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Items: 44

1.

TRIM16 employs NRF2, ubiquitin system and aggrephagy for safe disposal of stress-induced misfolded proteins.

Jena KK, Mehto S, Kolapalli SP, Nath P, Chauhan S, Chauhan S.

Cell Stress. 2018 Nov 16;2(12):365-367. doi: 10.15698/cst2018.12.169.

PMID:
31225461
2.

IRGM restrains NLRP3 inflammasome activation by mediating its SQSTM1/p62-dependent selective autophagy.

Mehto S, Chauhan S, Jena KK, Chauhan NR, Nath P, Sahu R, Dhar K, Das SK, Chauhan S.

Autophagy. 2019 Jun 20:1-3. doi: 10.1080/15548627.2019.1628544. [Epub ahead of print]

PMID:
31177914
3.

TRIM16 governs the biogenesis and disposal of stress-induced protein aggregates to evade cytotoxicity: implication for neurodegeneration and cancer.

Jena KK, Mehto S, Kolapalli SP, Nath P, Sahu R, Chauhan NR, Sahoo PK, Dhar K, Das SK, Chauhan S, Chauhan S.

Autophagy. 2019 May;15(5):924-926. doi: 10.1080/15548627.2019.1586251. Epub 2019 Mar 5.

PMID:
30806139
4.

Loss-of-Function Alleles of Heading date 1 (Hd1) Are Associated With Adaptation of Temperate Japonica Rice Plants to the Tropical Region.

Kim SR, Torollo G, Yoon MR, Kwak J, Lee CK, Prahalada GD, Choi IR, Yeo US, Jeong OY, Jena KK, Lee JS.

Front Plant Sci. 2018 Dec 10;9:1827. doi: 10.3389/fpls.2018.01827. eCollection 2018.

5.

The Crohn's Disease Risk Factor IRGM Limits NLRP3 Inflammasome Activation by Impeding Its Assembly and by Mediating Its Selective Autophagy.

Mehto S, Jena KK, Nath P, Chauhan S, Kolapalli SP, Das SK, Sahoo PK, Jain A, Taylor GA, Chauhan S.

Mol Cell. 2019 Feb 7;73(3):429-445.e7. doi: 10.1016/j.molcel.2018.11.018. Epub 2019 Jan 3.

6.

TRIM16 controls turnover of protein aggregates by modulating NRF2, ubiquitin system, and autophagy: implication for tumorigenesis.

Jena KK, Kolapalli SP, Mehto S, Chauhan S, Chauhan S.

Mol Cell Oncol. 2018 Oct 22;5(6):e1532251. doi: 10.1080/23723556.2018.1532251. eCollection 2018.

PMID:
30525100
7.

Development of an intergeneric hybrid between Oryza sativa L. and Leersia perrieri (A. Camus) Launert.

Ballesfin MLE, Vinarao RB, Sapin J, Kim SR, Jena KK.

Breed Sci. 2018 Sep;68(4):474-480. doi: 10.1270/jsbbs.18045. Epub 2018 Aug 23.

8.

Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species.

Reuscher S, Furuta T, Bessho-Uehara K, Cosi M, Jena KK, Toyoda A, Fujiyama A, Kurata N, Ashikari M.

Commun Biol. 2018 Oct 5;1:162. doi: 10.1038/s42003-018-0171-y. eCollection 2018.

9.

Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.

Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, Becker C, Kudrna D, Zhang J, Londono CEM, Song X, Lee S, Sanchez P, Zuccolo A, Ammiraju JSS, Talag J, Danowitz A, Rivera LF, Gschwend AR, Noutsos C, Wu CC, Kao SM, Zeng JW, Wei FJ, Zhao Q, Feng Q, El Baidouri M, Carpentier MC, Lasserre E, Cooke R, da Rosa Farias D, da Maia LC, Dos Santos RS, Nyberg KG, McNally KL, Mauleon R, Alexandrov N, Schmutz J, Flowers D, Fan C, Weigel D, Jena KK, Wicker T, Chen M, Han B, Henry R, Hsing YC, Kurata N, de Oliveira AC, Panaud O, Jackson SA, Machado CA, Sanderson MJ, Long M, Ware D, Wing RA.

Nat Genet. 2018 Nov;50(11):1618. doi: 10.1038/s41588-018-0261-2.

PMID:
30291357
10.

TRIM16 controls assembly and degradation of protein aggregates by modulating the p62-NRF2 axis and autophagy.

Jena KK, Kolapalli SP, Mehto S, Nath P, Das B, Sahoo PK, Ahad A, Syed GH, Raghav SK, Senapati S, Chauhan S, Chauhan S.

EMBO J. 2018 Sep 14;37(18). pii: e98358. doi: 10.15252/embj.201798358. Epub 2018 Aug 24.

11.

Functional Nano-Coating Materials by Michael Addition and Ring-opening Polymerization: Reactivity, Molecular Architecture and Refractive index.

Jena KK, Alhassan SM, Tiwari A, Hihara LH.

Sci Rep. 2018 Aug 9;8(1):11912. doi: 10.1038/s41598-018-30458-x.

12.

Monosomic alien addition lines (MAALs) of Oryza rhizomatis in Oryza sativa: production, cytology, alien trait introgression, molecular analysis and breeding application.

Hechanova SL, Prusty MR, Kim SR, Ballesfin L, Ramos J, Prahalada GD, Jena KK.

Theor Appl Genet. 2018 Oct;131(10):2197-2211. doi: 10.1007/s00122-018-3147-x. Epub 2018 Jul 21.

PMID:
30032316
13.

Newly Identified Wild Rice Accessions Conferring High Salt Tolerance Might Use a Tissue Tolerance Mechanism in Leaf.

Prusty MR, Kim SR, Vinarao R, Entila F, Egdane J, Diaz MGQ, Jena KK.

Front Plant Sci. 2018 Apr 23;9:417. doi: 10.3389/fpls.2018.00417. eCollection 2018.

14.

Introgression of a functional epigenetic OsSPL14WFP allele into elite indica rice genomes greatly improved panicle traits and grain yield.

Kim SR, Ramos JM, Hizon RJM, Ashikari M, Virk PS, Torres EA, Nissila E, Jena KK.

Sci Rep. 2018 Mar 1;8(1):3833. doi: 10.1038/s41598-018-21355-4.

15.

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.

Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, Becker C, Kudrna D, Zhang J, Londono CEM, Song X, Lee S, Sanchez P, Zuccolo A, Ammiraju JSS, Talag J, Danowitz A, Rivera LF, Gschwend AR, Noutsos C, Wu CC, Kao SM, Zeng JW, Wei FJ, Zhao Q, Feng Q, El Baidouri M, Carpentier MC, Lasserre E, Cooke R, Rosa Farias DD, da Maia LC, Dos Santos RS, Nyberg KG, McNally KL, Mauleon R, Alexandrov N, Schmutz J, Flowers D, Fan C, Weigel D, Jena KK, Wicker T, Chen M, Han B, Henry R, Hsing YC, Kurata N, de Oliveira AC, Panaud O, Jackson SA, Machado CA, Sanderson MJ, Long M, Ware D, Wing RA.

Nat Genet. 2018 Feb;50(2):285-296. doi: 10.1038/s41588-018-0040-0. Epub 2018 Jan 22. Erratum in: Nat Genet. 2018 Nov;50(11):1618.

PMID:
29358651
16.

Identification and fine mapping of a new gene, BPH31 conferring resistance to brown planthopper biotype 4 of India to improve rice, Oryza sativa L.

Prahalada GD, Shivakumar N, Lohithaswa HC, Sidde Gowda DK, Ramkumar G, Kim SR, Ramachandra C, Hittalmani S, Mohapatra T, Jena KK.

Rice (N Y). 2017 Aug 31;10(1):41. doi: 10.1186/s12284-017-0178-x.

17.

Development of 25 near-isogenic lines (NILs) with ten BPH resistance genes in rice (Oryza sativa L.): production, resistance spectrum, and molecular analysis.

Jena KK, Hechanova SL, Verdeprado H, Prahalada GD, Kim SR.

Theor Appl Genet. 2017 Nov;130(11):2345-2360. doi: 10.1007/s00122-017-2963-8. Epub 2017 Aug 9.

PMID:
28795219
18.

Adapting Genotyping-by-Sequencing for Rice F2 Populations.

Furuta T, Ashikari M, Jena KK, Doi K, Reuscher S.

G3 (Bethesda). 2017 Mar 10;7(3):881-893. doi: 10.1534/g3.116.038190.

19.

Erratum: Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.

Ji H, Kim SR, Kim YH, Suh JP, Park HM, Sreenivasulu N, Misra G, Kim SM, Hechanova SL, Kim H, Lee GS, Yoon UH, Kim TH, Lim H, Suh SC, Yang J, An G, Jena KK.

Sci Rep. 2016 Nov 11;6:36688. doi: 10.1038/srep36688. No abstract available.

20.

Association between QTLs and morphological traits toward sheath blight resistance in rice (Oryza sativa L.).

Hossain MK, Jena KK, Bhuiyan MA, Wickneswari R.

Breed Sci. 2016 Sep;66(4):613-626. Epub 2016 Aug 4.

21.

Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.

Ji H, Kim SR, Kim YH, Suh JP, Park HM, Sreenivasulu N, Misra G, Kim SM, Hechanova SL, Kim H, Lee GS, Yoon UH, Kim TH, Lim H, Suh SC, Yang J, An G, Jena KK.

Sci Rep. 2016 Sep 29;6:34376. doi: 10.1038/srep34376. Erratum in: Sci Rep. 2016 Nov 11;6:36688.

22.

Development of Oryza sativa L. by Oryza punctata Kotschy ex Steud. monosomic addition lines with high value traits by interspecific hybridization.

Jena KK, Ballesfin ML, Vinarao RB.

Theor Appl Genet. 2016 Oct;129(10):1873-86. doi: 10.1007/s00122-016-2745-8. Epub 2016 Jun 18.

PMID:
27318700
23.

Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L.

Kim SR, Ramos J, Ashikari M, Virk PS, Torres EA, Nissila E, Hechanova SL, Mauleon R, Jena KK.

Rice (N Y). 2016 Dec;9(1):12. doi: 10.1186/s12284-016-0084-7. Epub 2016 Mar 18.

24.

Construction of a versatile SNP array for pyramiding useful genes of rice.

Kurokawa Y, Noda T, Yamagata Y, Angeles-Shim R, Sunohara H, Uehara K, Furuta T, Nagai K, Jena KK, Yasui H, Yoshimura A, Ashikari M, Doi K.

Plant Sci. 2016 Jan;242:131-139. doi: 10.1016/j.plantsci.2015.09.008. Epub 2015 Sep 10.

25.

Identification and fine-mapping of a new resistance gene, Xa40, conferring resistance to bacterial blight races in rice (Oryza sativa L.).

Kim SM, Suh JP, Qin Y, Noh TH, Reinke RF, Jena KK.

Theor Appl Genet. 2015 Oct;128(10):1933-43. doi: 10.1007/s00122-015-2557-2. Epub 2015 Jun 17.

PMID:
26081948
26.

Bioprocess development for the production of sonorensin by Bacillus sonorensis MT93 and its application as a food preservative.

Chopra L, Singh G, Jena KK, Verma H, Sahoo DK.

Bioresour Technol. 2015 Jan;175:358-66. doi: 10.1016/j.biortech.2014.10.105. Epub 2014 Oct 28.

PMID:
25459843
27.

Molecular analysis of Oryza latifolia Desv. (CCDD genome)-derived introgression lines and identification of value-added traits for rice (O. sativa L.) improvement.

Angeles-Shim RB, Vinarao RB, Marathi B, Jena KK.

J Hered. 2014 Sep-Oct;105(5):676-89. doi: 10.1093/jhered/esu032. Epub 2014 Jun 17.

PMID:
24939891
28.

QTL mapping and development of candidate gene-derived DNA markers associated with seedling cold tolerance in rice (Oryza sativa L.).

Kim SM, Suh JP, Lee CK, Lee JH, Kim YG, Jena KK.

Mol Genet Genomics. 2014 Jun;289(3):333-43. doi: 10.1007/s00438-014-0813-9. Epub 2014 Jan 24.

PMID:
24464311
29.

Development of breeding lines with three pyramided resistance genes that confer broad-spectrum bacterial blight resistance and their molecular analysis in rice.

Suh JP, Jeung JU, Noh TH, Cho YC, Park SH, Park HS, Shin MS, Kim CK, Jena KK.

Rice (N Y). 2013 Feb 8;6(1):5. doi: 10.1186/1939-8433-6-5.

30.

Effective strategy for pyramiding three bacterial blight resistance genes into fine grain rice cultivar, Samba Mahsuri, using sequence tagged site markers.

Kottapalli KR, Lakshmi Narasu M, Jena KK.

Biotechnol Lett. 2010 Jul;32(7):989-96. doi: 10.1007/s10529-010-0249-1. Epub 2010 Mar 28.

PMID:
20349335
31.

Identification and analysis of QTLs controlling cold tolerance at the reproductive stage and validation of effective QTLs in cold-tolerant genotypes of rice (Oryza sativa L.).

Suh JP, Jeung JU, Lee JI, Choi YH, Yea JD, Virk PS, Mackill DJ, Jena KK.

Theor Appl Genet. 2010 Mar;120(5):985-95. doi: 10.1007/s00122-009-1226-8. Epub 2009 Dec 10.

PMID:
20012263
32.

High-resolution mapping of two rice brown planthopper resistance genes, Bph20(t) and Bph21(t), originating from Oryza minuta.

Rahman ML, Jiang W, Chu SH, Qiao Y, Ham TH, Woo MO, Lee J, Khanam MS, Chin JH, Jeung JU, Brar DS, Jena KK, Koh HJ.

Theor Appl Genet. 2009 Nov;119(7):1237-46. doi: 10.1007/s00122-009-1125-z. Epub 2009 Aug 11.

PMID:
19669727
33.

The pi40 gene for durable resistance to rice blast and molecular analysis of pi40-advanced backcross breeding lines.

Suh JP, Roh JH, Cho YC, Han SS, Kim YG, Jena KK.

Phytopathology. 2009 Mar;99(3):243-50. doi: 10.1094/PHYTO-99-3-0243.

34.

Dynamics of Xanthomonas oryzae pv. oryzae Populations in Korea and Their Relationship to Known Bacterial Blight Resistance Genes.

Jeung JU, Heu SG, Shin MS, Vera Cruz CM, Jena KK.

Phytopathology. 2006 Aug;96(8):867-75. doi: 10.1094/PHYTO-96-0867.

35.

A novel gene, Pi40(t), linked to the DNA markers derived from NBS-LRR motifs confers broad spectrum of blast resistance in rice.

Jeung JU, Kim BR, Cho YC, Han SS, Moon HP, Lee YT, Jena KK.

Theor Appl Genet. 2007 Nov;115(8):1163-77. Epub 2007 Oct 2.

PMID:
17909744
36.

Hyperbranched polyesters: synthesis, characterization, and molecular simulations.

Jena KK, Raju KV, Prathab B, Aminabhavi TM.

J Phys Chem B. 2007 Aug 2;111(30):8801-11. Epub 2007 Jun 23.

PMID:
17590037
37.

Morphological and molecular characterization of a new frizzy panicle mutant, "fzp-9(t)", in rice (Oryza sativa L.).

Yi G, Choi JH, Jeong EG, Chon NS, Jena KK, Ku YC, Kim DH, Eun MY, Jeon JS, Nam MH.

Hereditas. 2005 Feb;142(2005):92-7.

38.

High-resolution mapping of a new brown planthopper (BPH) resistance gene, Bph18(t), and marker-assisted selection for BPH resistance in rice (Oryza sativa L.).

Jena KK, Jeung JU, Lee JH, Choi HC, Brar DS.

Theor Appl Genet. 2006 Jan;112(2):288-97. Epub 2005 Oct 21. Erratum in: Theor Appl Genet. 2006 Apr;112(6):1192-4.

PMID:
16240104
39.

DNA markers and marker-assisted breeding for durable resistance to bacterial blight disease in rice.

Rao KK, Lakshminarasu M, Jena KK.

Biotechnol Adv. 2002 Apr;20(1):33-47.

PMID:
14538061
40.

Comparative RFLP mapping of a wild rice, Oryza officinalis, and cultivated rice, O. sativa.

Jena KK, Khush GS, Kochert G.

Genome. 1994 Jun;37(3):382-9.

PMID:
7913453
41.

Development of monosomic alien addition lines and introgression of genes from Oryza australiensis Domin. to cultivated rice O. sativa L.

Multani DS, Jena KK, Brar DS, de Los Reyes BG, Angeles ER, Khush GS.

Theor Appl Genet. 1994 Apr;88(1):102-9. doi: 10.1007/BF00222401.

PMID:
24185889
42.

RFLP analysis of rice (Oryza sativa L.) introgression lines.

Jena KK, Kochert G, Khush GS.

Theor Appl Genet. 1992 Aug;84(5-6):608-16. doi: 10.1007/BF00224159.

PMID:
24201348
43.
44.

Introgression of genes from Oryza officinalis Well ex Watt to cultivated rice, O. sativa L.

Jena KK, Khush GS.

Theor Appl Genet. 1990 Dec;80(6):737-45. doi: 10.1007/BF00224186.

PMID:
24221103

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