Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 39

1.

Gut microbiota alterations associated with reduced bone mineral density in older adults.

Das M, Cronin O, Keohane DM, Cormac EM, Nugent H, Nugent M, Molloy C, O'Toole PW, Shanahan F, Molloy MG, Jeffery IB.

Rheumatology (Oxford). 2019 Aug 4. pii: kez302. doi: 10.1093/rheumatology/kez302. [Epub ahead of print]

PMID:
31378815
2.

Schistosoma mansoni Worm Infection Regulates the Intestinal Microbiota and Susceptibility to Colitis.

Floudas A, Aviello G, Schwartz C, Jeffery IB, O'Toole PW, Fallon PG.

Infect Immun. 2019 Jul 23;87(8). pii: e00275-19. doi: 10.1128/IAI.00275-19. Print 2019 Aug.

PMID:
31138616
3.

Prebiotic supplementation in frail older people affects specific gut microbiota taxa but not global diversity.

Tran TTT, Cousin FJ, Lynch DB, Menon R, Brulc J, Brown JR, O'Herlihy E, Butto LF, Power K, Jeffery IB, O'Connor EM, O'Toole PW.

Microbiome. 2019 Mar 13;7(1):39. doi: 10.1186/s40168-019-0654-1.

4.

Publisher Correction: Enterotypes in the landscape of gut microbial community composition.

Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, Ochman H, O'Toole PW, Quince C, Relman DA, Shanahan F, Sunagawa S, Wang J, Weinstock GM, Wu GD, Zeller G, Zhao L, Raes J, Knight R, Bork P.

Nat Microbiol. 2018 Mar;3(3):388. doi: 10.1038/s41564-018-0114-x.

PMID:
29440750
5.

Enterotypes in the landscape of gut microbial community composition.

Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, Ochman H, O'Toole PW, Quince C, Relman DA, Shanahan F, Sunagawa S, Wang J, Weinstock GM, Wu GD, Zeller G, Zhao L, Raes J, Knight R, Bork P.

Nat Microbiol. 2018 Jan;3(1):8-16. doi: 10.1038/s41564-017-0072-8. Epub 2017 Dec 18. Review. Erratum in: Nat Microbiol. 2018 Feb 13;:.

6.

The oral microbiota in colorectal cancer is distinctive and predictive.

Flemer B, Warren RD, Barrett MP, Cisek K, Das A, Jeffery IB, Hurley E, O'Riordain M, Shanahan F, O'Toole PW.

Gut. 2018 Aug;67(8):1454-1463. doi: 10.1136/gutjnl-2017-314814. Epub 2017 Oct 7.

7.

Microbiome-health interactions in older people.

O'Toole PW, Jeffery IB.

Cell Mol Life Sci. 2018 Jan;75(1):119-128. doi: 10.1007/s00018-017-2673-z. Epub 2017 Oct 6. Review.

PMID:
28986601
8.

MyD88 is an essential component of retinoic acid-induced differentiation in human pluripotent embryonal carcinoma cells.

Sulaiman G, Cooke A, Ffrench B, Gasch C, Abdullai OA, O'Connor K, Elbaruni S, Blackshields G, Spillane C, Keegan H, McEneaney V, Knittel R, Rogers A, Jeffery IB, Doyle B, Bates M, d'Adhemar C, Lee MY, Campbell EL, Moynagh PN, Higgins DG, O'Toole S, O'Neill L, O'Leary JJ, Gallagher MF.

Cell Death Differ. 2017 Nov;24(11):1975-1986. doi: 10.1038/cdd.2017.124. Epub 2017 Sep 8.

9.

Erratum to: Evolution of gut microbiota composition from birth to 24 weeks in the INFANTMET Cohort.

Hill CJ, Lynch DB, Murphy K, Ulaszewska M, Jeffery IB, O'Shea CA, Watkins C, Dempsey E, Mattivi F, Tuohy K, Ross RP, Ryan CA, O'Toole PW, Stanton C.

Microbiome. 2017 Feb 14;5(1):21. doi: 10.1186/s40168-017-0240-3. No abstract available.

10.

Evolution of gut microbiota composition from birth to 24 weeks in the INFANTMET Cohort.

Hill CJ, Lynch DB, Murphy K, Ulaszewska M, Jeffery IB, O'Shea CA, Watkins C, Dempsey E, Mattivi F, Tuohy K, Ross RP, Ryan CA, O' Toole PW, Stanton C.

Microbiome. 2017 Jan 17;5(1):4. doi: 10.1186/s40168-016-0213-y. Erratum in: Microbiome. 2017 Feb 14;5(1):21.

11.

Effect of room temperature transport vials on DNA quality and phylogenetic composition of faecal microbiota of elderly adults and infants.

Hill CJ, Brown JR, Lynch DB, Jeffery IB, Ryan CA, Ross RP, Stanton C, O'Toole PW.

Microbiome. 2016 May 10;4(1):19. doi: 10.1186/s40168-016-0164-3.

12.

Tumour-associated and non-tumour-associated microbiota in colorectal cancer.

Flemer B, Lynch DB, Brown JM, Jeffery IB, Ryan FJ, Claesson MJ, O'Riordain M, Shanahan F, O'Toole PW.

Gut. 2017 Apr;66(4):633-643. doi: 10.1136/gutjnl-2015-309595. Epub 2016 Mar 18.

13.

Erratum to: signatures of early frailty in the gut microbiota.

Jackson MA, Jeffery IB, Beaumont M, Bell JT, Clark AG, Ley RE, O'Toole PW, Spector TD, Steves CJ.

Genome Med. 2016 Feb 17;8(1):21. doi: 10.1186/s13073-016-0275-2. No abstract available.

14.

Signatures of early frailty in the gut microbiota.

Jackson MA, Jeffery IB, Beaumont M, Bell JT, Clark AG, Ley RE, O'Toole PW, Spector TD, Steves CJ.

Genome Med. 2016 Jan 29;8(1):8. doi: 10.1186/s13073-016-0262-7. Erratum in: Genome Med. 2016;8(1):21. Jackson, Matt [corrected to Jackson, Matthew A].

15.

Gut microbiota and aging.

O'Toole PW, Jeffery IB.

Science. 2015 Dec 4;350(6265):1214-5. doi: 10.1126/science.aac8469. Review.

PMID:
26785481
16.

SPINGO: a rapid species-classifier for microbial amplicon sequences.

Allard G, Ryan FJ, Jeffery IB, Claesson MJ.

BMC Bioinformatics. 2015 Oct 8;16:324. doi: 10.1186/s12859-015-0747-1.

17.

High-level adherence to a Mediterranean diet beneficially impacts the gut microbiota and associated metabolome.

De Filippis F, Pellegrini N, Vannini L, Jeffery IB, La Storia A, Laghi L, Serrazanetti DI, Di Cagno R, Ferrocino I, Lazzi C, Turroni S, Cocolin L, Brigidi P, Neviani E, Gobbetti M, O'Toole PW, Ercolini D.

Gut. 2016 Nov;65(11):1812-1821. doi: 10.1136/gutjnl-2015-309957. Epub 2015 Sep 28.

PMID:
26416813
18.

Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera.

Sun Z, Harris HM, McCann A, Guo C, Argimón S, Zhang W, Yang X, Jeffery IB, Cooney JC, Kagawa TF, Liu W, Song Y, Salvetti E, Wrobel A, Rasinkangas P, Parkhill J, Rea MC, O'Sullivan O, Ritari J, Douillard FP, Paul Ross R, Yang R, Briner AE, Felis GE, de Vos WM, Barrangou R, Klaenhammer TR, Caufield PW, Cui Y, Zhang H, O'Toole PW.

Nat Commun. 2015 Sep 29;6:8322. doi: 10.1038/ncomms9322.

19.

Composition and temporal stability of the gut microbiota in older persons.

Jeffery IB, Lynch DB, O'Toole PW.

ISME J. 2016 Jan;10(1):170-82. doi: 10.1038/ismej.2015.88. Epub 2015 Jun 19.

20.

The role of the microbiota in ageing: current state and perspectives.

Lynch DB, Jeffery IB, O'Toole PW.

Wiley Interdiscip Rev Syst Biol Med. 2015 May-Jun;7(3):131-8. doi: 10.1002/wsbm.1293. Epub 2015 Mar 16. Review.

21.

Response to Letter to the editor from Dr. Kawada regarding the article Dietary glycaemic load and cognitive performance in elderly subjects.

Power SE, Fitzgerald GF, Jeffery IB.

Eur J Nutr. 2015 Feb;54(1):159-60. doi: 10.1007/s00394-014-0823-8.

PMID:
25524328
22.

Diet-microbiota-health interactions in older subjects: implications for healthy aging.

Lynch DB, Jeffery IB, Cusack S, O'Connor EM, O'Toole PW.

Interdiscip Top Gerontol. 2015;40:141-54. doi: 10.1159/000364976. Epub 2014 Oct 13. Review.

PMID:
25341519
23.

Dietary glycaemic load associated with cognitive performance in elderly subjects.

Power SE, O'Connor EM, Ross RP, Stanton C, O'Toole PW, Fitzgerald GF, Jeffery IB.

Eur J Nutr. 2015 Jun;54(4):557-68. doi: 10.1007/s00394-014-0737-5. Epub 2014 Jul 18.

PMID:
25034880
24.

Exercise and associated dietary extremes impact on gut microbial diversity.

Clarke SF, Murphy EF, O'Sullivan O, Lucey AJ, Humphreys M, Hogan A, Hayes P, O'Reilly M, Jeffery IB, Wood-Martin R, Kerins DM, Quigley E, Ross RP, O'Toole PW, Molloy MG, Falvey E, Shanahan F, Cotter PD.

Gut. 2014 Dec;63(12):1913-20. doi: 10.1136/gutjnl-2013-306541. Epub 2014 Jun 9.

PMID:
25021423
25.

Food and nutrient intake of Irish community-dwelling elderly subjects: who is at nutritional risk?

Power SE, Jeffery IB, Ross RP, Stanton C, O'Toole PW, O'Connor EM, Fitzgerald GF.

J Nutr Health Aging. 2014;18(6):561-72. doi: 10.1007/s12603-014-0449-9.

PMID:
24950145
26.

Pro-inflammatory flagellin proteins of prevalent motile commensal bacteria are variably abundant in the intestinal microbiome of elderly humans.

Neville BA, Sheridan PO, Harris HM, Coughlan S, Flint HJ, Duncan SH, Jeffery IB, Claesson MJ, Ross RP, Scott KP, O'Toole PW.

PLoS One. 2013 Jul 23;8(7):e68919. doi: 10.1371/journal.pone.0068919. Print 2013.

27.

The core faecal bacterial microbiome of Irish Thoroughbred racehorses.

O' Donnell MM, Harris HM, Jeffery IB, Claesson MJ, Younge B, O' Toole PW, Ross RP.

Lett Appl Microbiol. 2013 Dec;57(6):492-501. doi: 10.1111/lam.12137. Epub 2013 Aug 19.

28.

The human gut chip "HuGChip", an explorative phylogenetic microarray for determining gut microbiome diversity at family level.

Tottey W, Denonfoux J, Jaziri F, Parisot N, Missaoui M, Hill D, Borrel G, Peyretaillade E, Alric M, Harris HM, Jeffery IB, Claesson MJ, O'Toole PW, Peyret P, Brugère JF.

PLoS One. 2013 May 17;8(5):e62544. doi: 10.1371/journal.pone.0062544. Print 2013.

29.

Diet-microbiota interactions and their implications for healthy living.

Jeffery IB, O'Toole PW.

Nutrients. 2013 Jan 17;5(1):234-52. doi: 10.3390/nu5010234. Review.

30.

Categorization of the gut microbiota: enterotypes or gradients?

Jeffery IB, Claesson MJ, O'Toole PW, Shanahan F.

Nat Rev Microbiol. 2012 Sep;10(9):591-2. No abstract available.

PMID:
23066529
31.

The microbiota link to irritable bowel syndrome: an emerging story.

Jeffery IB, Quigley EM, Öhman L, Simrén M, O'Toole PW.

Gut Microbes. 2012 Nov-Dec;3(6):572-6. doi: 10.4161/gmic.21772. Epub 2012 Aug 16. Review.

32.

Gut microbiota composition correlates with diet and health in the elderly.

Claesson MJ, Jeffery IB, Conde S, Power SE, O'Connor EM, Cusack S, Harris HM, Coakley M, Lakshminarayanan B, O'Sullivan O, Fitzgerald GF, Deane J, O'Connor M, Harnedy N, O'Connor K, O'Mahony D, van Sinderen D, Wallace M, Brennan L, Stanton C, Marchesi JR, Fitzgerald AP, Shanahan F, Hill C, Ross RP, O'Toole PW.

Nature. 2012 Aug 9;488(7410):178-84. doi: 10.1038/nature11319.

PMID:
22797518
33.

Dynamic 5-HT2C receptor editing in a mouse model of obesity.

Schellekens H, Clarke G, Jeffery IB, Dinan TG, Cryan JF.

PLoS One. 2012;7(3):e32266. doi: 10.1371/journal.pone.0032266. Epub 2012 Mar 20.

34.

Effect of Lactobacillus salivarius bacteriocin Abp118 on the mouse and pig intestinal microbiota.

Riboulet-Bisson E, Sturme MH, Jeffery IB, O'Donnell MM, Neville BA, Forde BM, Claesson MJ, Harris H, Gardiner GE, Casey PG, Lawlor PG, O'Toole PW, Ross RP.

PLoS One. 2012;7(2):e31113. doi: 10.1371/journal.pone.0031113. Epub 2012 Feb 17.

35.

An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota.

Jeffery IB, O'Toole PW, Öhman L, Claesson MJ, Deane J, Quigley EM, Simrén M.

Gut. 2012 Jul;61(7):997-1006. doi: 10.1136/gutjnl-2011-301501. Epub 2011 Dec 16.

PMID:
22180058
36.

Detecting microRNA activity from gene expression data.

Madden SF, Carpenter SB, Jeffery IB, Björkbacka H, Fitzgerald KA, O'Neill LA, Higgins DG.

BMC Bioinformatics. 2010 May 18;11:257. doi: 10.1186/1471-2105-11-257.

37.

Integrating multiple genome annotation databases improves the interpretation of microarray gene expression data.

Yin J, McLoughlin S, Jeffery IB, Glaviano A, Kennedy B, Higgins DG.

BMC Genomics. 2010 Jan 20;11:50. doi: 10.1186/1471-2164-11-50.

38.

Integrating transcription factor binding site information with gene expression datasets.

Jeffery IB, Madden SF, McGettigan PA, Perrière G, Culhane AC, Higgins DG.

Bioinformatics. 2007 Feb 1;23(3):298-305. Epub 2006 Nov 24.

PMID:
17127681
39.

Supplemental Content

Loading ...
Support Center