilp N, Jenjaroenpun P, Jun SR, Kaewnapan B, Wassenaar TM, Leelahakorn N, Angkasekwinai N, Kantakamalakul W, Ussery DW, Sutthent R, Nookaew I, Horthongkham N.

Emerg Infect Dis. 2018 Sep;24(9). doi: 10.3201/eid2409.180416. Epub 2018 Sep 17.

11.
12.

Discovering novel SNPs that are correlated with patient outcome in a Singaporean cancer patient cohort treated with gemcitabine-based chemotherapy.

Limviphuvadh V, Tan CS, Konishi F, Jenjaroenpun P, Xiang JS, Kremenska Y, Mu YS, Syn N, Lee SC, Soo RA, Eisenhaber F, Maurer-Stroh S, Yong WP.

BMC Cancer. 2018 May 11;18(1):555. doi: 10.1186/s12885-018-4471-x.

13.

Genome-Based Comparison of Clostridioides difficile: Average Amino Acid Identity Analysis of Core Genomes.

Cabal A, Jun SR, Jenjaroenpun P, Wanchai V, Nookaew I, Wongsurawat T, Burgess MJ, Kothari A, Wassenaar TM, Ussery DW.

Microb Ecol. 2018 Oct;76(3):801-813. doi: 10.1007/s00248-018-1155-7. Epub 2018 Feb 14.

14.

Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D.

Jenjaroenpun P, Wongsurawat T, Pereira R, Patumcharoenpol P, Ussery DW, Nielsen J, Nookaew I.

Nucleic Acids Res. 2018 Apr 20;46(7):e38. doi: 10.1093/nar/gky014.

15.

Single-cell gene expression analysis reveals regulators of distinct cell subpopulations among developing human neurons.

Wang J, Jenjaroenpun P, Bhinge A, Angarica VE, Del Sol A, Nookaew I, Kuznetsov VA, Stanton LW.

Genome Res. 2017 Nov;27(11):1783-1794. doi: 10.1101/gr.223313.117. Epub 2017 Oct 13.

16.

Three Complete Genome Sequences of Genotype G Mumps Virus from the 2016 Outbreak in Arkansas, USA.

Alkam D, Wongsurawat T, Jenjaroenpun P, Connor S, Hobbs C, Wassenaar TM, Jun SR, Nookaew I, Ussery D.

Genome Announc. 2017 Aug 10;5(32). pii: e00555-17. doi: 10.1128/genomeA.00555-17.

17.

Transposon insertional mutagenesis in mice identifies human breast cancer susceptibility genes and signatures for stratification.

Chen L, Jenjaroenpun P, Pillai AM, Ivshina AV, Ow GS, Efthimios M, Zhiqun T, Tan TZ, Lee SC, Rogers K, Ward JM, Mori S, Adams DJ, Jenkins NA, Copeland NG, Ban KH, Kuznetsov VA, Thiery JP.

Proc Natl Acad Sci U S A. 2017 Mar 14;114(11):E2215-E2224. doi: 10.1073/pnas.1701512114. Epub 2017 Mar 1.

18.

R-loopDB: a database for R-loop forming sequences (RLFS) and R-loops.

Jenjaroenpun P, Wongsurawat T, Sutheeworapong S, Kuznetsov VA.

Nucleic Acids Res. 2017 Jan 4;45(D1):D119-D127. doi: 10.1093/nar/gkw1054. Epub 2016 Nov 28.

19.

Sense-antisense gene-pairs in breast cancer and associated pathological pathways.

Grinchuk OV, Motakis E, Yenamandra SP, Ow GS, Jenjaroenpun P, Tang Z, Yarmishyn AA, Ivshina AV, Kuznetsov VA.

Oncotarget. 2015 Dec 8;6(39):42197-221. doi: 10.18632/oncotarget.6255.

20.

QmRLFS-finder: a model, web server and stand-alone tool for prediction and analysis of R-loop forming sequences.

Jenjaroenpun P, Wongsurawat T, Yenamandra SP, Kuznetsov VA.

Nucleic Acids Res. 2015 Nov 16;43(20):10081. doi: 10.1093/nar/gkv974. Epub 2015 Sep 22. No abstract available.

21.

Contrasting expression patterns of coding and noncoding parts of the human genome upon oxidative stress.

Giannakakis A, Zhang J, Jenjaroenpun P, Nama S, Zainolabidin N, Aau MY, Yarmishyn AA, Vaz C, Ivshina AV, Grinchuk OV, Voorhoeve M, Vardy LA, Sampath P, Kuznetsov VA, Kurochkin IV, Guccione E.

Sci Rep. 2015 May 29;5:9737. doi: 10.1038/srep09737.

22.

Duplex stem-loop-containing quadruplex motifs in the human genome: a combined genomic and structural study.

Lim KW, Jenjaroenpun P, Low ZJ, Khong ZJ, Ng YS, Kuznetsov VA, Phan AT.

Nucleic Acids Res. 2015 Jun 23;43(11):5630-46. doi: 10.1093/nar/gkv355. Epub 2015 May 9.

23.

QmRLFS-finder: a model, web server and stand-alone tool for prediction and analysis of R-loop forming sequences.

Jenjaroenpun P, Wongsurawat T, Yenamandra SP, Kuznetsov VA.

Nucleic Acids Res. 2015 Jul 1;43(W1):W527-34. doi: 10.1093/nar/gkv344. Epub 2015 Apr 16. Erratum in: Nucleic Acids Res. 2015 Nov 16;43(20):10081.

24.

The TTSMI database: a catalog of triplex target DNA sites associated with genes and regulatory elements in the human genome.

Jenjaroenpun P, Chew CS, Yong TP, Choowongkomon K, Thammasorn W, Kuznetsov VA.

Nucleic Acids Res. 2015 Jan;43(Database issue):D110-6. doi: 10.1093/nar/gku970. Epub 2014 Oct 16.

25.

R-loops in proliferating cells but not in the brain: implications for AOA2 and other autosomal recessive ataxias.

Yeo AJ, Becherel OJ, Luff JE, Cullen JK, Wongsurawat T, Jenjaroenpun P, Kuznetsov VA, McKinnon PJ, Lavin MF.

PLoS One. 2014 Mar 17;9(3):e90219. doi: 10.1371/journal.pone.0090219. eCollection 2014. Erratum in: PLoS One. 2014;9(8):e105258. Jenjaroenpoon, Piroon [corrected to Jenjaroenpun, Piroon].

26.

Role of genomic architecture in the expression dynamics of long noncoding RNAs during differentiation of human neuroblastoma cells.

Batagov AO, Yarmishyn AA, Jenjaroenpun P, Tan JZ, Nishida Y, Kurochkin IV.

BMC Syst Biol. 2013 Oct 16;7 Suppl 3:S11. doi: 10.1186/1752-0509-7-S3-S11.

27.

Characterization of RNA in exosomes secreted by human breast cancer cell lines using next-generation sequencing.

Jenjaroenpun P, Kremenska Y, Nair VM, Kremenskoy M, Joseph B, Kurochkin IV.

PeerJ. 2013 Nov 5;1:e201. doi: 10.7717/peerj.201. eCollection 2013.

28.

Ecotopic viral integration site 1 (EVI1) regulates multiple cellular processes important for cancer and is a synergistic partner for FOS protein in invasive tumors.

Bard-Chapeau EA, Jeyakani J, Kok CH, Muller J, Chua BQ, Gunaratne J, Batagov A, Jenjaroenpun P, Kuznetsov VA, Wei CL, D'Andrea RJ, Bourque G, Jenkins NA, Copeland NG.

Proc Natl Acad Sci U S A. 2012 Feb 7;109(6):2168-73. doi: 10.1073/pnas.1119229109. Epub 2012 Jan 19.

29.

Quantitative model of R-loop forming structures reveals a novel level of RNA-DNA interactome complexity.

Wongsurawat T, Jenjaroenpun P, Kwoh CK, Kuznetsov V.

Nucleic Acids Res. 2012 Jan;40(2):e16. doi: 10.1093/nar/gkr1075. Epub 2011 Nov 25.

30.

Statistics of protein-DNA binding and the total number of binding sites for a transcription factor in the mammalian genome.

Kuznetsov VA, Singh O, Jenjaroenpun P.

BMC Genomics. 2010 Feb 10;11 Suppl 1:S12. doi: 10.1186/1471-2164-11-S1-S12.

31.
32.

Integrative analysis of the human cis-antisense gene pairs, miRNAs and their transcription regulation patterns.

Grinchuk OV, Jenjaroenpun P, Orlov YL, Zhou J, Kuznetsov VA.

Nucleic Acids Res. 2010 Jan;38(2):534-47. doi: 10.1093/nar/gkp954. Epub 2009 Nov 11.

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