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Quantification of glyphosate and AMPA from microbiome reactor fluids.

Fritz-Wallace K, Engelmann B, Krause JL, Schäpe SS, Pöppe J, Herberth G, Rösler U, Jehmlich N, von Bergen M, Rolle-Kampczyk U.

Rapid Commun Mass Spectrom. 2020 Jan 21. doi: 10.1002/rcm.8668. [Epub ahead of print]


Following the community development of SIHUMIx - a new intestinal in vitro model for bioreactor use.

Krause JL, Schaepe SS, Fritz-Wallace K, Engelmann B, Rolle-Kampczyk U, Kleinsteuber S, Schattenberg F, Liu Z, Mueller S, Jehmlich N, Von Bergen M, Herberth G.

Gut Microbes. 2020 Jan 10:1-14. doi: 10.1080/19490976.2019.1702431. [Epub ahead of print]


Mucosal-associated invariant T-Cell (MAIT) activation is altered by chlorpyrifos- and glyphosate-treated commensal gut bacteria.

Mendler A, Geier F, Haange SB, Pierzchalski A, Krause JL, Nijenhuis I, Froment J, Jehmlich N, Berger U, Ackermann G, Rolle-Kampczyk U, von Bergen M, Herberth G.

J Immunotoxicol. 2020 Dec;17(1):10-20. doi: 10.1080/1547691X.2019.1706672.


The total microbiome functions in bacteria and fungi.

Starke R, Capek P, Morais D, Callister SJ, Jehmlich N.

J Proteomics. 2020 Feb 20;213:103623. doi: 10.1016/j.jprot.2019.103623. Epub 2019 Dec 19.


Enrichment and identification of small proteins in a simplified human gut microbiome.

Petruschke H, Anders J, Stadler PF, Jehmlich N, von Bergen M.

J Proteomics. 2020 Feb 20;213:103604. doi: 10.1016/j.jprot.2019.103604. Epub 2019 Dec 10.


The Simplified Human Intestinal Microbiota (SIHUMIx) Shows High Structural and Functional Resistance against Changing Transit Times in In Vitro Bioreactors.

Schäpe SS, Krause JL, Engelmann B, Fritz-Wallace K, Schattenberg F, Liu Z, Müller S, Jehmlich N, Rolle-Kampczyk U, Herberth G, von Bergen M.

Microorganisms. 2019 Dec 3;7(12). pii: E641. doi: 10.3390/microorganisms7120641.


Pseudomonas spp. are key players in agricultural biogas substrate degradation.

Buettner C, von Bergen M, Jehmlich N, Noll M.

Sci Rep. 2019 Sep 6;9(1):12871. doi: 10.1038/s41598-019-49313-8.


The class II benzoyl-coenzyme A reductase complex from the sulfate-reducing Desulfosarcina cetonica.

Anselmann SEL, Löffler C, Stärk HJ, Jehmlich N, von Bergen M, Brüls T, Boll M.

Environ Microbiol. 2019 Nov;21(11):4241-4252. doi: 10.1111/1462-2920.14784. Epub 2019 Sep 1.


Global ecological predictors of the soil priming effect.

Bastida F, García C, Fierer N, Eldridge DJ, Bowker MA, Abades S, Alfaro FD, Asefaw Berhe A, Cutler NA, Gallardo A, García-Velázquez L, Hart SC, Hayes PE, Hernández T, Hseu ZY, Jehmlich N, Kirchmair M, Lambers H, Neuhauser S, Peña-Ramírez VM, Pérez CA, Reed SC, Santos F, Siebe C, Sullivan BW, Trivedi P, Vera A, Williams MA, Luis Moreno J, Delgado-Baquerizo M.

Nat Commun. 2019 Aug 2;10(1):3481. doi: 10.1038/s41467-019-11472-7.


Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy.

Taubert M, Grob C, Crombie A, Howat AM, Burns OJ, Weber M, Lott C, Kaster AK, Vollmers J, Jehmlich N, von Bergen M, Chen Y, Murrell JC.

Environ Microbiol. 2019 Oct;21(10):3780-3795. doi: 10.1111/1462-2920.14728. Epub 2019 Jul 31.


Enzymes involved in phthalate degradation in sulphate-reducing bacteria.

Geiger RA, Junghare M, Mergelsberg M, Ebenau-Jehle C, Jesenofsky VJ, Jehmlich N, von Bergen M, Schink B, Boll M.

Environ Microbiol. 2019 Oct;21(10):3601-3612. doi: 10.1111/1462-2920.14681. Epub 2019 May 23.


Widespread soil bacterium that oxidizes atmospheric methane.

Tveit AT, Hestnes AG, Robinson SL, Schintlmeister A, Dedysh SN, Jehmlich N, von Bergen M, Herbold C, Wagner M, Richter A, Svenning MM.

Proc Natl Acad Sci U S A. 2019 Apr 23;116(17):8515-8524. doi: 10.1073/pnas.1817812116. Epub 2019 Apr 8.


Incomplete cell disruption of resistant microbes.

Starke R, Jehmlich N, Alfaro T, Dohnalkova A, Capek P, Bell SL, Hofmockel KS.

Sci Rep. 2019 Apr 4;9(1):5618. doi: 10.1038/s41598-019-42188-9.


Genome and secretome of Chondrostereum purpureum correspond to saprotrophic and phytopathogenic life styles.

Reina R, Kellner H, Hess J, Jehmlich N, García-Romera I, Aranda E, Hofrichter M, Liers C.

PLoS One. 2019 Mar 1;14(3):e0212769. doi: 10.1371/journal.pone.0212769. eCollection 2019.


Synbiotic-driven improvement of metabolic disturbances is associated with changes in the gut microbiome in diet-induced obese mice.

Ke X, Walker A, Haange SB, Lagkouvardos I, Liu Y, Schmitt-Kopplin P, von Bergen M, Jehmlich N, He X, Clavel T, Cheung PCK.

Mol Metab. 2019 Apr;22:96-109. doi: 10.1016/j.molmet.2019.01.012. Epub 2019 Feb 5.


Disease Development Is Accompanied by Changes in Bacterial Protein Abundance and Functions in a Refined Model of Dextran Sulfate Sodium (DSS)-Induced Colitis.

Haange SB, Jehmlich N, Hoffmann M, Weber K, Lehmann J, von Bergen M, Slanina U.

J Proteome Res. 2019 Apr 5;18(4):1774-1786. doi: 10.1021/acs.jproteome.8b00974. Epub 2019 Mar 26.


When drought meets forest management: Effects on the soil microbial community of a Holm oak forest ecosystem.

Bastida F, López-Mondéjar R, Baldrian P, Andrés-Abellán M, Jehmlich N, Torres IF, García C, López-Serrano FR.

Sci Total Environ. 2019 Apr 20;662:276-286. doi: 10.1016/j.scitotenv.2019.01.233. Epub 2019 Jan 22.


Using proteins to study how microbes contribute to soil ecosystem services: The current state and future perspectives of soil metaproteomics.

Starke R, Jehmlich N, Bastida F.

J Proteomics. 2019 Apr 30;198:50-58. doi: 10.1016/j.jprot.2018.11.011. Epub 2018 Nov 13.


Expanding the Use of Spectral Libraries in Proteomics.

Deutsch EW, Perez-Riverol Y, Chalkley RJ, Wilhelm M, Tate S, Sachsenberg T, Walzer M, Käll L, Delanghe B, Böcker S, Schymanski EL, Wilmes P, Dorfer V, Kuster B, Volders PJ, Jehmlich N, Vissers JPC, Wolan DW, Wang AY, Mendoza L, Shofstahl J, Dowsey AW, Griss J, Salek RM, Neumann S, Binz PA, Lam H, Vizcaíno JA, Bandeira N, Röst H.

J Proteome Res. 2018 Dec 7;17(12):4051-4060. doi: 10.1021/acs.jproteome.8b00485. Epub 2018 Oct 11. Review.


Sulfur-34S and 36S Stable Isotope Labeling of Amino Acids for Quantification (SULAQ34/36) of Proteome Analyses.

Herbst FA, Jehmlich N, von Bergen M, Schmidt F.

Methods Mol Biol. 2018;1841:163-174. doi: 10.1007/978-1-4939-8695-8_12.


Delftia sp. LCW, a strain isolated from a constructed wetland shows novel properties for dimethylphenol isomers degradation.

Vásquez-Piñeros MA, Martínez-Lavanchy PM, Jehmlich N, Pieper DH, Rincón CA, Harms H, Junca H, Heipieper HJ.

BMC Microbiol. 2018 Sep 6;18(1):108. doi: 10.1186/s12866-018-1255-z.


Land use driven change in soil pH affects microbial carbon cycling processes.

Malik AA, Puissant J, Buckeridge KM, Goodall T, Jehmlich N, Chowdhury S, Gweon HS, Peyton JM, Mason KE, van Agtmaal M, Blaud A, Clark IM, Whitaker J, Pywell RF, Ostle N, Gleixner G, Griffiths RI.

Nat Commun. 2018 Sep 4;9(1):3591. doi: 10.1038/s41467-018-05980-1.


Desulfitobacterium contributes to the microbial transformation of 2,4,5-T by methanogenic enrichment cultures from a Vietnamese active landfill.

Lechner U, Türkowsky D, Dinh TTH, Al-Fathi H, Schwoch S, Franke S, Gerlach MS, Koch M, von Bergen M, Jehmlich N, Dang TCH.

Microb Biotechnol. 2018 Nov;11(6):1137-1156. doi: 10.1111/1751-7915.13301. Epub 2018 Aug 16.


Thermal proteome profiling allows quantitative assessment of interactions between tetrachloroethene reductive dehalogenase and trichloroethene.

Türkowsky D, Lohmann P, Mühlenbrink M, Schubert T, Adrian L, Goris T, Jehmlich N, von Bergen M.

J Proteomics. 2019 Feb 10;192:10-17. doi: 10.1016/j.jprot.2018.05.018. Epub 2018 Jun 4.


Climate shapes the protein abundance of dominant soil bacteria.

Bastida F, Crowther TW, Prieto I, Routh D, García C, Jehmlich N.

Sci Total Environ. 2018 Nov 1;640-641:18-21. doi: 10.1016/j.scitotenv.2018.05.288. Epub 2018 May 28.


Gut microbial functional maturation and succession during human early life.

Cerdó T, Ruiz A, Acuña I, Jáuregui R, Jehmlich N, Haange SB, von Bergen M, Suárez A, Campoy C.

Environ Microbiol. 2018 Jun;20(6):2160-2177. doi: 10.1111/1462-2920.14235. Epub 2018 May 11.


A Retentive Memory of Tetrachloroethene Respiration in Sulfurospirillum halorespirans - involved Proteins and a possible link to Acetylation of a Two-Component Regulatory System.

Türkowsky D, Esken J, Goris T, Schubert T, Diekert G, Jehmlich N, von Bergen M.

J Proteomics. 2018 Jun 15;181:36-46. doi: 10.1016/j.jprot.2018.03.030. Epub 2018 Apr 1.


Metabolic Adaptation of Methanogens in Anaerobic Digesters Upon Trace Element Limitation.

Wintsche B, Jehmlich N, Popp D, Harms H, Kleinsteuber S.

Front Microbiol. 2018 Mar 13;9:405. doi: 10.3389/fmicb.2018.00405. eCollection 2018.


Active site alanine preceding catalytic cysteine determines unique substrate specificity in bacterial CoA-acylating prenal dehydrogenase.

Becher E, Heese A, Claußen L, Eisen S, Jehmlich N, Rohwerder T, Purswani J.

FEBS Lett. 2018 Apr;592(7):1150-1160. doi: 10.1002/1873-3468.13019. Epub 2018 Mar 10.


An integrative overview of genomic, transcriptomic and proteomic analyses in organohalide respiration research.

Türkowsky D, Jehmlich N, Diekert G, Adrian L, von Bergen M, Goris T.

FEMS Microbiol Ecol. 2018 Mar 1;94(3). doi: 10.1093/femsec/fiy013. Review.


Tracking active groundwater microbes with D2 O labelling to understand their ecosystem function.

Taubert M, Stöckel S, Geesink P, Girnus S, Jehmlich N, von Bergen M, Rösch P, Popp J, Küsel K.

Environ Microbiol. 2018 Jan;20(1):369-384. doi: 10.1111/1462-2920.14010. Epub 2017 Dec 15.


The extracellular metaproteome of soils under semiarid climate: A methodological comparison of extraction buffers.

Bastida F, Jehmlich N, Torres IF, García C.

Sci Total Environ. 2018 Apr 1;619-620:707-711. doi: 10.1016/j.scitotenv.2017.11.134. Epub 2017 Nov 29.


Ammonia-oxidising archaea living at low pH: Insights from comparative genomics.

Herbold CW, Lehtovirta-Morley LE, Jung MY, Jehmlich N, Hausmann B, Han P, Loy A, Pester M, Sayavedra-Soto LA, Rhee SK, Prosser JI, Nicol GW, Wagner M, Gubry-Rangin C.

Environ Microbiol. 2017 Dec;19(12):4939-4952. doi: 10.1111/1462-2920.13971. Epub 2017 Dec 4.


Identification of novel substrates of Shigella T3SA through analysis of its virulence plasmid-encoded secretome.

Pinaud L, Ferrari ML, Friedman R, Jehmlich N, von Bergen M, Phalipon A, Sansonetti PJ, Campbell-Valois FX.

PLoS One. 2017 Oct 26;12(10):e0186920. doi: 10.1371/journal.pone.0186920. eCollection 2017.


A patchwork pathway for oxygenase-independent degradation of side chain containing steroids.

Warnke M, Jacoby C, Jung T, Agne M, Mergelsberg M, Starke R, Jehmlich N, von Bergen M, Richnow HH, Brüls T, Boll M.

Environ Microbiol. 2017 Nov;19(11):4684-4699. doi: 10.1111/1462-2920.13933. Epub 2017 Nov 2.


Insight into the modulation of intestinal proteome of juvenile common carp (Cyprinus carpio L.) after dietary exposure to ZnO nanoparticles.

Chupani L, Niksirat H, Lünsmann V, Haange SB, von Bergen M, Jehmlich N, Zuskova E.

Sci Total Environ. 2018 Feb 1;613-614:62-71. doi: 10.1016/j.scitotenv.2017.08.129. Epub 2017 Sep 26.


Ecological and functional adaptations to water management in a semiarid agroecosystem: a soil metaproteomics approach.

Starke R, Bastida F, Abadía J, García C, Nicolás E, Jehmlich N.

Sci Rep. 2017 Aug 31;7(1):10221. doi: 10.1038/s41598-017-09973-w.


Differential sensitivity of total and active soil microbial communities to drought and forest management.

Bastida F, Torres IF, Andrés-Abellán M, Baldrian P, López-Mondéjar R, Větrovský T, Richnow HH, Starke R, Ondoño S, García C, López-Serrano FR, Jehmlich N.

Glob Chang Biol. 2017 Oct;23(10):4185-4203. doi: 10.1111/gcb.13790. Epub 2017 Jul 6. Erratum in: Glob Chang Biol. 2018 Jan;24(1):552.


Metabolic in Vivo Labeling Highlights Differences of Metabolically Active Microbes from the Mucosal Gastrointestinal Microbiome between High-Fat and Normal Chow Diet.

Oberbach A, Haange SB, Schlichting N, Heinrich M, Lehmann S, Till H, Hugenholtz F, Kullnick Y, Smidt H, Frank K, Seifert J, Jehmlich N, von Bergen M.

J Proteome Res. 2017 Apr 7;16(4):1593-1604. doi: 10.1021/acs.jproteome.6b00973. Epub 2017 Mar 21.


Methylamine as a nitrogen source for microorganisms from a coastal marine environment.

Taubert M, Grob C, Howat AM, Burns OJ, Pratscher J, Jehmlich N, von Bergen M, Richnow HH, Chen Y, Murrell JC.

Environ Microbiol. 2017 Jun;19(6):2246-2257. doi: 10.1111/1462-2920.13709. Epub 2017 Mar 29.


A Peroxygenase from Chaetomium globosum Catalyzes the Selective Oxygenation of Testosterone.

Kiebist J, Schmidtke KU, Zimmermann J, Kellner H, Jehmlich N, Ullrich R, Zänder D, Hofrichter M, Scheibner K.

Chembiochem. 2017 Mar 16;18(6):563-569. doi: 10.1002/cbic.201600677. Epub 2017 Mar 1.


Proteome data on the microbial microbiome of grasshopper feces.

Jehmlich N, Müller M, Meyer S, Tischer A, Potthast K, Michalzik B, von Bergen M.

Data Brief. 2016 Nov 16;9:1147-1154. eCollection 2016 Dec.


Effects of chronic dietary exposure of zinc oxide nanoparticles on the serum protein profile of juvenile common carp (Cyprinus carpio L.).

Chupani L, Zusková E, Niksirat H, Panáček A, Lünsmann V, Haange SB, von Bergen M, Jehmlich N.

Sci Total Environ. 2017 Feb 1;579:1504-1511. doi: 10.1016/j.scitotenv.2016.11.154.


Maximization of cell viability rather than biocatalyst activity improves whole-cell ω-oxyfunctionalization performance.

Kadisch M, Julsing MK, Schrewe M, Jehmlich N, Scheer B, von Bergen M, Schmid A, Bühler B.

Biotechnol Bioeng. 2017 Apr;114(4):874-884. doi: 10.1002/bit.26213. Epub 2016 Nov 24.


Candidate Brocadiales dominates C, N and S cycling in anoxic groundwater of a pristine limestone-fracture aquifer.

Starke R, Müller M, Gaspar M, Marz M, Küsel K, Totsche KU, von Bergen M, Jehmlich N.

J Proteomics. 2017 Jan 30;152:153-160. doi: 10.1016/j.jprot.2016.11.003. Epub 2016 Nov 10.


Soil Fungal:Bacterial Ratios Are Linked to Altered Carbon Cycling.

Malik AA, Chowdhury S, Schlager V, Oliver A, Puissant J, Vazquez PG, Jehmlich N, von Bergen M, Griffiths RI, Gleixner G.

Front Microbiol. 2016 Aug 9;7:1247. doi: 10.3389/fmicb.2016.01247. eCollection 2016.


ATP-Dependent C-F Bond Cleavage Allows the Complete Degradation of 4-Fluoroaromatics without Oxygen.

Tiedt O, Mergelsberg M, Boll K, Müller M, Adrian L, Jehmlich N, von Bergen M, Boll M.

mBio. 2016 Aug 9;7(4). pii: e00990-16. doi: 10.1128/mBio.00990-16.


Comparative performance evaluation of multi-metal resistant fungal strains for simultaneous removal of multiple hazardous metals.

Dey P, Gola D, Mishra A, Malik A, Kumar P, Singh DK, Patel N, von Bergen M, Jehmlich N.

J Hazard Mater. 2016 Nov 15;318:679-685. doi: 10.1016/j.jhazmat.2016.07.025. Epub 2016 Jul 11.


The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils.

Bastida F, Torres IF, Moreno JL, Baldrian P, Ondoño S, Ruiz-Navarro A, Hernández T, Richnow HH, Starke R, García C, Jehmlich N.

Mol Ecol. 2016 Sep;25(18):4660-73. doi: 10.1111/mec.13783. Epub 2016 Aug 26.


Proteomic data set of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates.

Goris T, Schiffmann CL, Gadkari J, Adrian L, von Bergen M, Diekert G, Jehmlich N.

Data Brief. 2016 Jun 21;8:637-42. doi: 10.1016/j.dib.2016.06.022. eCollection 2016 Sep.

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